Rh4CG280200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0004229
Physical Location & Seq
Reverse (-)
53690646 .. 53692105
1460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG280200.1

Sequence Viewer

Length: 447 bp
ATGGTGCCACAGCATTCTGAATGTGATACCACCACCTTCACTTCTTTGGTGGCCTTGTATACTCTCGACAGACATGATTATAAATTCTGCTTCAGATCGATATTAAAAGTACCTAAAAGTGCAGGATTGATTACCATCATGAGGACCATACTTACCATTTGCGTCGTTGGCTTAGTGTTGACGGTGGCATCTCTAGAAGCCGATGCTAAACGGTTTGTTTTGCATGACCGTCACTTAAAAACTGATCCAAATATGGATCAAAACCCTGAGGTTCTTGCTAGTGGTGGTGCAAAAGATCACTCTCAGTCTCTGTCCCAGACCGCAAGTAAGGGTAGCAGCAGCAGCGACGCAAAGCATGATGATCATGATGACGATATTCTTGGTAAGTACAGTAATGGCGCTACAACCCAATGCATGGCAGATAAAAAGAGGCCTCATTGTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.28

Weight (kDa)

7.07

Isoelectric Point (pI)

37.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 81
AccB1I GGYRCC 1 cut(s) 4
AccB7I CCANNNNNTGG 1 cut(s) 415
AccI GTMKAC 1 cut(s) 59
AciI CCGC 1 cut(s) 321
AclWI GGATC 2 cut(s) 239, 264
AcsI RAATTY 1 cut(s) 83
AcuI CTGAAG 1 cut(s) 76
AfaI GTAC 2 cut(s) 111, 389
AfiI CCNNNNNNNGG 2 cut(s) 141, 415
Alw26I GTCTC 1 cut(s) 312
AlwI GGATC 2 cut(s) 239, 264
AlwNI CAGNNNCTG 1 cut(s) 310
AoxI GGCC 2 cut(s) 51, 431
ApeKI GCWGC 3 cut(s) 336, 339, 342
ApoI RAATTY 1 cut(s) 83
AspLEI GCGC 1 cut(s) 401
AspS9I GGNCC 1 cut(s) 144
AvaII GGWCC 1 cut(s) 144
AxyI CCTNAGG 1 cut(s) 267
BanI GGYRCC 1 cut(s) 4
BbvI GCAGC 3 cut(s) 348, 351, 354
BccI CCATC 1 cut(s) 143
BclI TGATCA 1 cut(s) 361
BcoDI GTCTC 1 cut(s) 312
BfaI CTAG 2 cut(s) 194, 279
BfoI RGCGCY 1 cut(s) 402
BisI GCNGC 3 cut(s) 337, 340, 343
BlsI GCNGC 3 cut(s) 338, 341, 344
Bme18I GGWCC 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 144
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 193, 197
Bsa29I ATCGAT 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 134
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 415
Bse21I CCTNAGG 1 cut(s) 267
Bse8I GATNNNNATC 1 cut(s) 134
BseCI ATCGAT 1 cut(s) 98
BseJI GATNNNNATC 1 cut(s) 134
BseLI CCNNNNNNNGG 2 cut(s) 141, 415
BseMII CTCAG 2 cut(s) 258, 317
BseXI GCAGC 3 cut(s) 348, 351, 354
BsgI GTGCAG 1 cut(s) 141
BshFI GGCC 2 cut(s) 53, 433
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 98
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 2 cut(s) 141, 415
BsmAI GTCTC 1 cut(s) 312
BsmFI GGGAC 1 cut(s) 298
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 2 cut(s) 53, 433
Bsp143I GATC 5 cut(s) 95, 244, 256, 295, 361
BspACI CCGC 1 cut(s) 321
BspANI GGCC 2 cut(s) 53, 433
BspCNI CTCAG 2 cut(s) 259, 316
BspDI ATCGAT 1 cut(s) 98
BspHI TCATGA 2 cut(s) 138, 364
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 2 cut(s) 239, 264
BspT107I GGYRCC 1 cut(s) 4
BssMI GATC 5 cut(s) 95, 244, 256, 295, 361
BssNAI GTATAC 1 cut(s) 60
Bst1107I GTATAC 1 cut(s) 60
Bst4CI ACNGT 4 cut(s) 184, 213, 230, 392
BstDEI CTNAG 3 cut(s) 172, 267, 303
BstH2I RGCGCY 1 cut(s) 402
BstHHI GCGC 1 cut(s) 401
BstKTI GATC 5 cut(s) 98, 247, 259, 298, 364
BstMAI GTCTC 1 cut(s) 312
BstMBI GATC 5 cut(s) 95, 244, 256, 295, 361
BstMWI GCNNNNNNNGC 2 cut(s) 168, 342
BstV1I GCAGC 3 cut(s) 348, 351, 354
BstZ17I GTATAC 1 cut(s) 60
Bsu15I ATCGAT 1 cut(s) 98
Bsu36I CCTNAGG 1 cut(s) 267
BsuRI GGCC 2 cut(s) 53, 433
BsuTUI ATCGAT 1 cut(s) 98
CaiI CAGNNNCTG 1 cut(s) 310
CciI TCATGA 2 cut(s) 138, 364
CfoI GCGC 1 cut(s) 401
Cfr13I GGNCC 1 cut(s) 144
ClaI ATCGAT 1 cut(s) 98
CseI GACGC 2 cut(s) 151, 356
Csp6I GTAC 2 cut(s) 110, 388
CviAII CATG 6 cut(s) 74, 139, 224, 356, 365, 415
CviJI RGCY 4 cut(s) 53, 171, 200, 433
CviKI_1 RGCY 4 cut(s) 53, 171, 200, 433
CviQI GTAC 2 cut(s) 110, 388
DdeI CTNAG 3 cut(s) 172, 267, 303
DpnI GATC 5 cut(s) 97, 246, 258, 297, 363
DpnII GATC 5 cut(s) 95, 244, 256, 295, 361
Eco147I AGGCCT 1 cut(s) 433
Eco47I GGWCC 1 cut(s) 144
Eco57I CTGAAG 1 cut(s) 76
Eco81I CCTNAGG 1 cut(s) 267
EcoT22I ATGCAT 1 cut(s) 416
FaeI CATG 6 cut(s) 77, 142, 227, 359, 368, 418
FaqI GGGAC 1 cut(s) 298
FatI CATG 6 cut(s) 73, 138, 223, 355, 364, 414
FbaI TGATCA 1 cut(s) 361
FblI GTMKAC 1 cut(s) 59
Fnu4HI GCNGC 3 cut(s) 337, 340, 343
Fsp4HI GCNGC 3 cut(s) 337, 340, 343
FspBI CTAG 2 cut(s) 194, 279
GlaI GCGC 1 cut(s) 400
GluI GCNGC 3 cut(s) 337, 340, 343
HaeII RGCGCY 1 cut(s) 402
HaeIII GGCC 2 cut(s) 53, 433
HgaI GACGC 2 cut(s) 151, 356
HhaI GCGC 1 cut(s) 401
Hin1II CATG 6 cut(s) 77, 142, 227, 359, 368, 418
Hin6I GCGC 1 cut(s) 399
HinP1I GCGC 1 cut(s) 399
HincII GTYRAC 1 cut(s) 180
HindII GTYRAC 1 cut(s) 180
Hpy166II GTNNAC 2 cut(s) 60, 180
Hpy188I TCNGA 2 cut(s) 19, 95
Hpy188III TCNNGA 4 cut(s) 65, 139, 194, 365
Hpy8I GTNNAC 2 cut(s) 60, 180
Hpy99I CGWCG 2 cut(s) 167, 350
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 4 cut(s) 184, 213, 230, 392
HpyCH4V TGCA 4 cut(s) 122, 223, 290, 414
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 342
HpyF3I CTNAG 3 cut(s) 172, 267, 303
Hsp92II CATG 6 cut(s) 77, 142, 227, 359, 368, 418
HspAI GCGC 1 cut(s) 399
Ksp22I TGATCA 1 cut(s) 361
Kzo9I GATC 5 cut(s) 95, 244, 256, 295, 361
LpnPI CCDG 3 cut(s) 108, 279, 329
Lsp1109I GCAGC 3 cut(s) 348, 351, 354
LweI GCATC 2 cut(s) 193, 197
MaeI CTAG 2 cut(s) 194, 279
MaeIII GTNAC 1 cut(s) 230
MalI GATC 5 cut(s) 97, 246, 258, 297, 363
MboI GATC 5 cut(s) 95, 244, 256, 295, 361
MluCI AATT 1 cut(s) 83
MnlI CCTC 4 cut(s) 135, 262, 423, 444
Mph1103I ATGCAT 1 cut(s) 416
MseI TTAA 3 cut(s) 104, 236, 445
Mva1269I GAATGC 1 cut(s) 13
MwoI GCNNNNNNNGC 2 cut(s) 168, 342
NdeII GATC 5 cut(s) 95, 244, 256, 295, 361
NlaIII CATG 6 cut(s) 77, 142, 227, 359, 368, 418
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 230
NsiI ATGCAT 1 cut(s) 416
PagI TCATGA 2 cut(s) 138, 364
PceI AGGCCT 1 cut(s) 433
PctI GAATGC 1 cut(s) 13
PflMI CCANNNNNTGG 1 cut(s) 415
PkrI GCNGC 3 cut(s) 338, 341, 344
PsiI TTATAA 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 144
PstNI CAGNNNCTG 1 cut(s) 310
RsaI GTAC 2 cut(s) 111, 389
RsaNI GTAC 2 cut(s) 110, 388
SaqAI TTAA 3 cut(s) 104, 236, 445
SatI GCNGC 3 cut(s) 337, 340, 343
Sau3AI GATC 5 cut(s) 95, 244, 256, 295, 361
Sau96I GGNCC 1 cut(s) 144
SetI ASST 3 cut(s) 38, 115, 273
SfaNI GCATC 2 cut(s) 193, 197
SinI GGWCC 1 cut(s) 144
Sse9I AATT 1 cut(s) 83
SseBI AGGCCT 1 cut(s) 433
SsiI CCGC 1 cut(s) 321
SspMI CTAG 2 cut(s) 194, 279
StuI AGGCCT 1 cut(s) 433
TaaI ACNGT 4 cut(s) 184, 213, 230, 392
TaqI TCGA 2 cut(s) 66, 98
TasI AATT 1 cut(s) 83
TatI WGTACW 1 cut(s) 387
Tru1I TTAA 3 cut(s) 104, 236, 445
Tru9I TTAA 3 cut(s) 104, 236, 445
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 3 cut(s) 336, 339, 342
Tsp45I GTSAC 1 cut(s) 230
Van91I CCANNNNNTGG 1 cut(s) 415
VpaK11BI GGWCC 1 cut(s) 144
XapI RAATTY 1 cut(s) 83
XbaI TCTAGA 1 cut(s) 193
XmiI GTMKAC 1 cut(s) 59
XspI CTAG 2 cut(s) 194, 279
Zsp2I ATGCAT 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.