Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004229

Physical Location & Seq

Genomic Coordinates Reverse (-)

81937401 .. 81938102

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG531500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGTGCCAAAGCTTTCTGAATGTGATACCACCACTTTCATATATGGATGCTCTGTTCTAATGATAGTGCTCGGAGCTGCTCCTAACTATCTCAGTCTCCAATTGCCTATAAAATGCAACCTTTGGAATCCCTTCTGTCATATAGTTGGACATTTCTCGAAACTTGCAGATTCATTACGTACCAACATGAGGACCATACTTATCATATGCGTTATTGGCTTTGTGTTGATGGTGGCATCTCTGCAAGCAGATGCTAAACGGTTTGTTTTGAATGACCGTCACTTGGTTCAAGTTAAGAATGAGCCAACTCTGCGTCGAAGCGCCGAAGCTCTTGCTAGTGGCGGTGCAAAAGATCAATCTCAGTCTCAGCCCCGGACCACAAACAAGAGTAGCAGCAACAGCGATGCTAAGCATGATGATCATGCCGACGAAGATTCAAACGAGACTTATGGTAAGTCCGGACATGGCTCTTCCGAAAGTGACTCTCACCATTTTTTTTATCGGCGATACATACATGAGATCCCCCAGGATTCCTGGTGCTGGCAATGGACCCCATTAATTATCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

21.28

Weight (kDa)

6.78

Isoelectric Point (pI)

55.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004229)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20030 FvH4_4g20300
malus_domestica	MD16G1151900.v1.1
prunus_persica	Prupe.1G115400_v2.0.a1
rosa_laevigata	RLG00000007343 RLG00000008687 RLG00000013101 RLG00000036563
rosa_roxburghii	Rroxscaffold_1G00006070 Rroxscaffold_5G00352500 Rroxscaffold_5G00367720 Rroxscaffold_5G00367730
rosa_rugosa	Rorug04G0082500 Rorug04G0082600 Rorug04G0082700 Rorug04G0205600 Rorug04G0205700 Rorug05G0439500 Rorug05G0439600
rosa_samantha	Rh4AG147200 Rh4AG262400 Rh4AG262500 Rh4CG154000 Rh4CG280200 Rh4CG280500 Rh4DG141300 Rh4DG264300 Rh5AG496500 Rh5AG496600 Rh5BG517900 Rh5DG531400 Rh5DG531500
rosa_wichuraiana	Rw5G046060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccIII	TCCGGA	1 cut(s)	458
AciI	CCGC	1 cut(s)	342
AclWI	GGATC	1 cut(s)	514
AfaI	GTAC	1 cut(s)	181
AfiI	CCNNNNNNNGG	3 cut(s)	189, 283, 540
AgsI	TTSAA	3 cut(s)	271, 290, 438
AjnI	CCWGG	2 cut(s)	525, 533
AloI	GAACNNNNNNTCC	2 cut(s)	39, 71
AluBI	AGCT	3 cut(s)	13, 77, 329
AluI	AGCT	3 cut(s)	13, 77, 329
Alw21I	GWGCWC	1 cut(s)	72
Alw26I	GTCTC	3 cut(s)	101, 369, 437
AlwI	GGATC	1 cut(s)	514
Aor13HI	TCCGGA	1 cut(s)	458
ApeKI	GCWGC	2 cut(s)	77, 393
AseI	ATTAAT	1 cut(s)	557
Asp700I	GAANNNNTTC	1 cut(s)	131
AspLEI	GCGC	1 cut(s)	323
AspS9I	GGNCC	3 cut(s)	192, 375, 549
AsuC2I	CCSGG	1 cut(s)	373
AsuHPI	GGTGA	1 cut(s)	479
AvaII	GGWCC	3 cut(s)	192, 375, 549
BanI	GGYRCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	72
BbvI	GCAGC	2 cut(s)	64, 405
BccI	CCATC	1 cut(s)	223
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BciT130I	CCWGG	2 cut(s)	527, 535
BclI	TGATCA	1 cut(s)	418
BcnI	CCSGG	1 cut(s)	373
BcoDI	GTCTC	3 cut(s)	101, 369, 437
BfaI	CTAG	1 cut(s)	336
BfoI	RGCGCY	1 cut(s)	324
BisI	GCNGC	2 cut(s)	78, 394
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	2 cut(s)	79, 395
Bme1390I	CCNGG	3 cut(s)	373, 527, 535
Bme18I	GGWCC	3 cut(s)	192, 375, 549
BmgT120I	GGNCC	3 cut(s)	192, 375, 549
BmiI	GGNNCC	2 cut(s)	6, 551
BmrFI	CCNGG	3 cut(s)	373, 527, 535
BmsI	GCATC	4 cut(s)	38, 241, 245, 394
Bpu1102I	GCTNAGC	1 cut(s)	408
BpuMI	CCSGG	1 cut(s)	373
BsaAI	YACGTR	1 cut(s)	179
BsaJI	CCNNGG	2 cut(s)	371, 525
BsaWI	WCCGGW	1 cut(s)	458
Bsc4I	CCNNNNNNNGG	3 cut(s)	189, 283, 540
Bse3DI	GCAATG	1 cut(s)	551
BseAI	TCCGGA	1 cut(s)	458
BseBI	CCWGG	2 cut(s)	527, 535
BseDI	CCNNGG	2 cut(s)	371, 525
BseGI	GGATG	1 cut(s)	53
BseLI	CCNNNNNNNGG	3 cut(s)	189, 283, 540
BseMI	GCAATG	1 cut(s)	551
BseMII	CTCAG	3 cut(s)	106, 374, 380
BseXI	GCAGC	2 cut(s)	64, 405
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	373, 459
BslI	CCNNNNNNNGG	3 cut(s)	189, 283, 540
BsmAI	GTCTC	3 cut(s)	101, 369, 437
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp13I	TCCGGA	1 cut(s)	458
Bsp143I	GATC	3 cut(s)	352, 418, 519
Bsp1720I	GCTNAGC	1 cut(s)	408
BspACI	CCGC	1 cut(s)	342
BspCNI	CTCAG	3 cut(s)	105, 373, 379
BspEI	TCCGGA	1 cut(s)	458
BspLI	GGNNCC	2 cut(s)	6, 551
BspPI	GGATC	1 cut(s)	514
BspQI	GCTCTTC	1 cut(s)	475
BspT107I	GGYRCC	1 cut(s)	4
BsrDI	GCAATG	1 cut(s)	551
BssECI	CCNNGG	2 cut(s)	371, 525
BssMI	GATC	3 cut(s)	352, 418, 519
Bst2UI	CCWGG	2 cut(s)	527, 535
Bst4CI	ACNGT	2 cut(s)	261, 278
Bst6I	CTCTTC	1 cut(s)	475
BstBAI	YACGTR	1 cut(s)	179
BstC8I	GCNNGC	2 cut(s)	246, 542
BstDEI	CTNAG	4 cut(s)	92, 360, 366, 408
BstF5I	GGATG	1 cut(s)	53
BstH2I	RGCGCY	1 cut(s)	324
BstHHI	GCGC	1 cut(s)	323
BstKTI	GATC	3 cut(s)	355, 421, 522
BstMAI	GTCTC	3 cut(s)	101, 369, 437
BstMBI	GATC	3 cut(s)	352, 418, 519
BstMWI	GCNNNNNNNGC	3 cut(s)	216, 310, 399
BstNI	CCWGG	2 cut(s)	527, 535
BstSCI	CCNGG	3 cut(s)	371, 525, 533
BstSNI	TACGTA	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	64, 405
BstX2I	RGATCY	1 cut(s)	519
BstYI	RGATCY	1 cut(s)	519
BtgZI	GCGATG	1 cut(s)	417
BtsCI	GGATG	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	565
Cac8I	GCNNGC	2 cut(s)	246, 542
CfoI	GCGC	1 cut(s)	323
Cfr13I	GGNCC	3 cut(s)	192, 375, 549
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	180
CviAII	CATG	5 cut(s)	187, 413, 422, 464, 515
CviJI	RGCY	7 cut(s)	13, 77, 219, 304, 329, 370, 468
CviKI_1	RGCY	7 cut(s)	13, 77, 219, 304, 329, 370, 468
CviQI	GTAC	1 cut(s)	180
DdeI	CTNAG	4 cut(s)	92, 360, 366, 408
DpnI	GATC	3 cut(s)	354, 420, 521
DpnII	GATC	3 cut(s)	352, 418, 519
Eam1104I	CTCTTC	1 cut(s)	475
EarI	CTCTTC	1 cut(s)	475
Eco105I	TACGTA	1 cut(s)	179
Eco47I	GGWCC	3 cut(s)	192, 375, 549
EcoRII	CCWGG	2 cut(s)	525, 533
FaeI	CATG	5 cut(s)	190, 416, 425, 467, 518
FatI	CATG	5 cut(s)	186, 412, 421, 463, 514
FauNDI	CATATG	1 cut(s)	206
FbaI	TGATCA	1 cut(s)	418
Fnu4HI	GCNGC	2 cut(s)	78, 394
FokI	GGATG	1 cut(s)	60
Fsp4HI	GCNGC	2 cut(s)	78, 394
FspBI	CTAG	1 cut(s)	336
GlaI	GCGC	1 cut(s)	322
GluI	GCNGC	2 cut(s)	78, 394
HaeII	RGCGCY	1 cut(s)	324
HapII	CCGG	2 cut(s)	373, 459
HgaI	GACGC	1 cut(s)	302
HhaI	GCGC	1 cut(s)	323
Hin1II	CATG	5 cut(s)	190, 416, 425, 467, 518
Hin6I	GCGC	1 cut(s)	321
HinP1I	GCGC	1 cut(s)	321
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	5 cut(s)	127, 170, 434, 482, 530
HpaII	CCGG	2 cut(s)	373, 459
HphI	GGTGA	1 cut(s)	479
Hpy188I	TCNGA	3 cut(s)	19, 74, 475
Hpy188III	TCNNGA	2 cut(s)	157, 459
Hpy99I	CGWCG	2 cut(s)	318, 431
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	2 cut(s)	261, 278
HpyCH4IV	ACGT	1 cut(s)	178
HpyCH4V	TGCA	4 cut(s)	117, 167, 244, 347
HpyF10VI	GCNNNNNNNGC	3 cut(s)	216, 310, 399
HpyF3I	CTNAG	4 cut(s)	92, 360, 366, 408
HpySE526I	ACGT	1 cut(s)	178
Hsp92II	CATG	5 cut(s)	190, 416, 425, 467, 518
HspAI	GCGC	1 cut(s)	321
Kpn2I	TCCGGA	1 cut(s)	458
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	3 cut(s)	352, 418, 519
LguI	GCTCTTC	1 cut(s)	475
LmnI	GCTCC	2 cut(s)	74, 85
LpnPI	CCDG	7 cut(s)	386, 472, 512, 520, 526, 539, 547
Lsp1109I	GCAGC	2 cut(s)	64, 405
LweI	GCATC	4 cut(s)	38, 241, 245, 394
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	1 cut(s)	178
MaeIII	GTNAC	2 cut(s)	278, 479
MalI	GATC	3 cut(s)	354, 420, 521
MboI	GATC	3 cut(s)	352, 418, 519
MboII	GAAGA	2 cut(s)	443, 462
MfeI	CAATTG	1 cut(s)	101
MflI	RGATCY	1 cut(s)	519
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	2 cut(s)	101, 558
MlyI	GAGTC	1 cut(s)	476
MmeI	TCCRAC	1 cut(s)	127
MnlI	CCTC	1 cut(s)	183
MroI	TCCGGA	1 cut(s)	458
MroXI	GAANNNNTTC	1 cut(s)	131
MseI	TTAA	2 cut(s)	294, 557
MspI	CCGG	2 cut(s)	373, 459
MspR9I	CCNGG	3 cut(s)	373, 527, 535
MunI	CAATTG	1 cut(s)	101
MvaI	CCWGG	2 cut(s)	527, 535
MwoI	GCNNNNNNNGC	3 cut(s)	216, 310, 399
NciI	CCSGG	1 cut(s)	373
NdeI	CATATG	1 cut(s)	206
NdeII	GATC	3 cut(s)	352, 418, 519
NlaIII	CATG	5 cut(s)	190, 416, 425, 467, 518
NlaIV	GGNNCC	2 cut(s)	6, 551
NmuCI	GTSAC	2 cut(s)	278, 479
PciSI	GCTCTTC	1 cut(s)	475
PdmI	GAANNNNTTC	1 cut(s)	131
PfeI	GAWTC	4 cut(s)	127, 170, 434, 530
PkrI	GCNGC	2 cut(s)	79, 395
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
Ppu21I	YACGTR	1 cut(s)	179
PshBI	ATTAAT	1 cut(s)	557
Psp6I	CCWGG	2 cut(s)	525, 533
PspGI	CCWGG	2 cut(s)	525, 533
PspN4I	GGNNCC	2 cut(s)	6, 551
PspPI	GGNCC	3 cut(s)	192, 375, 549
PsuI	RGATCY	1 cut(s)	519
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	475
SaqAI	TTAA	2 cut(s)	294, 557
SatI	GCNGC	2 cut(s)	78, 394
Sau3AI	GATC	3 cut(s)	352, 418, 519
Sau96I	GGNCC	3 cut(s)	192, 375, 549
SchI	GAGTC	1 cut(s)	476
ScrFI	CCNGG	3 cut(s)	373, 527, 535
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	5 cut(s)	15, 79, 123, 181, 331
SfaNI	GCATC	4 cut(s)	38, 241, 245, 394
SinI	GGWCC	3 cut(s)	192, 375, 549
SnaBI	TACGTA	1 cut(s)	179
Sse9I	AATT	2 cut(s)	101, 558
SsiI	CCGC	1 cut(s)	342
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	3 cut(s)	371, 525, 533
TaaI	ACNGT	2 cut(s)	261, 278
TaiI	ACGT	1 cut(s)	181
TaqI	TCGA	2 cut(s)	158, 316
TasI	AATT	2 cut(s)	101, 558
TfiI	GAWTC	4 cut(s)	127, 170, 434, 530
Tru1I	TTAA	2 cut(s)	294, 557
Tru9I	TTAA	2 cut(s)	294, 557
TseFI	GTSAC	2 cut(s)	278, 479
TseI	GCWGC	2 cut(s)	77, 393
Tsp45I	GTSAC	2 cut(s)	278, 479
TspDTI	ATGAA	2 cut(s)	28, 162
VpaK11BI	GGWCC	3 cut(s)	192, 375, 549
VspI	ATTAAT	1 cut(s)	557
XmnI	GAANNNNTTC	1 cut(s)	131
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.