RLG00000036563

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004229
Physical Location & Seq
Forward (+)
81990163 .. 81990519
357 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036563

Sequence Viewer

Length: 357 bp
ATGAGGACCATTCTGATCATATGCATCGTTGGCTTTGTGTTGATGGTGGCATCTCTACAAGCCGATGCTAAACGGTTTGTTTTGCGCGACCGTCACTTGGCTCAAGTTACAAATGATCCAAATATGGATCAAGCCCCTGAGGTTCTTGCTAGTGGTGATGCAAAAGATCAGTCTCAGTCTCAGTCCCAGACCACAAGCAAGGTTAGCAACAACAGCGATGCTCAGCATGATGATCATGCCGACGATGATGCAAACGAGACACATGGTAAGTCCGGACATGGCTCTTCCGAAAGTAACTCTCGCAATGGATATGGACCCAAATGCAGTGGAGATGGAAAGAGGCCTCATTGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.69

Weight (kDa)

5.78

Isoelectric Point (pI)

38.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 87
AccIII TCCGGA 1 cut(s) 272
AclWI GGATC 2 cut(s) 110, 135
AfiI CCNNNNNNNGG 1 cut(s) 97
Alw26I GTCTC 3 cut(s) 177, 183, 251
AlwI GGATC 2 cut(s) 110, 135
Aor13HI TCCGGA 1 cut(s) 272
AoxI GGCC 1 cut(s) 341
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AspLEI GCGC 1 cut(s) 87
AspS9I GGNCC 2 cut(s) 6, 314
AsuHPI GGTGA 1 cut(s) 167
AvaII GGWCC 2 cut(s) 6, 314
AxyI CCTNAGG 1 cut(s) 138
BccI CCATC 2 cut(s) 37, 326
BcgI CGANNNNNNTGC 2 cut(s) 230, 264
BclI TGATCA 2 cut(s) 15, 232
BcoDI GTCTC 3 cut(s) 177, 183, 251
BfaI CTAG 1 cut(s) 150
BlpI GCTNAGC 1 cut(s) 222
Bme18I GGWCC 2 cut(s) 6, 314
BmgT120I GGNCC 2 cut(s) 6, 314
BmiI GGNNCC 1 cut(s) 316
BmsI GCATC 6 cut(s) 33, 55, 59, 148, 208, 238
Bpu1102I GCTNAGC 1 cut(s) 222
BpuEI CTTGAG 1 cut(s) 87
BsaWI WCCGGW 1 cut(s) 272
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse21I CCTNAGG 1 cut(s) 138
Bse3DI GCAATG 1 cut(s) 310
BseAI TCCGGA 1 cut(s) 272
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMI GCAATG 1 cut(s) 310
BseMII CTCAG 4 cut(s) 129, 188, 194, 236
Bsh1236I CGCG 1 cut(s) 87
Bsh1285I CGRYCG 1 cut(s) 91
BshFI GGCC 1 cut(s) 343
BsiEI CGRYCG 1 cut(s) 91
BsiSI CCGG 1 cut(s) 273
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 3 cut(s) 177, 183, 251
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 1 cut(s) 343
Bsp13I TCCGGA 1 cut(s) 272
Bsp143I GATC 5 cut(s) 15, 115, 127, 166, 232
Bsp1720I GCTNAGC 1 cut(s) 222
BspANI GGCC 1 cut(s) 343
BspCNI CTCAG 4 cut(s) 130, 187, 193, 235
BspEI TCCGGA 1 cut(s) 272
BspFNI CGCG 1 cut(s) 87
BspLI GGNNCC 1 cut(s) 316
BspPI GGATC 2 cut(s) 110, 135
BspQI GCTCTTC 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 310
BssMI GATC 5 cut(s) 15, 115, 127, 166, 232
Bst4CI ACNGT 2 cut(s) 75, 92
Bst6I CTCTTC 1 cut(s) 289
BstDEI CTNAG 4 cut(s) 138, 174, 180, 222
BstFNI CGCG 1 cut(s) 87
BstHHI GCGC 1 cut(s) 87
BstKTI GATC 5 cut(s) 18, 118, 130, 169, 235
BstMAI GTCTC 3 cut(s) 177, 183, 251
BstMBI GATC 5 cut(s) 15, 115, 127, 166, 232
BstMCI CGRYCG 1 cut(s) 91
BstMWI GCNNNNNNNGC 3 cut(s) 30, 204, 213
BstUI CGCG 1 cut(s) 87
Bsu36I CCTNAGG 1 cut(s) 138
BsuRI GGCC 1 cut(s) 343
BtgZI GCGATG 1 cut(s) 231
BtsI GCAGTG 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 331
CfoI GCGC 1 cut(s) 87
Cfr13I GGNCC 2 cut(s) 6, 314
CspCI CAANNNNNGTGG 2 cut(s) 307, 342
CviAII CATG 4 cut(s) 227, 236, 263, 278
CviJI RGCY 6 cut(s) 33, 62, 101, 134, 282, 343
CviKI_1 RGCY 6 cut(s) 33, 62, 101, 134, 282, 343
DdeI CTNAG 4 cut(s) 138, 174, 180, 222
DpnI GATC 5 cut(s) 17, 117, 129, 168, 234
DpnII GATC 5 cut(s) 15, 115, 127, 166, 232
Eam1104I CTCTTC 1 cut(s) 289
EarI CTCTTC 1 cut(s) 289
Eco147I AGGCCT 1 cut(s) 343
Eco47I GGWCC 2 cut(s) 6, 314
Eco81I CCTNAGG 1 cut(s) 138
EcoT22I ATGCAT 1 cut(s) 26
FaeI CATG 4 cut(s) 230, 239, 266, 281
FaiI YATR 8 cut(s) 20, 22, 125, 228, 237, 264, 279, 312
FaqI GGGAC 1 cut(s) 169
FatI CATG 4 cut(s) 226, 235, 262, 277
FauNDI CATATG 1 cut(s) 20
FbaI TGATCA 2 cut(s) 15, 232
FspBI CTAG 1 cut(s) 150
GlaI GCGC 1 cut(s) 86
HaeIII GGCC 1 cut(s) 343
HapII CCGG 1 cut(s) 273
HhaI GCGC 1 cut(s) 87
Hin1II CATG 4 cut(s) 230, 239, 266, 281
Hin6I GCGC 1 cut(s) 85
HinP1I GCGC 1 cut(s) 85
HpaII CCGG 1 cut(s) 273
HphI GGTGA 1 cut(s) 167
Hpy188I TCNGA 2 cut(s) 15, 289
Hpy188III TCNNGA 1 cut(s) 273
Hpy99I CGWCG 1 cut(s) 245
HpyCH4III ACNGT 2 cut(s) 75, 92
HpyCH4V TGCA 4 cut(s) 24, 161, 251, 324
HpyF10VI GCNNNNNNNGC 3 cut(s) 30, 204, 213
HpyF3I CTNAG 4 cut(s) 138, 174, 180, 222
Hsp92II CATG 4 cut(s) 230, 239, 266, 281
HspAI GCGC 1 cut(s) 85
Kpn2I TCCGGA 1 cut(s) 272
Ksp22I TGATCA 2 cut(s) 15, 232
Kzo9I GATC 5 cut(s) 15, 115, 127, 166, 232
LguI GCTCTTC 1 cut(s) 289
LpnPI CCDG 3 cut(s) 150, 200, 286
LweI GCATC 6 cut(s) 33, 55, 59, 148, 208, 238
MaeI CTAG 1 cut(s) 150
MaeIII GTNAC 3 cut(s) 92, 106, 293
MalI GATC 5 cut(s) 17, 117, 129, 168, 234
MboI GATC 5 cut(s) 15, 115, 127, 166, 232
MboII GAAGA 1 cut(s) 276
MluCI AATT 1 cut(s) 352
MnlI CCTC 3 cut(s) 133, 333, 354
Mph1103I ATGCAT 1 cut(s) 26
MroI TCCGGA 1 cut(s) 272
MseI TTAA 1 cut(s) 355
MspI CCGG 1 cut(s) 273
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 3 cut(s) 30, 204, 213
NdeI CATATG 1 cut(s) 20
NdeII GATC 5 cut(s) 15, 115, 127, 166, 232
NlaIII CATG 4 cut(s) 230, 239, 266, 281
NlaIV GGNNCC 1 cut(s) 316
NmuCI GTSAC 1 cut(s) 92
NsiI ATGCAT 1 cut(s) 26
PceI AGGCCT 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 316
PspPI GGNCC 2 cut(s) 6, 314
SapI GCTCTTC 1 cut(s) 289
SaqAI TTAA 1 cut(s) 355
Sau3AI GATC 5 cut(s) 15, 115, 127, 166, 232
Sau96I GGNCC 2 cut(s) 6, 314
SetI ASST 2 cut(s) 144, 204
SfaNI GCATC 6 cut(s) 33, 55, 59, 148, 208, 238
SinI GGWCC 2 cut(s) 6, 314
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
Sse9I AATT 1 cut(s) 352
SseBI AGGCCT 1 cut(s) 343
SspMI CTAG 1 cut(s) 150
StuI AGGCCT 1 cut(s) 343
TaaI ACNGT 2 cut(s) 75, 92
TasI AATT 1 cut(s) 352
Tru1I TTAA 1 cut(s) 355
Tru9I TTAA 1 cut(s) 355
TscAI CASTG 1 cut(s) 331
TseFI GTSAC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 92
TspRI CASTG 1 cut(s) 331
VpaK11BI GGWCC 2 cut(s) 6, 314
XspI CTAG 1 cut(s) 150
Zsp2I ATGCAT 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.