Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004229

Physical Location & Seq

Genomic Coordinates Reverse (-)

49540385 .. 49542509

Gene Structure 2125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00367720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCTGCACTATTCCCAGTATTGATTACCATCATGAGGACCATACTTACCATTTGCGTCGTTGGCTTGGTATTGACGGTGGCATCTCTAGAAGCCGATGCTAAACGGTTTGTTTTGCATGACCGTCACTTGGTTCAAGTTAAAACTGATCCAAATATGGATCAAAACCCTGAGGTTCTTGCTAGTGGTGGTGCAAAAGATCAATCTCAGTCTCGGTCCCAGACCACAAGTAAGGGTAGCAGCAGCAGCGACGCAAAGCATGATGATCATGATGACGATATTCTTGGTAAGTACAGTAATGGCGCTACAACCCAATGCATGGCAGATAAAAAGAGGCCTCATTGTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

12.61

Weight (kDa)

6.95

Isoelectric Point (pI)

42.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004229)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20030 FvH4_4g20300
malus_domestica	MD16G1151900.v1.1
prunus_persica	Prupe.1G115400_v2.0.a1
rosa_laevigata	RLG00000007343 RLG00000008687 RLG00000013101 RLG00000036563
rosa_roxburghii	Rroxscaffold_1G00006070 Rroxscaffold_5G00352500 Rroxscaffold_5G00367720 Rroxscaffold_5G00367730
rosa_rugosa	Rorug04G0082500 Rorug04G0082600 Rorug04G0082700 Rorug04G0205600 Rorug04G0205700 Rorug05G0439500 Rorug05G0439600
rosa_samantha	Rh4AG147200 Rh4AG262400 Rh4AG262500 Rh4CG154000 Rh4CG280200 Rh4CG280500 Rh4DG141300 Rh4DG264300 Rh5AG496500 Rh5AG496600 Rh5BG517900 Rh5DG531400 Rh5DG531500
rosa_wichuraiana	Rw5G046060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	319
AclWI	GGATC	2 cut(s)	143, 168
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	3 cut(s)	36, 130, 319
AgsI	TTSAA	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	2 cut(s)	143, 168
AoxI	GGCC	1 cut(s)	335
ApeKI	GCWGC	4 cut(s)	5, 240, 243, 246
AspLEI	GCGC	1 cut(s)	305
AspS9I	GGNCC	2 cut(s)	39, 216
AvaII	GGWCC	2 cut(s)	39, 216
AxyI	CCTNAGG	1 cut(s)	171
BbvI	GCAGC	3 cut(s)	252, 255, 258
BccI	CCATC	1 cut(s)	38
BclI	TGATCA	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	2 cut(s)	89, 183
BfoI	RGCGCY	1 cut(s)	306
BisI	GCNGC	4 cut(s)	6, 241, 244, 247
BlsI	GCNGC	4 cut(s)	7, 242, 245, 248
Bme18I	GGWCC	2 cut(s)	39, 216
BmgT120I	GGNCC	2 cut(s)	39, 216
BmiI	GGNNCC	1 cut(s)	218
BmrI	ACTGGG	1 cut(s)	11
BmsI	GCATC	2 cut(s)	88, 92
BmuI	ACTGGG	1 cut(s)	11
BsaBI	GATNNNNATC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 130, 319
Bse1I	ACTGG	1 cut(s)	17
Bse21I	CCTNAGG	1 cut(s)	171
Bse8I	GATNNNNATC	1 cut(s)	29
BseJI	GATNNNNATC	1 cut(s)	29
BseLI	CCNNNNNNNGG	3 cut(s)	36, 130, 319
BseMII	CTCAG	2 cut(s)	162, 221
BseNI	ACTGG	1 cut(s)	17
BseXI	GCAGC	3 cut(s)	252, 255, 258
BshFI	GGCC	1 cut(s)	337
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	3 cut(s)	36, 130, 319
BsmAI	GTCTC	1 cut(s)	216
BsmFI	GGGAC	1 cut(s)	202
BsnI	GGCC	1 cut(s)	337
Bsp143I	GATC	4 cut(s)	148, 160, 199, 265
BspANI	GGCC	1 cut(s)	337
BspCNI	CTCAG	2 cut(s)	163, 220
BspHI	TCATGA	2 cut(s)	33, 268
BspLI	GGNNCC	1 cut(s)	218
BspPI	GGATC	2 cut(s)	143, 168
BsrI	ACTGG	1 cut(s)	17
BssMI	GATC	4 cut(s)	148, 160, 199, 265
Bst4CI	ACNGT	4 cut(s)	79, 108, 125, 296
BstDEI	CTNAG	2 cut(s)	171, 207
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	4 cut(s)	151, 163, 202, 268
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	4 cut(s)	148, 160, 199, 265
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 246
BstV1I	GCAGC	3 cut(s)	252, 255, 258
Bsu36I	CCTNAGG	1 cut(s)	171
BsuRI	GGCC	1 cut(s)	337
CciI	TCATGA	2 cut(s)	33, 268
CfoI	GCGC	1 cut(s)	305
Cfr13I	GGNCC	2 cut(s)	39, 216
CseI	GACGC	2 cut(s)	46, 260
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	5 cut(s)	34, 119, 260, 269, 319
CviJI	RGCY	4 cut(s)	5, 66, 95, 337
CviKI_1	RGCY	4 cut(s)	5, 66, 95, 337
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	2 cut(s)	171, 207
DpnI	GATC	4 cut(s)	150, 162, 201, 267
DpnII	GATC	4 cut(s)	148, 160, 199, 265
Eco147I	AGGCCT	1 cut(s)	337
Eco47I	GGWCC	2 cut(s)	39, 216
Eco81I	CCTNAGG	1 cut(s)	171
EcoT22I	ATGCAT	1 cut(s)	320
FaeI	CATG	5 cut(s)	37, 122, 263, 272, 322
FaiI	YATR	7 cut(s)	35, 44, 120, 158, 261, 270, 320
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	5 cut(s)	33, 118, 259, 268, 318
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	4 cut(s)	6, 241, 244, 247
Fsp4HI	GCNGC	4 cut(s)	6, 241, 244, 247
FspBI	CTAG	2 cut(s)	89, 183
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	4 cut(s)	6, 241, 244, 247
HaeII	RGCGCY	1 cut(s)	306
HaeIII	GGCC	1 cut(s)	337
HgaI	GACGC	2 cut(s)	46, 260
HhaI	GCGC	1 cut(s)	305
Hin1II	CATG	5 cut(s)	37, 122, 263, 272, 322
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
Hpy188III	TCNNGA	3 cut(s)	34, 89, 269
Hpy99I	CGWCG	2 cut(s)	62, 254
HpyCH4III	ACNGT	4 cut(s)	79, 108, 125, 296
HpyCH4V	TGCA	4 cut(s)	8, 118, 194, 318
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 246
HpyF3I	CTNAG	2 cut(s)	171, 207
Hsp92II	CATG	5 cut(s)	37, 122, 263, 272, 322
HspAI	GCGC	1 cut(s)	303
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	4 cut(s)	148, 160, 199, 265
LpnPI	CCDG	3 cut(s)	30, 183, 233
Lsp1109I	GCAGC	3 cut(s)	252, 255, 258
LweI	GCATC	2 cut(s)	88, 92
MaeI	CTAG	2 cut(s)	89, 183
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	4 cut(s)	150, 162, 201, 267
MboI	GATC	4 cut(s)	148, 160, 199, 265
MnlI	CCTC	4 cut(s)	30, 166, 327, 348
Mph1103I	ATGCAT	1 cut(s)	320
MseI	TTAA	2 cut(s)	141, 349
MwoI	GCNNNNNNNGC	2 cut(s)	63, 246
NdeII	GATC	4 cut(s)	148, 160, 199, 265
NlaIII	CATG	5 cut(s)	37, 122, 263, 272, 322
NlaIV	GGNNCC	1 cut(s)	218
NmuCI	GTSAC	1 cut(s)	125
NsiI	ATGCAT	1 cut(s)	320
PagI	TCATGA	2 cut(s)	33, 268
PceI	AGGCCT	1 cut(s)	337
PflMI	CCANNNNNTGG	1 cut(s)	319
PkrI	GCNGC	4 cut(s)	7, 242, 245, 248
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	2 cut(s)	39, 216
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SaqAI	TTAA	2 cut(s)	141, 349
SatI	GCNGC	4 cut(s)	6, 241, 244, 247
Sau3AI	GATC	4 cut(s)	148, 160, 199, 265
Sau96I	GGNCC	2 cut(s)	39, 216
SetI	ASST	1 cut(s)	177
SfaNI	GCATC	2 cut(s)	88, 92
SinI	GGWCC	2 cut(s)	39, 216
SseBI	AGGCCT	1 cut(s)	337
SspMI	CTAG	2 cut(s)	89, 183
StuI	AGGCCT	1 cut(s)	337
TaaI	ACNGT	4 cut(s)	79, 108, 125, 296
TaqII	GACCGA	1 cut(s)	204
TatI	WGTACW	1 cut(s)	291
Tru1I	TTAA	2 cut(s)	141, 349
Tru9I	TTAA	2 cut(s)	141, 349
TseFI	GTSAC	1 cut(s)	125
TseI	GCWGC	4 cut(s)	5, 240, 243, 246
Tsp45I	GTSAC	1 cut(s)	125
Van91I	CCANNNNNTGG	1 cut(s)	319
VpaK11BI	GGWCC	2 cut(s)	39, 216
XbaI	TCTAGA	1 cut(s)	88
XspI	CTAG	2 cut(s)	89, 183
Zsp2I	ATGCAT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.