Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004229

Physical Location & Seq

Genomic Coordinates Reverse (-)

48275292 .. 48286788

Gene Structure 11497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG264300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGATGAAGAAGGTGCGAACCCAAGTTATGGAAATTACGGAGACACTGGACATTTCTCGAAACCTGCACGATTCATTACGTACCATCATGAGGACCATACTTGTCATATGCGCTATTGGCTTTGTGTTGATGGTGTCATCTCTGCAAGCCGATGCTAAACGGTTTGTTTTGAATGACCGTCACTTGGTTCAAGTTAAGAATGAGCCAACTCTTACTAGTGGCGGTGCAAAAGATCAGTCTCAGTCTCAGCCCCGAACCACAAACAAGGGTAGCAGCAACAGCGATGCTAAATATGATGATCTTGCCGACGATGATGCAAACGAGACTTATGATGCTGCTTCAGATCCATTAAATATTTCTAGAATTGCAGGGTATTCTATTGATTACCACCATGAGGACCATACTTACCATATGCTTCGTTGGCTTTGTATTGATGGTGGATTTGTTAAGATGAAGGTTAATGATGAGAGCAAAGGTGAAAGCAAGGGTGAGGATGGTTCTAGCACATCATCTCTTGAGGCTGGTCTGTGTGGAAATATAGCTAGTACGGATTCTGTGCTTAACAGCCCAAGCAACACTGTTGCACGTGGTCTTGGTGTCATGGATACCTATCTACCTCTTAATAAATTGGCTATGCATTTGGTTAATCACAATGACAAGACAAGGGAGATTGGCCAGACGGGTTGGAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

25.49

Weight (kDa)

5.73

Isoelectric Point (pI)

48.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004229)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20030 FvH4_4g20300
malus_domestica	MD16G1151900.v1.1
prunus_persica	Prupe.1G115400_v2.0.a1
rosa_laevigata	RLG00000007343 RLG00000008687 RLG00000013101 RLG00000036563
rosa_roxburghii	Rroxscaffold_1G00006070 Rroxscaffold_5G00352500 Rroxscaffold_5G00367720 Rroxscaffold_5G00367730
rosa_rugosa	Rorug04G0082500 Rorug04G0082600 Rorug04G0082700 Rorug04G0205600 Rorug04G0205700 Rorug05G0439500 Rorug05G0439600
rosa_samantha	Rh4AG147200 Rh4AG262400 Rh4AG262500 Rh4CG154000 Rh4CG280200 Rh4CG280500 Rh4DG141300 Rh4DG264300 Rh5AG496500 Rh5AG496600 Rh5BG517900 Rh5DG531400 Rh5DG531500
rosa_wichuraiana	Rw5G046060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	72
AccB7I	CCANNNNNTGG	1 cut(s)	28
AciI	CCGC	1 cut(s)	222
AclWI	GGATC	1 cut(s)	338
AcoI	YGGCCR	1 cut(s)	673
AcuI	CTGAAG	1 cut(s)	324
AcvI	CACGTG	1 cut(s)	587
AfaI	GTAC	2 cut(s)	82, 547
AfiI	CCNNNNNNNGG	4 cut(s)	28, 90, 184, 394
AgsI	TTSAA	2 cut(s)	172, 191
AhlI	ACTAGT	1 cut(s)	215
AluBI	AGCT	1 cut(s)	542
AluI	AGCT	1 cut(s)	542
Alw26I	GTCTC	4 cut(s)	35, 243, 249, 317
AlwI	GGATC	1 cut(s)	338
AoxI	GGCC	1 cut(s)	673
ApeKI	GCWGC	2 cut(s)	273, 335
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	2 cut(s)	93, 397
AsuHPI	GGTGA	2 cut(s)	488, 500
AvaII	GGWCC	2 cut(s)	93, 397
BalI	TGGCCA	1 cut(s)	675
BbrPI	CACGTG	1 cut(s)	587
BbvI	GCAGC	2 cut(s)	285, 322
BccI	CCATC	4 cut(s)	92, 124, 428, 488
BcgI	CGANNNNNNTGC	2 cut(s)	296, 330
BciVI	GTATCC	1 cut(s)	598
BcoDI	GTCTC	4 cut(s)	35, 243, 249, 317
BcuI	ACTAGT	1 cut(s)	215
BfaI	CTAG	4 cut(s)	216, 360, 501, 543
BfuAI	ACCTGC	1 cut(s)	72
BfuI	GTATCC	1 cut(s)	598
BisI	GCNGC	2 cut(s)	274, 336
BlsI	GCNGC	2 cut(s)	275, 337
Bme18I	GGWCC	2 cut(s)	93, 397
BmgT120I	GGNCC	2 cut(s)	93, 397
BmsI	GCATC	4 cut(s)	142, 274, 304, 322
BpuEI	CTTGAG	1 cut(s)	536
BsaAI	YACGTR	2 cut(s)	80, 587
BsaBI	GATNNNNATC	1 cut(s)	609
Bsc4I	CCNNNNNNNGG	4 cut(s)	28, 90, 184, 394
Bse1I	ACTGG	1 cut(s)	51
Bse8I	GATNNNNATC	1 cut(s)	609
BseGI	GGATG	1 cut(s)	499
BseJI	GATNNNNATC	1 cut(s)	609
BseLI	CCNNNNNNNGG	4 cut(s)	28, 90, 184, 394
BseMII	CTCAG	2 cut(s)	254, 260
BseNI	ACTGG	1 cut(s)	51
BseXI	GCAGC	2 cut(s)	285, 322
BsgI	GTGCAG	1 cut(s)	50
BshFI	GGCC	1 cut(s)	675
BslI	CCNNNNNNNGG	4 cut(s)	28, 90, 184, 394
BsmAI	GTCTC	4 cut(s)	35, 243, 249, 317
BsnI	GGCC	1 cut(s)	675
Bsp143I	GATC	3 cut(s)	232, 298, 343
BspACI	CCGC	1 cut(s)	222
BspANI	GGCC	1 cut(s)	675
BspCNI	CTCAG	2 cut(s)	253, 259
BspHI	TCATGA	1 cut(s)	87
BspMI	ACCTGC	1 cut(s)	72
BspPI	GGATC	1 cut(s)	338
BsrI	ACTGG	1 cut(s)	51
BssMI	GATC	3 cut(s)	232, 298, 343
Bst4CI	ACNGT	3 cut(s)	162, 179, 580
BstBAI	YACGTR	2 cut(s)	80, 587
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	2 cut(s)	240, 246
BstF5I	GGATG	1 cut(s)	499
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	3 cut(s)	235, 301, 346
BstMAI	GTCTC	4 cut(s)	35, 243, 249, 317
BstMBI	GATC	3 cut(s)	232, 298, 343
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 279, 421
BstSNI	TACGTA	1 cut(s)	80
BstV1I	GCAGC	2 cut(s)	285, 322
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuI	GTATCC	1 cut(s)	598
BsuRI	GGCC	1 cut(s)	675
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	499
BtsIMutI	CAGTG	2 cut(s)	44, 576
BveI	ACCTGC	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	147
CciI	TCATGA	1 cut(s)	87
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	2 cut(s)	93, 397
Csp6I	GTAC	2 cut(s)	81, 546
CviAII	CATG	3 cut(s)	88, 392, 601
CviQI	GTAC	2 cut(s)	81, 546
DdeI	CTNAG	2 cut(s)	240, 246
DpnI	GATC	3 cut(s)	234, 300, 345
DpnII	GATC	3 cut(s)	232, 298, 343
EaeI	YGGCCR	1 cut(s)	673
Eco105I	TACGTA	1 cut(s)	80
Eco47I	GGWCC	2 cut(s)	93, 397
Eco57I	CTGAAG	1 cut(s)	324
Eco72I	CACGTG	1 cut(s)	587
EcoT22I	ATGCAT	1 cut(s)	639
FaeI	CATG	3 cut(s)	91, 395, 604
FatI	CATG	3 cut(s)	87, 391, 600
FauNDI	CATATG	2 cut(s)	107, 411
Fnu4HI	GCNGC	2 cut(s)	274, 336
FokI	GGATG	1 cut(s)	506
Fsp4HI	GCNGC	2 cut(s)	274, 336
FspBI	CTAG	4 cut(s)	216, 360, 501, 543
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	2 cut(s)	274, 336
HaeIII	GGCC	1 cut(s)	675
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	3 cut(s)	91, 395, 604
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HinfI	GANTC	2 cut(s)	71, 551
HphI	GGTGA	2 cut(s)	488, 500
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	4 cut(s)	57, 88, 360, 515
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	2 cut(s)	4, 448
HpyCH4III	ACNGT	3 cut(s)	162, 179, 580
HpyCH4IV	ACGT	2 cut(s)	79, 586
HpyCH4V	TGCA	7 cut(s)	67, 145, 227, 317, 368, 584, 637
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 279, 421
HpyF3I	CTNAG	2 cut(s)	240, 246
HpySE526I	ACGT	2 cut(s)	79, 586
Hsp92II	CATG	3 cut(s)	91, 395, 604
HspAI	GCGC	1 cut(s)	111
Kzo9I	GATC	3 cut(s)	232, 298, 343
LpnPI	CCDG	5 cut(s)	32, 77, 354, 507, 689
Lsp1109I	GCAGC	2 cut(s)	285, 322
LweI	GCATC	4 cut(s)	142, 274, 304, 322
MaeI	CTAG	4 cut(s)	216, 360, 501, 543
MaeII	ACGT	2 cut(s)	79, 586
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	3 cut(s)	234, 300, 345
MboI	GATC	3 cut(s)	232, 298, 343
MboII	GAAGA	1 cut(s)	19
MflI	RGATCY	1 cut(s)	343
MlsI	TGGCCA	1 cut(s)	675
MluCI	AATT	3 cut(s)	33, 363, 626
MluNI	TGGCCA	1 cut(s)	675
MmeI	TCCRAC	1 cut(s)	665
MnlI	CCTC	5 cut(s)	84, 388, 484, 511, 627
Mox20I	TGGCCA	1 cut(s)	675
Mph1103I	ATGCAT	1 cut(s)	639
MscI	TGGCCA	1 cut(s)	675
MseI	TTAA	7 cut(s)	195, 350, 447, 459, 561, 621, 645
Msp20I	TGGCCA	1 cut(s)	675
MwoI	GCNNNNNNNGC	3 cut(s)	117, 279, 421
NdeI	CATATG	2 cut(s)	107, 411
NdeII	GATC	3 cut(s)	232, 298, 343
NlaIII	CATG	3 cut(s)	91, 395, 604
NmuCI	GTSAC	1 cut(s)	179
NsiI	ATGCAT	1 cut(s)	639
PagI	TCATGA	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	71, 551
PflMI	CCANNNNNTGG	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	275, 337
PmaCI	CACGTG	1 cut(s)	587
PmlI	CACGTG	1 cut(s)	587
Ppu21I	YACGTR	2 cut(s)	80, 587
PspCI	CACGTG	1 cut(s)	587
PspPI	GGNCC	2 cut(s)	93, 397
PsuI	RGATCY	1 cut(s)	343
RsaI	GTAC	2 cut(s)	82, 547
RsaNI	GTAC	2 cut(s)	81, 546
SaqAI	TTAA	7 cut(s)	195, 350, 447, 459, 561, 621, 645
SatI	GCNGC	2 cut(s)	274, 336
Sau3AI	GATC	3 cut(s)	232, 298, 343
Sau96I	GGNCC	2 cut(s)	93, 397
SetI	ASST	9 cut(s)	15, 66, 82, 459, 478, 544, 589, 611, 619
SfaNI	GCATC	4 cut(s)	142, 274, 304, 322
SinI	GGWCC	2 cut(s)	93, 397
SmlI	CTYRAG	1 cut(s)	515
SmoI	CTYRAG	1 cut(s)	515
SnaBI	TACGTA	1 cut(s)	80
SpeI	ACTAGT	1 cut(s)	215
Sse9I	AATT	3 cut(s)	33, 363, 626
SsiI	CCGC	1 cut(s)	222
SspI	AATATT	1 cut(s)	355
SspMI	CTAG	4 cut(s)	216, 360, 501, 543
TaaI	ACNGT	3 cut(s)	162, 179, 580
TaiI	ACGT	2 cut(s)	82, 589
TaqI	TCGA	1 cut(s)	58
TasI	AATT	3 cut(s)	33, 363, 626
TfiI	GAWTC	2 cut(s)	71, 551
Tru1I	TTAA	7 cut(s)	195, 350, 447, 459, 561, 621, 645
Tru9I	TTAA	7 cut(s)	195, 350, 447, 459, 561, 621, 645
TscAI	CASTG	2 cut(s)	51, 583
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	2 cut(s)	273, 335
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	3 cut(s)	20, 63, 467
TspGWI	ACGGA	2 cut(s)	53, 563
TspRI	CASTG	2 cut(s)	51, 583
Van91I	CCANNNNNTGG	1 cut(s)	28
VpaK11BI	GGWCC	2 cut(s)	93, 397
XbaI	TCTAGA	1 cut(s)	359
XspI	CTAG	4 cut(s)	216, 360, 501, 543
Zsp2I	ATGCAT	1 cut(s)	639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.