Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004229

Physical Location & Seq

Genomic Coordinates Reverse (-)

35025455 .. 35025802

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008687

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGAGGACCATACTTACCATTTGCGTCGTTGGCTTGCTGTTGACGGTGGCATCTCTAGAAGCCGATGCTAAACGGTTTGTTTTGCATGACCGTCACTTGGTTCAAGTTAAAACTGATCCAAATATGGATCAAAACCCTGAGGTTCTTGCTAGTGGTGGTGCAAAAGAGCAATTTCAGTCTCAGTCCCAGACCACAAGTAAGGGTAGCAGCAACAGCGATGCAAAGCATGATGACATGAACGAGATTCATGCTACAATCCAATGCCTGCCAGATGAACCTCGAGGGAGGCCGCGTTGTAAAACTACTGAGTCTAAAAGACTTCATGAGCCTAAAAGCCTTCATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

12.74

Weight (kDa)

7.01

Isoelectric Point (pI)

40.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004229)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20030 FvH4_4g20300
malus_domestica	MD16G1151900.v1.1
prunus_persica	Prupe.1G115400_v2.0.a1
rosa_laevigata	RLG00000007343 RLG00000008687 RLG00000013101 RLG00000036563
rosa_roxburghii	Rroxscaffold_1G00006070 Rroxscaffold_5G00352500 Rroxscaffold_5G00367720 Rroxscaffold_5G00367730
rosa_rugosa	Rorug04G0082500 Rorug04G0082600 Rorug04G0082700 Rorug04G0205600 Rorug04G0205700 Rorug05G0439500 Rorug05G0439600
rosa_samantha	Rh4AG147200 Rh4AG262400 Rh4AG262500 Rh4CG154000 Rh4CG280200 Rh4CG280500 Rh4DG141300 Rh4DG264300 Rh5AG496500 Rh5AG496600 Rh5BG517900 Rh5DG531400 Rh5DG531500
rosa_wichuraiana	Rw5G046060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	279
AccII	CGCG	1 cut(s)	292
AciI	CCGC	1 cut(s)	290
AclWI	GGATC	2 cut(s)	110, 135
AfiI	CCNNNNNNNGG	1 cut(s)	97
AgsI	TTSAA	1 cut(s)	104
Alw26I	GTCTC	1 cut(s)	183
AlwI	GGATC	2 cut(s)	110, 135
Ama87I	CYCGRG	1 cut(s)	279
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	6
AvaI	CYCGRG	1 cut(s)	279
AvaII	GGWCC	1 cut(s)	6
AxyI	CCTNAGG	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	219
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	2 cut(s)	56, 150
BisI	GCNGC	2 cut(s)	208, 290
BlsI	GCNGC	2 cut(s)	209, 291
Bme18I	GGWCC	1 cut(s)	6
BmeT110I	CYCGRG	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	6
BmsI	GCATC	3 cut(s)	55, 59, 208
BsaXI	ACNNNNNCTCC	2 cut(s)	277, 307
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse21I	CCTNAGG	1 cut(s)	138
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMII	CTCAG	3 cut(s)	129, 194, 297
BseXI	GCAGC	1 cut(s)	219
Bsh1236I	CGCG	1 cut(s)	292
BshFI	GGCC	1 cut(s)	289
BsiHKCI	CYCGRG	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	1 cut(s)	183
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	1 cut(s)	289
BsoBI	CYCGRG	1 cut(s)	279
Bsp143I	GATC	2 cut(s)	115, 127
BspACI	CCGC	1 cut(s)	290
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	3 cut(s)	130, 193, 298
BspFNI	CGCG	1 cut(s)	292
BspHI	TCATGA	1 cut(s)	322
BspPI	GGATC	2 cut(s)	110, 135
BssMI	GATC	2 cut(s)	115, 127
Bst4CI	ACNGT	3 cut(s)	46, 75, 92
BstC8I	GCNNGC	2 cut(s)	35, 266
BstDEI	CTNAG	3 cut(s)	138, 180, 306
BstFNI	CGCG	1 cut(s)	292
BstKTI	GATC	2 cut(s)	118, 130
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	2 cut(s)	115, 127
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 213
BstUI	CGCG	1 cut(s)	292
BstV1I	GCAGC	1 cut(s)	219
Bsu36I	CCTNAGG	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	289
BtgZI	GCGATG	1 cut(s)	231
Cac8I	GCNNGC	2 cut(s)	35, 266
CciI	TCATGA	1 cut(s)	322
Cfr13I	GGNCC	1 cut(s)	6
CseI	GACGC	1 cut(s)	13
CviAII	CATG	7 cut(s)	86, 227, 235, 248, 323, 341, 345
CviJI	RGCY	5 cut(s)	33, 62, 289, 328, 336
CviKI_1	RGCY	5 cut(s)	33, 62, 289, 328, 336
DdeI	CTNAG	3 cut(s)	138, 180, 306
DpnI	GATC	2 cut(s)	117, 129
DpnII	GATC	2 cut(s)	115, 127
Eco47I	GGWCC	1 cut(s)	6
Eco81I	CCTNAGG	1 cut(s)	138
Eco88I	CYCGRG	1 cut(s)	279
EcoT22I	ATGCAT	1 cut(s)	346
FaeI	CATG	7 cut(s)	89, 230, 238, 251, 326, 344, 348
FaiI	YATR	9 cut(s)	11, 87, 125, 228, 236, 249, 324, 342, 346
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	7 cut(s)	85, 226, 234, 247, 322, 340, 344
Fnu4HI	GCNGC	2 cut(s)	208, 290
Fsp4HI	GCNGC	2 cut(s)	208, 290
FspBI	CTAG	2 cut(s)	56, 150
GluI	GCNGC	2 cut(s)	208, 290
HaeIII	GGCC	1 cut(s)	289
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	7 cut(s)	89, 230, 238, 251, 326, 344, 348
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	2 cut(s)	244, 308
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188III	TCNNGA	2 cut(s)	56, 323
Hpy8I	GTNNAC	1 cut(s)	42
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	347
HpyCH4III	ACNGT	3 cut(s)	46, 75, 92
HpyCH4V	TGCA	4 cut(s)	85, 161, 221, 344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 213
HpyF3I	CTNAG	3 cut(s)	138, 180, 306
Hsp92II	CATG	7 cut(s)	89, 230, 238, 251, 326, 344, 348
Kzo9I	GATC	2 cut(s)	115, 127
LpnPI	CCDG	4 cut(s)	150, 200, 278, 282
Lsp1109I	GCAGC	1 cut(s)	219
LweI	GCATC	3 cut(s)	55, 59, 208
MaeI	CTAG	2 cut(s)	56, 150
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	2 cut(s)	117, 129
MboI	GATC	2 cut(s)	115, 127
MluCI	AATT	1 cut(s)	170
MlyI	GAGTC	1 cut(s)	317
MnlI	CCTC	4 cut(s)	133, 275, 279, 288
Mph1103I	ATGCAT	1 cut(s)	346
MseI	TTAA	1 cut(s)	108
MvnI	CGCG	1 cut(s)	292
MwoI	GCNNNNNNNGC	2 cut(s)	30, 213
NdeII	GATC	2 cut(s)	115, 127
NlaIII	CATG	7 cut(s)	89, 230, 238, 251, 326, 344, 348
NmuCI	GTSAC	1 cut(s)	92
NsiI	ATGCAT	1 cut(s)	346
PaeR7I	CTCGAG	1 cut(s)	279
PagI	TCATGA	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	2 cut(s)	209, 291
PleI	GAGTC	1 cut(s)	316
PpsI	GAGTC	1 cut(s)	316
PspPI	GGNCC	1 cut(s)	6
PspXI	VCTCGAGB	1 cut(s)	279
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	2 cut(s)	208, 290
Sau3AI	GATC	2 cut(s)	115, 127
Sau96I	GGNCC	1 cut(s)	6
SchI	GAGTC	1 cut(s)	317
SetI	ASST	2 cut(s)	144, 280
SfaNI	GCATC	3 cut(s)	55, 59, 208
Sfr274I	CTCGAG	1 cut(s)	279
SinI	GGWCC	1 cut(s)	6
SlaI	CTCGAG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	279
SmoI	CTYRAG	1 cut(s)	279
Sse9I	AATT	1 cut(s)	170
SsiI	CCGC	1 cut(s)	290
SspMI	CTAG	2 cut(s)	56, 150
TaaI	ACNGT	3 cut(s)	46, 75, 92
TaqI	TCGA	1 cut(s)	280
TasI	AATT	1 cut(s)	170
TauI	GCSGC	1 cut(s)	292
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	92
TseI	GCWGC	1 cut(s)	207
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	5 cut(s)	236, 251, 288, 311, 329
VpaK11BI	GGWCC	1 cut(s)	6
XbaI	TCTAGA	1 cut(s)	55
XhoI	CTCGAG	1 cut(s)	279
XspI	CTAG	2 cut(s)	56, 150
Zsp2I	ATGCAT	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.