RLG00000007343

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0004229
Physical Location & Seq
Forward (+)
16016154 .. 16016697
544 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007343

Sequence Viewer

Length: 366 bp
ATGCAAACTCTGGAATCCCTTCTGTCGTATAATTCATTACGTACCATCATGAGGACCATACTTGTCATAGGCGCTATTGCCTTTGTGTTGATGGAGTCATCTCTGCAAGCCGATGCGAAACGGTTTGTTTTGAATGACCGTCACTTGGTTCAAGTTAAGAATGAGCCAACTCTTGCTAGTGGCGGTGCAAAAGATCAGTCTCAGTCTCAGCCCCGGACCACAAACAAGGGTAGCAGCAACAGCGATGCTAAATATGGTGATCTTGCCGACGATGATGCAAACGAGACTTATGGTAAGCATGGACATGGCTCTTCCGAAAGTGACTCTCACCGTTATTTTACCGACGATACATTCAGGCCCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

13.36

Weight (kDa)

5.9

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 183
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 2 cut(s) 51, 145
AgsI TTSAA 2 cut(s) 133, 152
Alw26I GTCTC 3 cut(s) 204, 210, 278
AoxI GGCC 1 cut(s) 356
ApeKI GCWGC 1 cut(s) 234
ArsI GACNNNNNNTTYG 2 cut(s) 182, 214
Asp700I GAANNNNTTC 1 cut(s) 18
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 3 cut(s) 54, 216, 357
AsuC2I CCSGG 1 cut(s) 214
AsuHPI GGTGA 2 cut(s) 269, 320
AvaII GGWCC 2 cut(s) 54, 216
BbvI GCAGC 1 cut(s) 246
BccI CCATC 2 cut(s) 53, 85
BcgI CGANNNNNNTGC 2 cut(s) 257, 291
BcnI CCSGG 1 cut(s) 214
BcoDI GTCTC 3 cut(s) 204, 210, 278
BfaI CTAG 1 cut(s) 177
BfoI RGCGCY 1 cut(s) 75
BisI GCNGC 1 cut(s) 235
BlsI GCNGC 1 cut(s) 236
Bme1390I CCNGG 1 cut(s) 214
Bme18I GGWCC 2 cut(s) 54, 216
BmgT120I GGNCC 3 cut(s) 54, 216, 357
BmiI GGNNCC 1 cut(s) 359
BmrFI CCNGG 1 cut(s) 214
BmsI GCATC 3 cut(s) 103, 235, 265
BpuMI CCSGG 1 cut(s) 214
BsaAI YACGTR 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 212
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 145
BseDI CCNNGG 1 cut(s) 212
BseLI CCNNNNNNNGG 2 cut(s) 51, 145
BseMII CTCAG 2 cut(s) 215, 221
BseXI GCAGC 1 cut(s) 246
BshFI GGCC 1 cut(s) 358
BsiSI CCGG 1 cut(s) 214
BslI CCNNNNNNNGG 2 cut(s) 51, 145
BsmAI GTCTC 3 cut(s) 204, 210, 278
BsnI GGCC 1 cut(s) 358
Bsp143I GATC 2 cut(s) 193, 259
BspACI CCGC 1 cut(s) 183
BspANI GGCC 1 cut(s) 358
BspCNI CTCAG 2 cut(s) 214, 220
BspHI TCATGA 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 359
BspQI GCTCTTC 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 212
BssMI GATC 2 cut(s) 193, 259
Bst4CI ACNGT 3 cut(s) 123, 140, 332
Bst6I CTCTTC 1 cut(s) 316
BstBAI YACGTR 1 cut(s) 41
BstC8I GCNNGC 1 cut(s) 108
BstDEI CTNAG 2 cut(s) 201, 207
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 1 cut(s) 74
BstKTI GATC 2 cut(s) 196, 262
BstMAI GTCTC 3 cut(s) 204, 210, 278
BstMBI GATC 2 cut(s) 193, 259
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 212
BstSNI TACGTA 1 cut(s) 41
BstV1I GCAGC 1 cut(s) 246
BsuRI GGCC 1 cut(s) 358
BtgZI GCGATG 1 cut(s) 258
Cac8I GCNNGC 1 cut(s) 108
CciI TCATGA 1 cut(s) 48
CfoI GCGC 1 cut(s) 74
Cfr13I GGNCC 3 cut(s) 54, 216, 357
Csp6I GTAC 1 cut(s) 42
CviAII CATG 3 cut(s) 49, 299, 305
CviJI RGCY 5 cut(s) 110, 166, 211, 309, 358
CviKI_1 RGCY 5 cut(s) 110, 166, 211, 309, 358
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 2 cut(s) 201, 207
DpnI GATC 2 cut(s) 195, 261
DpnII GATC 2 cut(s) 193, 259
Eam1104I CTCTTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 316
Eco105I TACGTA 1 cut(s) 41
Eco47I GGWCC 2 cut(s) 54, 216
EcoO109I RGGNCCY 1 cut(s) 357
FaeI CATG 3 cut(s) 52, 302, 308
FaiI YATR 8 cut(s) 30, 50, 59, 68, 255, 291, 300, 306
FatI CATG 3 cut(s) 48, 298, 304
Fnu4HI GCNGC 1 cut(s) 235
Fsp4HI GCNGC 1 cut(s) 235
FspBI CTAG 1 cut(s) 177
GlaI GCGC 1 cut(s) 73
GluI GCNGC 1 cut(s) 235
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 1 cut(s) 358
HapII CCGG 1 cut(s) 214
HhaI GCGC 1 cut(s) 74
Hin1II CATG 3 cut(s) 52, 302, 308
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HinfI GANTC 3 cut(s) 14, 95, 323
HpaII CCGG 1 cut(s) 214
HphI GGTGA 2 cut(s) 269, 320
Hpy188I TCNGA 1 cut(s) 316
Hpy188III TCNNGA 2 cut(s) 11, 49
Hpy99I CGWCG 2 cut(s) 272, 347
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 3 cut(s) 123, 140, 332
HpyCH4IV ACGT 1 cut(s) 40
HpyCH4V TGCA 4 cut(s) 4, 106, 188, 278
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
HpyF3I CTNAG 2 cut(s) 201, 207
HpySE526I ACGT 1 cut(s) 40
Hsp92II CATG 3 cut(s) 52, 302, 308
HspAI GCGC 1 cut(s) 72
Kzo9I GATC 2 cut(s) 193, 259
LguI GCTCTTC 1 cut(s) 316
LpnPI CCDG 2 cut(s) 227, 340
Lsp1109I GCAGC 1 cut(s) 246
LweI GCATC 3 cut(s) 103, 235, 265
MaeI CTAG 1 cut(s) 177
MaeII ACGT 1 cut(s) 40
MaeIII GTNAC 2 cut(s) 140, 320
MalI GATC 2 cut(s) 195, 261
MboI GATC 2 cut(s) 193, 259
MboII GAAGA 1 cut(s) 303
MluCI AATT 1 cut(s) 31
MlyI GAGTC 2 cut(s) 104, 317
MnlI CCTC 1 cut(s) 45
MroXI GAANNNNTTC 1 cut(s) 18
MseI TTAA 1 cut(s) 156
MslI CAYNNNNRTG 1 cut(s) 303
MspI CCGG 1 cut(s) 214
MspR9I CCNGG 1 cut(s) 214
MwoI GCNNNNNNNGC 1 cut(s) 240
NciI CCSGG 1 cut(s) 214
NdeII GATC 2 cut(s) 193, 259
NlaIII CATG 3 cut(s) 52, 302, 308
NlaIV GGNNCC 1 cut(s) 359
NmuCI GTSAC 2 cut(s) 140, 320
PagI TCATGA 1 cut(s) 48
PciSI GCTCTTC 1 cut(s) 316
PdmI GAANNNNTTC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 14
PkrI GCNGC 1 cut(s) 236
PleI GAGTC 2 cut(s) 103, 317
PpsI GAGTC 2 cut(s) 103, 317
Ppu21I YACGTR 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 359
PspPI GGNCC 3 cut(s) 54, 216, 357
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
RseI CAYNNNNRTG 1 cut(s) 303
SapI GCTCTTC 1 cut(s) 316
SaqAI TTAA 1 cut(s) 156
SatI GCNGC 1 cut(s) 235
Sau3AI GATC 2 cut(s) 193, 259
Sau96I GGNCC 3 cut(s) 54, 216, 357
SchI GAGTC 2 cut(s) 104, 317
ScrFI CCNGG 1 cut(s) 214
SetI ASST 1 cut(s) 43
SfaNI GCATC 3 cut(s) 103, 235, 265
SinI GGWCC 2 cut(s) 54, 216
SmiMI CAYNNNNRTG 1 cut(s) 303
SnaBI TACGTA 1 cut(s) 41
Sse9I AATT 1 cut(s) 31
SsiI CCGC 1 cut(s) 183
SspMI CTAG 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 212
TaaI ACNGT 3 cut(s) 123, 140, 332
TaiI ACGT 1 cut(s) 43
TasI AATT 1 cut(s) 31
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 1 cut(s) 156
Tru9I TTAA 1 cut(s) 156
TseFI GTSAC 2 cut(s) 140, 320
TseI GCWGC 1 cut(s) 234
Tsp45I GTSAC 2 cut(s) 140, 320
TspDTI ATGAA 1 cut(s) 24
VpaK11BI GGWCC 2 cut(s) 54, 216
XmnI GAANNNNTTC 1 cut(s) 18
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.