Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004229

Physical Location & Seq

Genomic Coordinates Reverse (-)

35809071 .. 35813552

Gene Structure 4482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0205600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGAATGGTCAGGATTCTACCAACAGCTGCATGGCCTCACACACTTCAGAGGAATGTTCTCAAAGGGGGAAGAGGCCACTAACTATAGACCTCAACTATCCAGCTCCGTGTGAGGAGGTGGTTCTAAATACCAGATTTGCCTGGGCCAATAGCCAACAAGGTCAAGATGAAGGACATGGTCGGTTAGCACCACAAACTTCAAATGATTGTGAGGTCATTGATGAGGACATTGCTTTCATATCCCCGGTGATATATGCCCAATCCAAGAATAGTTCCAGAAGAAACCTTGAGGTGAGGGACACCATAGCTACCAATACAGAAATGCATAGTGGCCATTCAGATTGGGGTGCTCAGATTCCTCAAATTCCCCTTCATTGCCACAAGCGCAAAAGAACTTTACGAAATCAAGCAGTTTTGAATTGGGAGCTTCACTTTAGCTCAGAAGATGGTGACAAGAACAAGATAGAGGAAGTACCTTCTCCTGAGCTTCCTGAGAGCACACCACCTCAAGAGATACCTTCCTTCAGCTGCCCAATATGTTTGGGCCCTTTAAGTGAAGAAACATCAACGAAATGTGGTCACATCTTCTGCAAGATGTGTATTGAAGCATCAATAAAAGTTCAGCACAAATGCCCAACTTGTCGTAAAAAGCTTAGAATGAAAGACACCATCAGGGTGTACCTTCCTACCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210

Pfam Domains

Protein Families

UDPGT

Protein Analysis

231

Amino Acids

25.99

Weight (kDa)

6.31

Isoelectric Point (pI)

72.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	176 - 215	5.9e-09	Ring finger domain
zf-C3HC4_2	PF13923	177 - 214	1.7e-09	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	177 - 214	3.8e-09	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004229)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20030 FvH4_4g20300
malus_domestica	MD16G1151900.v1.1
prunus_persica	Prupe.1G115400_v2.0.a1
rosa_laevigata	RLG00000007343 RLG00000008687 RLG00000013101 RLG00000036563
rosa_roxburghii	Rroxscaffold_1G00006070 Rroxscaffold_5G00352500 Rroxscaffold_5G00367720 Rroxscaffold_5G00367730
rosa_rugosa	Rorug04G0082500 Rorug04G0082600 Rorug04G0082700 Rorug04G0205600 Rorug04G0205700 Rorug05G0439500 Rorug05G0439600
rosa_samantha	Rh4AG147200 Rh4AG262400 Rh4AG262500 Rh4CG154000 Rh4CG280200 Rh4CG280500 Rh4DG141300 Rh4DG264300 Rh5AG496500 Rh5AG496600 Rh5BG517900 Rh5DG531400 Rh5DG531500
rosa_wichuraiana	Rw5G046060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	331
AcsI	RAATTY	1 cut(s)	363
AcuI	CTGAAG	2 cut(s)	30, 508
AfaI	GTAC	2 cut(s)	474, 680
AgsI	TTSAA	3 cut(s)	201, 418, 605
AjnI	CCWGG	1 cut(s)	140
AluBI	AGCT	8 cut(s)	27, 104, 308, 427, 438, 487, 528, 652
AluI	AGCT	8 cut(s)	27, 104, 308, 427, 438, 487, 528, 652
Alw21I	GWGCWC	2 cut(s)	352, 500
AoxI	GGCC	5 cut(s)	33, 74, 144, 331, 544
ApaI	GGGCCC	1 cut(s)	548
ApeKI	GCWGC	2 cut(s)	27, 528
ApoI	RAATTY	1 cut(s)	363
AspLEI	GCGC	1 cut(s)	387
AspS9I	GGNCC	3 cut(s)	144, 544, 545
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	3 cut(s)	259, 304, 461
BaeGI	GKGCMC	1 cut(s)	548
BalI	TGGCCA	1 cut(s)	333
BanII	GRGCYC	1 cut(s)	548
Bbv12I	GWGCWC	2 cut(s)	352, 500
BbvI	GCAGC	2 cut(s)	14, 515
BccI	CCATC	2 cut(s)	440, 677
BciT130I	CCWGG	1 cut(s)	142
BcnI	CCSGG	1 cut(s)	245
BfmI	CTRYAG	1 cut(s)	84
BisI	GCNGC	2 cut(s)	28, 529
BlsI	GCNGC	2 cut(s)	29, 530
Bme1390I	CCNGG	2 cut(s)	142, 245
BmgT120I	GGNCC	3 cut(s)	144, 544, 545
BmiI	GGNNCC	1 cut(s)	546
BmrFI	CCNGG	2 cut(s)	142, 245
BmsI	GCATC	1 cut(s)	617
Bpu10I	CCTNAGC	1 cut(s)	483
BpuEI	CTTGAG	2 cut(s)	308, 492
BpuMI	CCSGG	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	141, 243
Bse3DI	GCAATG	2 cut(s)	228, 373
BseBI	CCWGG	1 cut(s)	142
BseDI	CCNNGG	2 cut(s)	141, 243
BseMI	GCAATG	2 cut(s)	228, 373
BseMII	CTCAG	4 cut(s)	365, 453, 474, 483
BseRI	GAGGAG	1 cut(s)	128
BseSI	GKGCMC	1 cut(s)	548
BseXI	GCAGC	2 cut(s)	14, 515
BshFI	GGCC	5 cut(s)	35, 76, 146, 333, 546
BsiHKAI	GWGCWC	2 cut(s)	352, 500
BsiSI	CCGG	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	311
BsmFI	GGGAC	1 cut(s)	311
BsnI	GGCC	5 cut(s)	35, 76, 146, 333, 546
Bsp120I	GGGCCC	1 cut(s)	544
Bsp1286I	GDGCHC	3 cut(s)	352, 500, 548
BspANI	GGCC	5 cut(s)	35, 76, 146, 333, 546
BspCNI	CTCAG	4 cut(s)	364, 452, 475, 484
BspLI	GGNNCC	1 cut(s)	546
BsrDI	GCAATG	2 cut(s)	228, 373
BssECI	CCNNGG	2 cut(s)	141, 243
Bst2UI	CCWGG	1 cut(s)	142
Bst6I	CTCTTC	1 cut(s)	65
BstDEI	CTNAG	5 cut(s)	351, 439, 483, 492, 653
BstHHI	GCGC	1 cut(s)	387
BstMWI	GCNNNNNNNGC	1 cut(s)	384
BstNI	CCWGG	1 cut(s)	142
BstSCI	CCNGG	2 cut(s)	140, 243
BstSFI	CTRYAG	1 cut(s)	84
BstSLI	GKGCMC	1 cut(s)	548
BstV1I	GCAGC	2 cut(s)	14, 515
BsuRI	GGCC	5 cut(s)	35, 76, 146, 333, 546
CfoI	GCGC	1 cut(s)	387
Cfr13I	GGNCC	3 cut(s)	144, 544, 545
Csp6I	GTAC	2 cut(s)	473, 679
CviAII	CATG	2 cut(s)	31, 176
CviQI	GTAC	2 cut(s)	473, 679
DdeI	CTNAG	5 cut(s)	351, 439, 483, 492, 653
EaeI	YGGCCR	1 cut(s)	331
Eam1104I	CTCTTC	1 cut(s)	65
EarI	CTCTTC	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	548
Eco57I	CTGAAG	2 cut(s)	30, 508
EcoO109I	RGGNCCY	1 cut(s)	545
EcoRII	CCWGG	1 cut(s)	140
EcoT22I	ATGCAT	1 cut(s)	327
EcoT38I	GRGCYC	1 cut(s)	548
FaeI	CATG	2 cut(s)	34, 179
FaiI	YATR	9 cut(s)	32, 86, 177, 239, 253, 255, 305, 327, 538
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	2 cut(s)	30, 175
Fnu4HI	GCNGC	2 cut(s)	28, 529
FriOI	GRGCYC	1 cut(s)	548
Fsp4HI	GCNGC	2 cut(s)	28, 529
GlaI	GCGC	1 cut(s)	386
GluI	GCNGC	2 cut(s)	28, 529
HaeIII	GGCC	5 cut(s)	35, 76, 146, 333, 546
HapII	CCGG	1 cut(s)	245
HhaI	GCGC	1 cut(s)	387
Hin1II	CATG	2 cut(s)	34, 179
Hin6I	GCGC	1 cut(s)	385
HinP1I	GCGC	1 cut(s)	385
HindIII	AAGCTT	1 cut(s)	650
HinfI	GANTC	2 cut(s)	14, 355
HpaII	CCGG	1 cut(s)	245
HphI	GGTGA	3 cut(s)	259, 304, 461
Hpy166II	GTNNAC	1 cut(s)	679
Hpy188I	TCNGA	4 cut(s)	49, 340, 354, 442
Hpy188III	TCNNGA	6 cut(s)	11, 164, 276, 482, 491, 509
Hpy8I	GTNNAC	1 cut(s)	679
HpyAV	CCTTC	6 cut(s)	164, 380, 486, 528, 532, 692
HpyCH4V	TGCA	3 cut(s)	30, 325, 591
HpyF10VI	GCNNNNNNNGC	1 cut(s)	384
HpyF3I	CTNAG	5 cut(s)	351, 439, 483, 492, 653
Hsp92II	CATG	2 cut(s)	34, 179
HspAI	GCGC	1 cut(s)	385
LmnI	GCTCC	2 cut(s)	109, 424
LpnPI	CCDG	9 cut(s)	114, 127, 145, 154, 258, 289, 495, 504, 658
Lsp1109I	GCAGC	2 cut(s)	14, 515
LweI	GCATC	1 cut(s)	617
MaeIII	GTNAC	2 cut(s)	449, 578
MboII	GAAGA	5 cut(s)	82, 291, 455, 569, 577
MhlI	GDGCHC	3 cut(s)	352, 500, 548
MlsI	TGGCCA	1 cut(s)	333
MluCI	AATT	2 cut(s)	363, 418
MluNI	TGGCCA	1 cut(s)	333
Mox20I	TGGCCA	1 cut(s)	333
Mph1103I	ATGCAT	1 cut(s)	327
MscI	TGGCCA	1 cut(s)	333
MseI	TTAA	1 cut(s)	551
MslI	CAYNNNNRTG	1 cut(s)	674
Msp20I	TGGCCA	1 cut(s)	333
MspA1I	CMGCKG	2 cut(s)	27, 528
MspI	CCGG	1 cut(s)	245
MspR9I	CCNGG	2 cut(s)	142, 245
MvaI	CCWGG	1 cut(s)	142
MwoI	GCNNNNNNNGC	1 cut(s)	384
NciI	CCSGG	1 cut(s)	245
NlaIII	CATG	2 cut(s)	34, 179
NlaIV	GGNNCC	1 cut(s)	546
NmuCI	GTSAC	2 cut(s)	449, 578
NsiI	ATGCAT	1 cut(s)	327
PfeI	GAWTC	2 cut(s)	14, 355
PflFI	GACNNNGTC	1 cut(s)	177
PkrI	GCNGC	2 cut(s)	29, 530
Psp6I	CCWGG	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	140
PspN4I	GGNNCC	1 cut(s)	546
PspOMI	GGGCCC	1 cut(s)	544
PspPI	GGNCC	3 cut(s)	144, 544, 545
PsyI	GACNNNGTC	1 cut(s)	177
PvuII	CAGCTG	2 cut(s)	27, 528
RsaI	GTAC	2 cut(s)	474, 680
RsaNI	GTAC	2 cut(s)	473, 679
RseI	CAYNNNNRTG	1 cut(s)	674
SaqAI	TTAA	1 cut(s)	551
SatI	GCNGC	2 cut(s)	28, 529
Sau96I	GGNCC	3 cut(s)	144, 544, 545
ScrFI	CCNGG	2 cut(s)	142, 245
SduI	GDGCHC	3 cut(s)	352, 500, 548
SfaNI	GCATC	1 cut(s)	617
SfcI	CTRYAG	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	674
SmlI	CTYRAG	2 cut(s)	287, 507
SmoI	CTYRAG	2 cut(s)	287, 507
Sse9I	AATT	2 cut(s)	363, 418
StyD4I	CCNGG	2 cut(s)	140, 243
TasI	AATT	2 cut(s)	363, 418
TfiI	GAWTC	2 cut(s)	14, 355
Tru1I	TTAA	1 cut(s)	551
Tru9I	TTAA	1 cut(s)	551
TseFI	GTSAC	2 cut(s)	449, 578
TseI	GCWGC	2 cut(s)	27, 528
Tsp45I	GTSAC	2 cut(s)	449, 578
TspDTI	ATGAA	5 cut(s)	17, 183, 226, 362, 674
TspGWI	ACGGA	1 cut(s)	96
Tth111I	GACNNNGTC	1 cut(s)	177
XapI	RAATTY	1 cut(s)	363
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
Zsp2I	ATGCAT	1 cut(s)	327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.