Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004229

Physical Location & Seq

Genomic Coordinates Reverse (-)

26221416 .. 26224294

Gene Structure 2879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013101

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGAGGACCATACTTGTCATATGCGTTATTGGCTTTGTGTTGATGGTGGCATCTCTGCAAGCCGATGCTAAACGGTTTGTTTTGAATGACCGCCGCTTGGTTCAAGTTAAGAATGAGCCAACTCTGGGTCGAAACGCCGAGGCTCTTGCTAGTGGTGGTGCAAAAGATCAGTCTCAGTCTCAGCCCCTGACAACAGACGAGGGTAGCAGCAACAGCGATGCTAAGCATGATGATGATGCCGACGATGATGCAAACGAGACTTACGCACGAGCAGCAGCGACTGGGACGATGGGCTTTGACGGTGGGCTCGAGGTTGGTGAAGATTACGCCTGGGACATGCTTGCCGGCACCGATCTCGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

12.91

Weight (kDa)

4.21

Isoelectric Point (pI)

40.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004229)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20030 FvH4_4g20300
malus_domestica	MD16G1151900.v1.1
prunus_persica	Prupe.1G115400_v2.0.a1
rosa_laevigata	RLG00000007343 RLG00000008687 RLG00000013101 RLG00000036563
rosa_roxburghii	Rroxscaffold_1G00006070 Rroxscaffold_5G00352500 Rroxscaffold_5G00367720 Rroxscaffold_5G00367730
rosa_rugosa	Rorug04G0082500 Rorug04G0082600 Rorug04G0082700 Rorug04G0205600 Rorug04G0205700 Rorug05G0439500 Rorug05G0439600
rosa_samantha	Rh4AG147200 Rh4AG262400 Rh4AG262500 Rh4CG154000 Rh4CG280200 Rh4CG280500 Rh4DG141300 Rh4DG264300 Rh5AG496500 Rh5AG496600 Rh5BG517900 Rh5DG531400 Rh5DG531500
rosa_wichuraiana	Rw5G046060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	347
AciI	CCGC	2 cut(s)	91, 94
AfiI	CCNNNNNNNGG	2 cut(s)	97, 125
AgsI	TTSAA	2 cut(s)	85, 104
AjnI	CCWGG	1 cut(s)	329
Alw26I	GTCTC	3 cut(s)	177, 183, 251
AlwNI	CAGNNNCTG	2 cut(s)	187, 281
Ama87I	CYCGRG	1 cut(s)	308
ApeKI	GCWGC	3 cut(s)	207, 272, 275
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AspS9I	GGNCC	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	329
AvaI	CYCGRG	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	6
BanI	GGYRCC	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	309
BauI	CACGAG	1 cut(s)	267
BbvI	GCAGC	3 cut(s)	219, 284, 287
BccI	CCATC	2 cut(s)	37, 283
BcgI	CGANNNNNNTGC	5 cut(s)	128, 162, 230, 264, 337
BciT130I	CCWGG	1 cut(s)	331
BcoDI	GTCTC	3 cut(s)	177, 183, 251
BfaI	CTAG	1 cut(s)	150
BisI	GCNGC	4 cut(s)	94, 208, 273, 276
BlpI	GCTNAGC	1 cut(s)	222
BlsI	GCNGC	4 cut(s)	95, 209, 274, 277
Bme1390I	CCNGG	1 cut(s)	331
Bme18I	GGWCC	1 cut(s)	6
BmeT110I	CYCGRG	1 cut(s)	308
BmgT120I	GGNCC	1 cut(s)	6
BmiI	GGNNCC	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	331
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	5 cut(s)	55, 59, 208, 226, 238
BmuI	ACTGGG	1 cut(s)	291
Bpu1102I	GCTNAGC	1 cut(s)	222
BsaJI	CCNNGG	2 cut(s)	138, 330
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 125
Bse118I	RCCGGY	1 cut(s)	344
Bse1I	ACTGG	1 cut(s)	286
BseBI	CCWGG	1 cut(s)	331
BseDI	CCNNGG	2 cut(s)	138, 330
BseLI	CCNNNNNNNGG	2 cut(s)	97, 125
BseMII	CTCAG	2 cut(s)	188, 194
BseNI	ACTGG	1 cut(s)	286
BseXI	GCAGC	3 cut(s)	219, 284, 287
BshNI	GGYRCC	1 cut(s)	347
BsiHKCI	CYCGRG	1 cut(s)	308
BsiSI	CCGG	1 cut(s)	345
BslFI	GGGAC	2 cut(s)	298, 347
BslI	CCNNNNNNNGG	2 cut(s)	97, 125
BsmAI	GTCTC	3 cut(s)	177, 183, 251
BsmFI	GGGAC	2 cut(s)	298, 347
BsoBI	CYCGRG	1 cut(s)	308
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp143I	GATC	2 cut(s)	166, 352
Bsp1720I	GCTNAGC	1 cut(s)	222
BspACI	CCGC	2 cut(s)	91, 94
BspCNI	CTCAG	2 cut(s)	187, 193
BspLI	GGNNCC	1 cut(s)	349
BspT107I	GGYRCC	1 cut(s)	347
BsrFI	RCCGGY	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	286
BssAI	RCCGGY	1 cut(s)	344
BssECI	CCNNGG	2 cut(s)	138, 330
BssMI	GATC	2 cut(s)	166, 352
BssSI	CACGAG	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	331
Bst4CI	ACNGT	2 cut(s)	75, 302
BstC8I	GCNNGC	3 cut(s)	60, 342, 346
BstDEI	CTNAG	3 cut(s)	174, 180, 222
BstKTI	GATC	2 cut(s)	169, 355
BstMAI	GTCTC	3 cut(s)	177, 183, 251
BstMBI	GATC	2 cut(s)	166, 352
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 213, 272
BstNI	CCWGG	1 cut(s)	331
BstNSI	RCATGY	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	329
BstV1I	GCAGC	3 cut(s)	219, 284, 287
BtgZI	GCGATG	1 cut(s)	231
Cac8I	GCNNGC	3 cut(s)	60, 342, 346
CaiI	CAGNNNCTG	2 cut(s)	187, 281
Cfr10I	RCCGGY	1 cut(s)	344
Cfr13I	GGNCC	1 cut(s)	6
CviAII	CATG	2 cut(s)	227, 337
CviJI	RGCY	7 cut(s)	33, 62, 118, 143, 184, 294, 307
CviKI_1	RGCY	7 cut(s)	33, 62, 118, 143, 184, 294, 307
DdeI	CTNAG	3 cut(s)	174, 180, 222
DpnI	GATC	2 cut(s)	168, 354
DpnII	GATC	2 cut(s)	166, 352
Eco24I	GRGCYC	1 cut(s)	309
Eco47I	GGWCC	1 cut(s)	6
Eco88I	CYCGRG	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	329
EcoT38I	GRGCYC	1 cut(s)	309
FaeI	CATG	2 cut(s)	230, 340
FaiI	YATR	5 cut(s)	11, 20, 22, 228, 338
FaqI	GGGAC	2 cut(s)	298, 347
FatI	CATG	2 cut(s)	226, 336
FauNDI	CATATG	1 cut(s)	20
Fnu4HI	GCNGC	4 cut(s)	94, 208, 273, 276
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	4 cut(s)	94, 208, 273, 276
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	4 cut(s)	94, 208, 273, 276
HapII	CCGG	1 cut(s)	345
Hin1II	CATG	2 cut(s)	230, 340
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	1 cut(s)	329
Hpy188III	TCNNGA	1 cut(s)	356
Hpy99I	CGWCG	1 cut(s)	245
HpyCH4III	ACNGT	2 cut(s)	75, 302
HpyCH4V	TGCA	3 cut(s)	58, 161, 251
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 213, 272
HpyF3I	CTNAG	3 cut(s)	174, 180, 222
Hsp92II	CATG	2 cut(s)	230, 340
KroI	GCCGGC	1 cut(s)	344
KroNI	GCCGGC	1 cut(s)	346
Kzo9I	GATC	2 cut(s)	166, 352
LpnPI	CCDG	6 cut(s)	110, 200, 267, 316, 343, 358
Lsp1109I	GCAGC	3 cut(s)	219, 284, 287
LweI	GCATC	5 cut(s)	55, 59, 208, 226, 238
MaeI	CTAG	1 cut(s)	150
MalI	GATC	2 cut(s)	168, 354
MboI	GATC	2 cut(s)	166, 352
MboII	GAAGA	1 cut(s)	332
MhlI	GDGCHC	1 cut(s)	309
MnlI	CCTC	3 cut(s)	133, 193, 304
MroNI	GCCGGC	1 cut(s)	344
MseI	TTAA	1 cut(s)	108
MslI	CAYNNNNRTG	1 cut(s)	231
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	1 cut(s)	331
MvaI	CCWGG	1 cut(s)	331
MwoI	GCNNNNNNNGC	3 cut(s)	30, 213, 272
NaeI	GCCGGC	1 cut(s)	346
NdeI	CATATG	1 cut(s)	20
NdeII	GATC	2 cut(s)	166, 352
NgoMIV	GCCGGC	1 cut(s)	344
NlaIII	CATG	2 cut(s)	230, 340
NlaIV	GGNNCC	1 cut(s)	349
NmeAIII	GCCGAG	1 cut(s)	163
NspI	RCATGY	1 cut(s)	340
PaeR7I	CTCGAG	1 cut(s)	308
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PdiI	GCCGGC	1 cut(s)	346
PkrI	GCNGC	4 cut(s)	95, 209, 274, 277
Psp6I	CCWGG	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	329
PspN4I	GGNNCC	1 cut(s)	349
PspPI	GGNCC	1 cut(s)	6
PspXI	VCTCGAGB	1 cut(s)	308
PstNI	CAGNNNCTG	2 cut(s)	187, 281
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	4 cut(s)	94, 208, 273, 276
Sau3AI	GATC	2 cut(s)	166, 352
Sau96I	GGNCC	1 cut(s)	6
ScrFI	CCNGG	1 cut(s)	331
SduI	GDGCHC	1 cut(s)	309
SetI	ASST	1 cut(s)	315
SfaNI	GCATC	5 cut(s)	55, 59, 208, 226, 238
Sfr274I	CTCGAG	1 cut(s)	308
SinI	GGWCC	1 cut(s)	6
SlaI	CTCGAG	1 cut(s)	308
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SsiI	CCGC	2 cut(s)	91, 94
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	1 cut(s)	329
TaaI	ACNGT	2 cut(s)	75, 302
TaqI	TCGA	3 cut(s)	130, 309, 357
TauI	GCSGC	1 cut(s)	96
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TseI	GCWGC	3 cut(s)	207, 272, 275
VpaK11BI	GGWCC	1 cut(s)	6
XceI	RCATGY	1 cut(s)	340
XhoI	CTCGAG	1 cut(s)	308
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.