Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004229

Physical Location & Seq

Genomic Coordinates Reverse (-)

81928434 .. 81929301

Gene Structure 868 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG531400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAGGACCATACTTACCATATGCGTCGTTGGCTTTGTGTTTATGGTGGCATCTCTACAAGCCGATGCTAAACGGTTTGTTTTGCATGACCGTCACTTGGCTCAAGTTACAAATGATCCAAATATGGATCAAGCCCCTGAGGTTCTTGCTAGTGGTGATGCAAAAGATCATCAGTCTCAGTATCAGTCCCAGACCACAAGCAAGGGTAGCAGCAACAGCGATGCTAAGCATGATGATCATGCCGACGATGATGTGAACGATAGTTATGGTAAGTCCGGACATGGCTCTTCCGAAAGTGACGCTCATAGTGGATATGGACTTGCATGCAATGGAGATCGAAAGAGGCCTCATTGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

12.87

Weight (kDa)

5.63

Isoelectric Point (pI)

34.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004229)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20030 FvH4_4g20300
malus_domestica	MD16G1151900.v1.1
prunus_persica	Prupe.1G115400_v2.0.a1
rosa_laevigata	RLG00000007343 RLG00000008687 RLG00000013101 RLG00000036563
rosa_roxburghii	Rroxscaffold_1G00006070 Rroxscaffold_5G00352500 Rroxscaffold_5G00367720 Rroxscaffold_5G00367730
rosa_rugosa	Rorug04G0082500 Rorug04G0082600 Rorug04G0082700 Rorug04G0205600 Rorug04G0205700 Rorug05G0439500 Rorug05G0439600
rosa_samantha	Rh4AG147200 Rh4AG262400 Rh4AG262500 Rh4CG154000 Rh4CG280200 Rh4CG280500 Rh4DG141300 Rh4DG264300 Rh5AG496500 Rh5AG496600 Rh5BG517900 Rh5DG531400 Rh5DG531500
rosa_wichuraiana	Rw5G046060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	275
AclWI	GGATC	2 cut(s)	110, 135
AfiI	CCNNNNNNNGG	1 cut(s)	97
Alw26I	GTCTC	1 cut(s)	180
AlwI	GGATC	2 cut(s)	110, 135
Aor13HI	TCCGGA	1 cut(s)	275
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	1 cut(s)	210
AspS9I	GGNCC	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	6
AxyI	CCTNAGG	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	222
BclI	TGATCA	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	1 cut(s)	150
BisI	GCNGC	1 cut(s)	211
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	212
Bme18I	GGWCC	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	6
BmsI	GCATC	4 cut(s)	55, 59, 148, 211
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	87
BsaWI	WCCGGW	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse21I	CCTNAGG	1 cut(s)	138
Bse3DI	GCAATG	1 cut(s)	334
BseAI	TCCGGA	1 cut(s)	275
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	2 cut(s)	129, 191
BseXI	GCAGC	1 cut(s)	222
BshFI	GGCC	1 cut(s)	346
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	346
Bsp13I	TCCGGA	1 cut(s)	275
Bsp143I	GATC	5 cut(s)	115, 127, 166, 235, 334
Bsp1720I	GCTNAGC	1 cut(s)	225
BspANI	GGCC	1 cut(s)	346
BspCNI	CTCAG	2 cut(s)	130, 190
BspEI	TCCGGA	1 cut(s)	275
BspPI	GGATC	2 cut(s)	110, 135
BspQI	GCTCTTC	1 cut(s)	292
BsrDI	GCAATG	1 cut(s)	334
BssMI	GATC	5 cut(s)	115, 127, 166, 235, 334
Bst4CI	ACNGT	2 cut(s)	75, 92
Bst6I	CTCTTC	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	3 cut(s)	138, 177, 225
BstKTI	GATC	5 cut(s)	118, 130, 169, 238, 337
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	5 cut(s)	115, 127, 166, 235, 334
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 207, 216
BstNSI	RCATGY	1 cut(s)	327
BstV1I	GCAGC	1 cut(s)	222
Bsu36I	CCTNAGG	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	346
BtgZI	GCGATG	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	6
CseI	GACGC	2 cut(s)	13, 308
CviAII	CATG	5 cut(s)	86, 230, 239, 281, 324
CviJI	RGCY	6 cut(s)	33, 62, 101, 134, 285, 346
CviKI_1	RGCY	6 cut(s)	33, 62, 101, 134, 285, 346
DdeI	CTNAG	3 cut(s)	138, 177, 225
DpnI	GATC	5 cut(s)	117, 129, 168, 237, 336
DpnII	GATC	5 cut(s)	115, 127, 166, 235, 334
Eam1104I	CTCTTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	292
Eco147I	AGGCCT	1 cut(s)	346
Eco47I	GGWCC	1 cut(s)	6
Eco81I	CCTNAGG	1 cut(s)	138
FaeI	CATG	5 cut(s)	89, 233, 242, 284, 327
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	5 cut(s)	85, 229, 238, 280, 323
FauNDI	CATATG	1 cut(s)	20
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	211
Fsp4HI	GCNGC	1 cut(s)	211
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	1 cut(s)	211
HaeIII	GGCC	1 cut(s)	346
HapII	CCGG	1 cut(s)	276
HgaI	GACGC	2 cut(s)	13, 308
Hin1II	CATG	5 cut(s)	89, 233, 242, 284, 327
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	1 cut(s)	276
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	2 cut(s)	29, 248
HpyCH4III	ACNGT	2 cut(s)	75, 92
HpyCH4V	TGCA	4 cut(s)	85, 161, 323, 327
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 207, 216
HpyF3I	CTNAG	3 cut(s)	138, 177, 225
Hsp92II	CATG	5 cut(s)	89, 233, 242, 284, 327
Kpn2I	TCCGGA	1 cut(s)	275
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	5 cut(s)	115, 127, 166, 235, 334
LguI	GCTCTTC	1 cut(s)	292
LpnPI	CCDG	3 cut(s)	150, 203, 289
Lsp1109I	GCAGC	1 cut(s)	222
LweI	GCATC	4 cut(s)	55, 59, 148, 211
MaeI	CTAG	1 cut(s)	150
MaeIII	GTNAC	3 cut(s)	92, 106, 296
MalI	GATC	5 cut(s)	117, 129, 168, 237, 336
MboI	GATC	5 cut(s)	115, 127, 166, 235, 334
MboII	GAAGA	1 cut(s)	279
MluCI	AATT	1 cut(s)	355
MnlI	CCTC	3 cut(s)	133, 336, 357
MroI	TCCGGA	1 cut(s)	275
MseI	TTAA	1 cut(s)	358
MspI	CCGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	3 cut(s)	30, 207, 216
NdeI	CATATG	1 cut(s)	20
NdeII	GATC	5 cut(s)	115, 127, 166, 235, 334
NlaIII	CATG	5 cut(s)	89, 233, 242, 284, 327
NmuCI	GTSAC	2 cut(s)	92, 296
NspI	RCATGY	1 cut(s)	327
PaeI	GCATGC	1 cut(s)	327
PceI	AGGCCT	1 cut(s)	346
PciSI	GCTCTTC	1 cut(s)	292
PkrI	GCNGC	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	6
SapI	GCTCTTC	1 cut(s)	292
SaqAI	TTAA	1 cut(s)	358
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	5 cut(s)	115, 127, 166, 235, 334
Sau96I	GGNCC	1 cut(s)	6
SetI	ASST	1 cut(s)	144
SfaNI	GCATC	4 cut(s)	55, 59, 148, 211
SinI	GGWCC	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	102
SmoI	CTYRAG	1 cut(s)	102
SphI	GCATGC	1 cut(s)	327
Sse9I	AATT	1 cut(s)	355
SseBI	AGGCCT	1 cut(s)	346
SspMI	CTAG	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	346
TaaI	ACNGT	2 cut(s)	75, 92
TaqI	TCGA	1 cut(s)	337
TasI	AATT	1 cut(s)	355
Tru1I	TTAA	1 cut(s)	358
Tru9I	TTAA	1 cut(s)	358
TseFI	GTSAC	2 cut(s)	92, 296
TseI	GCWGC	1 cut(s)	210
Tsp45I	GTSAC	2 cut(s)	92, 296
VpaK11BI	GGWCC	1 cut(s)	6
XceI	RCATGY	1 cut(s)	327
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.