Rh4AG262400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0004229
Physical Location & Seq
Reverse (-)
57845044 .. 57845917
874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG262400.1

Sequence Viewer

Length: 318 bp
ATGAGGACCATACTTACCATTTGCGTCGTTGGCTTGGTGTTGACGGTGGCATCTCTAGAAGCCGATGCTAAACGGTTTGTTTTGCATGACCGTCACTTGGTTCAAGTTAAAACTGATCCAAATATGGATCAAAACCCTGAGGTTCTTGCTAGTGGTGGTGCAAAAGATCAATCTCAGTCTCTGTCCCATACCGCAAGTAAGGGTAGCAGCAGCAGCGACGCGAAGCATGATGATCATGATGACGATATTCTTGGTAAGTACAGTAATGGCGCTACAACCCAATGCATGGCAGATAAAAAGAGGCCTCATTGTCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.37

Weight (kDa)

6.57

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 286
AccII CGCG 1 cut(s) 221
AciI CCGC 1 cut(s) 192
AclWI GGATC 2 cut(s) 110, 135
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 2 cut(s) 97, 286
AgsI TTSAA 1 cut(s) 104
Alw26I GTCTC 1 cut(s) 183
AlwI GGATC 2 cut(s) 110, 135
AlwNI CAGNNNCTG 1 cut(s) 181
AoxI GGCC 1 cut(s) 302
ApeKI GCWGC 3 cut(s) 207, 210, 213
AspLEI GCGC 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 6
AvaII GGWCC 1 cut(s) 6
AxyI CCTNAGG 1 cut(s) 138
BbvI GCAGC 3 cut(s) 219, 222, 225
BclI TGATCA 1 cut(s) 232
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 2 cut(s) 56, 150
BfoI RGCGCY 1 cut(s) 273
BisI GCNGC 3 cut(s) 208, 211, 214
BlsI GCNGC 3 cut(s) 209, 212, 215
Bme18I GGWCC 1 cut(s) 6
BmgT120I GGNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 55, 59
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 286
Bse21I CCTNAGG 1 cut(s) 138
BseLI CCNNNNNNNGG 2 cut(s) 97, 286
BseMII CTCAG 2 cut(s) 129, 188
BseXI GCAGC 3 cut(s) 219, 222, 225
Bsh1236I CGCG 1 cut(s) 221
BshFI GGCC 1 cut(s) 304
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 2 cut(s) 97, 286
BsmAI GTCTC 1 cut(s) 183
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 1 cut(s) 304
Bsp143I GATC 4 cut(s) 115, 127, 166, 232
BspACI CCGC 1 cut(s) 192
BspANI GGCC 1 cut(s) 304
BspCNI CTCAG 2 cut(s) 130, 187
BspFNI CGCG 1 cut(s) 221
BspHI TCATGA 1 cut(s) 235
BspPI GGATC 2 cut(s) 110, 135
BssMI GATC 4 cut(s) 115, 127, 166, 232
Bst4CI ACNGT 4 cut(s) 46, 75, 92, 263
BstDEI CTNAG 2 cut(s) 138, 174
BstFNI CGCG 1 cut(s) 221
BstH2I RGCGCY 1 cut(s) 273
BstHHI GCGC 1 cut(s) 272
BstKTI GATC 4 cut(s) 118, 130, 169, 235
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 4 cut(s) 115, 127, 166, 232
BstMWI GCNNNNNNNGC 2 cut(s) 30, 213
BstUI CGCG 1 cut(s) 221
BstV1I GCAGC 3 cut(s) 219, 222, 225
Bsu36I CCTNAGG 1 cut(s) 138
BsuRI GGCC 1 cut(s) 304
CaiI CAGNNNCTG 1 cut(s) 181
CciI TCATGA 1 cut(s) 235
CfoI GCGC 1 cut(s) 272
Cfr13I GGNCC 1 cut(s) 6
CseI GACGC 2 cut(s) 13, 227
Csp6I GTAC 1 cut(s) 259
CviAII CATG 4 cut(s) 86, 227, 236, 286
CviJI RGCY 3 cut(s) 33, 62, 304
CviKI_1 RGCY 3 cut(s) 33, 62, 304
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 2 cut(s) 138, 174
DpnI GATC 4 cut(s) 117, 129, 168, 234
DpnII GATC 4 cut(s) 115, 127, 166, 232
Eco147I AGGCCT 1 cut(s) 304
Eco47I GGWCC 1 cut(s) 6
Eco81I CCTNAGG 1 cut(s) 138
EcoT22I ATGCAT 1 cut(s) 287
FaeI CATG 4 cut(s) 89, 230, 239, 289
FaiI YATR 7 cut(s) 11, 87, 125, 189, 228, 237, 287
FaqI GGGAC 1 cut(s) 169
FatI CATG 4 cut(s) 85, 226, 235, 285
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 3 cut(s) 208, 211, 214
Fsp4HI GCNGC 3 cut(s) 208, 211, 214
FspBI CTAG 2 cut(s) 56, 150
GlaI GCGC 1 cut(s) 271
GluI GCNGC 3 cut(s) 208, 211, 214
HaeII RGCGCY 1 cut(s) 273
HaeIII GGCC 1 cut(s) 304
HgaI GACGC 2 cut(s) 13, 227
HhaI GCGC 1 cut(s) 272
Hin1II CATG 4 cut(s) 89, 230, 239, 289
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
Hpy166II GTNNAC 1 cut(s) 42
Hpy188III TCNNGA 2 cut(s) 56, 236
Hpy8I GTNNAC 1 cut(s) 42
Hpy99I CGWCG 2 cut(s) 29, 221
HpyCH4III ACNGT 4 cut(s) 46, 75, 92, 263
HpyCH4V TGCA 3 cut(s) 85, 161, 285
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 213
HpyF3I CTNAG 2 cut(s) 138, 174
Hsp92II CATG 4 cut(s) 89, 230, 239, 289
HspAI GCGC 1 cut(s) 270
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 4 cut(s) 115, 127, 166, 232
LpnPI CCDG 1 cut(s) 150
Lsp1109I GCAGC 3 cut(s) 219, 222, 225
LweI GCATC 2 cut(s) 55, 59
MaeI CTAG 2 cut(s) 56, 150
MaeIII GTNAC 1 cut(s) 92
MalI GATC 4 cut(s) 117, 129, 168, 234
MboI GATC 4 cut(s) 115, 127, 166, 232
MnlI CCTC 3 cut(s) 133, 294, 315
Mph1103I ATGCAT 1 cut(s) 287
MseI TTAA 2 cut(s) 108, 316
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 2 cut(s) 30, 213
NdeII GATC 4 cut(s) 115, 127, 166, 232
NlaIII CATG 4 cut(s) 89, 230, 239, 289
NmuCI GTSAC 1 cut(s) 92
NsiI ATGCAT 1 cut(s) 287
PagI TCATGA 1 cut(s) 235
PceI AGGCCT 1 cut(s) 304
PflMI CCANNNNNTGG 1 cut(s) 286
PkrI GCNGC 3 cut(s) 209, 212, 215
PspPI GGNCC 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 181
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SaqAI TTAA 2 cut(s) 108, 316
SatI GCNGC 3 cut(s) 208, 211, 214
Sau3AI GATC 4 cut(s) 115, 127, 166, 232
Sau96I GGNCC 1 cut(s) 6
SetI ASST 1 cut(s) 144
SfaNI GCATC 2 cut(s) 55, 59
SinI GGWCC 1 cut(s) 6
SseBI AGGCCT 1 cut(s) 304
SsiI CCGC 1 cut(s) 192
SspMI CTAG 2 cut(s) 56, 150
StuI AGGCCT 1 cut(s) 304
TaaI ACNGT 4 cut(s) 46, 75, 92, 263
TatI WGTACW 1 cut(s) 258
Tru1I TTAA 2 cut(s) 108, 316
Tru9I TTAA 2 cut(s) 108, 316
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 3 cut(s) 207, 210, 213
Tsp45I GTSAC 1 cut(s) 92
Van91I CCANNNNNTGG 1 cut(s) 286
VpaK11BI GGWCC 1 cut(s) 6
XbaI TCTAGA 1 cut(s) 55
XspI CTAG 2 cut(s) 56, 150
Zsp2I ATGCAT 1 cut(s) 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.