Rh4AG147200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0004229
Physical Location & Seq
Forward (+)
37144795 .. 37145596
802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG147200.1

Sequence Viewer

Length: 363 bp
ATGAGGACCATACTTACCAATTGCGTCGTTGGCTTGCTGTTGACGGTGGCATCTCTAGAAGCCGATGCTAAACGGTTTGTTTTGCATGACCGTCACTTGGTTCAAGTTAAAACTGATCCAAATATGGATCAAAACCCTGAGGTTCTTGCTAGTGGTGGTGCAAAAGATCAATTTCAGTTTCAGTCCCAGACCACAAGTAAGGGTAGCAGCAACAGCGATGCAAAGCATGATGATCATGACGAAGATGACGTGAACGAGATTCATGCTACAACCCAATGCATGCCAGATAAACCTCAAGGGAGGCCGCATTGTAAAACTACTGAGTCTAAAAGCCTTCATGAGCCTAAAAGCCTTCATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.26

Weight (kDa)

5.84

Isoelectric Point (pI)

32.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 305
AclWI GGATC 2 cut(s) 110, 135
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 1 cut(s) 104
AjiI CACGTC 1 cut(s) 250
AlwI GGATC 2 cut(s) 110, 135
AoxI GGCC 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 6
AvaII GGWCC 1 cut(s) 6
AxyI CCTNAGG 1 cut(s) 138
BbvI GCAGC 1 cut(s) 219
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BclI TGATCA 1 cut(s) 232
BfaI CTAG 2 cut(s) 56, 150
BisI GCNGC 2 cut(s) 208, 305
BlsI GCNGC 2 cut(s) 209, 306
Bme18I GGWCC 1 cut(s) 6
BmgBI CACGTC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 6
BmsI GCATC 3 cut(s) 55, 59, 208
BpuEI CTTGAG 1 cut(s) 279
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse21I CCTNAGG 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMII CTCAG 2 cut(s) 129, 312
BseXI GCAGC 1 cut(s) 219
BshFI GGCC 1 cut(s) 304
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 97
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 1 cut(s) 304
Bsp143I GATC 4 cut(s) 115, 127, 166, 232
BspACI CCGC 1 cut(s) 305
BspANI GGCC 1 cut(s) 304
BspCNI CTCAG 2 cut(s) 130, 313
BspHI TCATGA 2 cut(s) 235, 337
BspPI GGATC 2 cut(s) 110, 135
BssMI GATC 4 cut(s) 115, 127, 166, 232
Bst4CI ACNGT 3 cut(s) 46, 75, 92
BstC8I GCNNGC 2 cut(s) 35, 281
BstDEI CTNAG 2 cut(s) 138, 321
BstKTI GATC 4 cut(s) 118, 130, 169, 235
BstMBI GATC 4 cut(s) 115, 127, 166, 232
BstMWI GCNNNNNNNGC 2 cut(s) 30, 213
BstNSI RCATGY 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 219
Bsu36I CCTNAGG 1 cut(s) 138
BsuRI GGCC 1 cut(s) 304
BtgZI GCGATG 1 cut(s) 231
BtrI CACGTC 1 cut(s) 250
Cac8I GCNNGC 2 cut(s) 35, 281
CciI TCATGA 2 cut(s) 235, 337
Cfr13I GGNCC 1 cut(s) 6
CseI GACGC 1 cut(s) 13
CviAII CATG 8 cut(s) 86, 227, 236, 263, 280, 338, 356, 360
CviJI RGCY 6 cut(s) 33, 62, 304, 333, 343, 351
CviKI_1 RGCY 6 cut(s) 33, 62, 304, 333, 343, 351
DdeI CTNAG 2 cut(s) 138, 321
DpnI GATC 4 cut(s) 117, 129, 168, 234
DpnII GATC 4 cut(s) 115, 127, 166, 232
Eco47I GGWCC 1 cut(s) 6
Eco81I CCTNAGG 1 cut(s) 138
EcoT22I ATGCAT 2 cut(s) 281, 361
FaeI CATG 8 cut(s) 89, 230, 239, 266, 283, 341, 359, 363
FaqI GGGAC 1 cut(s) 169
FatI CATG 8 cut(s) 85, 226, 235, 262, 279, 337, 355, 359
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 2 cut(s) 208, 305
Fsp4HI GCNGC 2 cut(s) 208, 305
FspBI CTAG 2 cut(s) 56, 150
GluI GCNGC 2 cut(s) 208, 305
HaeIII GGCC 1 cut(s) 304
HgaI GACGC 1 cut(s) 13
Hin1II CATG 8 cut(s) 89, 230, 239, 266, 283, 341, 359, 363
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 2 cut(s) 259, 323
Hpy166II GTNNAC 2 cut(s) 42, 253
Hpy188III TCNNGA 3 cut(s) 56, 236, 338
Hpy8I GTNNAC 2 cut(s) 42, 253
Hpy99I CGWCG 1 cut(s) 29
HpyAV CCTTC 2 cut(s) 344, 362
HpyCH4III ACNGT 3 cut(s) 46, 75, 92
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 5 cut(s) 85, 161, 221, 279, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 213
HpyF3I CTNAG 2 cut(s) 138, 321
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 8 cut(s) 89, 230, 239, 266, 283, 341, 359, 363
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 4 cut(s) 115, 127, 166, 232
LpnPI CCDG 3 cut(s) 150, 200, 297
Lsp1109I GCAGC 1 cut(s) 219
LweI GCATC 3 cut(s) 55, 59, 208
MaeI CTAG 2 cut(s) 56, 150
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 92
MalI GATC 4 cut(s) 117, 129, 168, 234
MboI GATC 4 cut(s) 115, 127, 166, 232
MboII GAAGA 1 cut(s) 254
MfeI CAATTG 1 cut(s) 19
MluCI AATT 2 cut(s) 19, 170
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 3 cut(s) 133, 294, 303
Mph1103I ATGCAT 2 cut(s) 281, 361
MseI TTAA 1 cut(s) 108
MunI CAATTG 1 cut(s) 19
MwoI GCNNNNNNNGC 2 cut(s) 30, 213
NdeII GATC 4 cut(s) 115, 127, 166, 232
NlaIII CATG 8 cut(s) 89, 230, 239, 266, 283, 341, 359, 363
NmuCI GTSAC 1 cut(s) 92
NsiI ATGCAT 2 cut(s) 281, 361
NspI RCATGY 1 cut(s) 283
PaeI GCATGC 1 cut(s) 283
PagI TCATGA 2 cut(s) 235, 337
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PfeI GAWTC 1 cut(s) 259
PkrI GCNGC 2 cut(s) 209, 306
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
PspPI GGNCC 1 cut(s) 6
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 2 cut(s) 208, 305
Sau3AI GATC 4 cut(s) 115, 127, 166, 232
Sau96I GGNCC 1 cut(s) 6
SchI GAGTC 1 cut(s) 332
SetI ASST 3 cut(s) 144, 252, 295
SfaNI GCATC 3 cut(s) 55, 59, 208
SinI GGWCC 1 cut(s) 6
SmlI CTYRAG 1 cut(s) 294
SmoI CTYRAG 1 cut(s) 294
SphI GCATGC 1 cut(s) 283
Sse9I AATT 2 cut(s) 19, 170
SsiI CCGC 1 cut(s) 305
SspMI CTAG 2 cut(s) 56, 150
TaaI ACNGT 3 cut(s) 46, 75, 92
TaiI ACGT 1 cut(s) 252
TasI AATT 2 cut(s) 19, 170
TauI GCSGC 1 cut(s) 307
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 1 cut(s) 207
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 3 cut(s) 251, 326, 344
VpaK11BI GGWCC 1 cut(s) 6
XbaI TCTAGA 1 cut(s) 55
XceI RCATGY 1 cut(s) 283
XspI CTAG 2 cut(s) 56, 150
Zsp2I ATGCAT 2 cut(s) 281, 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.