Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004229

Physical Location & Seq

Genomic Coordinates Reverse (-)

57861801 .. 57862706

Gene Structure 906 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG262500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAGAAGAAACCTGCACGATTCATTACGTACCATCATGAGGACCATACTTGTCATATGCGCTATTGGCTTTGTGTTGATGGTGTCATCTCTGCAAGCCGATGCTAAACGGTTTGTTTTGAATGACCGTCACTTGGTTCAAGTTAAGAATGAGCCAACTCTTGCTAGTGGCGGTGCAAAAGATCAGTCTCAGTCTCAGTCTCAGCCCCGGACCACAAACAAGGGTAGCAGCAACAGCGATGCTAAATATGATGATCTTGCCGACGATGATGCAAACGAGACTTATGGTAAGCATGGACATGGCTCTTCCGAAAGTGACTCTCACCGTTATTTTACCGACGATACATTCAGGCCCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

13.28

Weight (kDa)

6.57

Isoelectric Point (pI)

51.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004229)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20030 FvH4_4g20300
malus_domestica	MD16G1151900.v1.1
prunus_persica	Prupe.1G115400_v2.0.a1
rosa_laevigata	RLG00000007343 RLG00000008687 RLG00000013101 RLG00000036563
rosa_roxburghii	Rroxscaffold_1G00006070 Rroxscaffold_5G00352500 Rroxscaffold_5G00367720 Rroxscaffold_5G00367730
rosa_rugosa	Rorug04G0082500 Rorug04G0082600 Rorug04G0082700 Rorug04G0205600 Rorug04G0205700 Rorug05G0439500 Rorug05G0439600
rosa_samantha	Rh4AG147200 Rh4AG262400 Rh4AG262500 Rh4CG154000 Rh4CG280200 Rh4CG280500 Rh4DG141300 Rh4DG264300 Rh5AG496500 Rh5AG496600 Rh5BG517900 Rh5DG531400 Rh5DG531500
rosa_wichuraiana	Rw5G046060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	21
AciI	CCGC	1 cut(s)	171
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	2 cut(s)	39, 133
AgsI	TTSAA	2 cut(s)	121, 140
Alw26I	GTCTC	4 cut(s)	192, 198, 204, 272
AoxI	GGCC	1 cut(s)	350
ApeKI	GCWGC	1 cut(s)	228
ArsI	GACNNNNNNTTYG	2 cut(s)	170, 202
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	3 cut(s)	42, 210, 351
AsuC2I	CCSGG	1 cut(s)	208
AsuHPI	GGTGA	1 cut(s)	314
AvaII	GGWCC	2 cut(s)	42, 210
BbvI	GCAGC	1 cut(s)	240
BccI	CCATC	2 cut(s)	41, 73
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BcnI	CCSGG	1 cut(s)	208
BcoDI	GTCTC	4 cut(s)	192, 198, 204, 272
BfaI	CTAG	1 cut(s)	165
BfuAI	ACCTGC	1 cut(s)	21
BisI	GCNGC	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	230
Bme1390I	CCNGG	1 cut(s)	208
Bme18I	GGWCC	2 cut(s)	42, 210
BmgT120I	GGNCC	3 cut(s)	42, 210, 351
BmiI	GGNNCC	1 cut(s)	353
BmrFI	CCNGG	1 cut(s)	208
BmsI	GCATC	3 cut(s)	91, 229, 259
BpuMI	CCSGG	1 cut(s)	208
BsaAI	YACGTR	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	2 cut(s)	39, 133
BseDI	CCNNGG	1 cut(s)	206
BseLI	CCNNNNNNNGG	2 cut(s)	39, 133
BseMII	CTCAG	3 cut(s)	203, 209, 215
BseXI	GCAGC	1 cut(s)	240
BshFI	GGCC	1 cut(s)	352
BsiSI	CCGG	1 cut(s)	208
BslI	CCNNNNNNNGG	2 cut(s)	39, 133
BsmAI	GTCTC	4 cut(s)	192, 198, 204, 272
BsnI	GGCC	1 cut(s)	352
Bsp143I	GATC	2 cut(s)	181, 253
BspACI	CCGC	1 cut(s)	171
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	3 cut(s)	202, 208, 214
BspHI	TCATGA	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	353
BspMI	ACCTGC	1 cut(s)	21
BspQI	GCTCTTC	1 cut(s)	310
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	2 cut(s)	181, 253
Bst4CI	ACNGT	3 cut(s)	111, 128, 326
Bst6I	CTCTTC	1 cut(s)	310
BstBAI	YACGTR	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	3 cut(s)	189, 195, 201
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	2 cut(s)	184, 256
BstMAI	GTCTC	4 cut(s)	192, 198, 204, 272
BstMBI	GATC	2 cut(s)	181, 253
BstMWI	GCNNNNNNNGC	2 cut(s)	66, 234
BstSCI	CCNGG	1 cut(s)	206
BstSNI	TACGTA	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	240
BsuRI	GGCC	1 cut(s)	352
BtgZI	GCGATG	1 cut(s)	252
BveI	ACCTGC	1 cut(s)	21
Cac8I	GCNNGC	1 cut(s)	96
CciI	TCATGA	1 cut(s)	36
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	3 cut(s)	42, 210, 351
Csp6I	GTAC	1 cut(s)	30
CviAII	CATG	3 cut(s)	37, 293, 299
CviJI	RGCY	6 cut(s)	69, 98, 154, 205, 303, 352
CviKI_1	RGCY	6 cut(s)	69, 98, 154, 205, 303, 352
CviQI	GTAC	1 cut(s)	30
DdeI	CTNAG	3 cut(s)	189, 195, 201
DpnI	GATC	2 cut(s)	183, 255
DpnII	GATC	2 cut(s)	181, 253
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
Eco105I	TACGTA	1 cut(s)	29
Eco47I	GGWCC	2 cut(s)	42, 210
EcoO109I	RGGNCCY	1 cut(s)	351
FaeI	CATG	3 cut(s)	40, 296, 302
FaiI	YATR	8 cut(s)	38, 47, 56, 58, 249, 285, 294, 300
FatI	CATG	3 cut(s)	36, 292, 298
FauNDI	CATATG	1 cut(s)	56
Fnu4HI	GCNGC	1 cut(s)	229
Fsp4HI	GCNGC	1 cut(s)	229
FspBI	CTAG	1 cut(s)	165
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	1 cut(s)	229
HaeIII	GGCC	1 cut(s)	352
HapII	CCGG	1 cut(s)	208
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	3 cut(s)	40, 296, 302
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HinfI	GANTC	2 cut(s)	20, 317
HpaII	CCGG	1 cut(s)	208
HphI	GGTGA	1 cut(s)	314
Hpy188I	TCNGA	1 cut(s)	310
Hpy188III	TCNNGA	1 cut(s)	37
Hpy99I	CGWCG	2 cut(s)	266, 341
HpyCH4III	ACNGT	3 cut(s)	111, 128, 326
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	4 cut(s)	16, 94, 176, 272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	66, 234
HpyF3I	CTNAG	3 cut(s)	189, 195, 201
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	3 cut(s)	40, 296, 302
HspAI	GCGC	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	181, 253
LguI	GCTCTTC	1 cut(s)	310
LpnPI	CCDG	3 cut(s)	26, 221, 334
Lsp1109I	GCAGC	1 cut(s)	240
LweI	GCATC	3 cut(s)	91, 229, 259
MaeI	CTAG	1 cut(s)	165
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	2 cut(s)	128, 314
MalI	GATC	2 cut(s)	183, 255
MboI	GATC	2 cut(s)	181, 253
MboII	GAAGA	2 cut(s)	18, 297
MlyI	GAGTC	1 cut(s)	311
MnlI	CCTC	1 cut(s)	33
MseI	TTAA	2 cut(s)	144, 358
MslI	CAYNNNNRTG	1 cut(s)	297
MspI	CCGG	1 cut(s)	208
MspR9I	CCNGG	1 cut(s)	208
MwoI	GCNNNNNNNGC	2 cut(s)	66, 234
NciI	CCSGG	1 cut(s)	208
NdeI	CATATG	1 cut(s)	56
NdeII	GATC	2 cut(s)	181, 253
NlaIII	CATG	3 cut(s)	40, 296, 302
NlaIV	GGNNCC	1 cut(s)	353
NmuCI	GTSAC	2 cut(s)	128, 314
PagI	TCATGA	1 cut(s)	36
PciSI	GCTCTTC	1 cut(s)	310
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	230
PleI	GAGTC	1 cut(s)	311
PpsI	GAGTC	1 cut(s)	311
Ppu21I	YACGTR	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	353
PspPI	GGNCC	3 cut(s)	42, 210, 351
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
RseI	CAYNNNNRTG	1 cut(s)	297
SapI	GCTCTTC	1 cut(s)	310
SaqAI	TTAA	2 cut(s)	144, 358
SatI	GCNGC	1 cut(s)	229
Sau3AI	GATC	2 cut(s)	181, 253
Sau96I	GGNCC	3 cut(s)	42, 210, 351
SchI	GAGTC	1 cut(s)	311
ScrFI	CCNGG	1 cut(s)	208
SetI	ASST	2 cut(s)	15, 31
SfaNI	GCATC	3 cut(s)	91, 229, 259
SinI	GGWCC	2 cut(s)	42, 210
SmiMI	CAYNNNNRTG	1 cut(s)	297
SnaBI	TACGTA	1 cut(s)	29
SsiI	CCGC	1 cut(s)	171
SspMI	CTAG	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	206
TaaI	ACNGT	3 cut(s)	111, 128, 326
TaiI	ACGT	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	20
Tru1I	TTAA	2 cut(s)	144, 358
Tru9I	TTAA	2 cut(s)	144, 358
TseFI	GTSAC	2 cut(s)	128, 314
TseI	GCWGC	1 cut(s)	228
Tsp45I	GTSAC	2 cut(s)	128, 314
TspDTI	ATGAA	1 cut(s)	12
VpaK11BI	GGWCC	2 cut(s)	42, 210
XspI	CTAG	1 cut(s)	165

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.