Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004229

Physical Location & Seq

Genomic Coordinates Forward (+)

80164011 .. 80164364

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G046060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAGGACCATACTTACCATATGCGTCGTTGGCTTTGTGTTGATGGTGGCATCTCTACAAGCCGATGCTAAACGGTTTGTTTTGCACGACCGTCACTTGGCTCAAGTCACAAATGATCCAAATATGGATCAAGCCCCTGAGGTTCTTGCTAGTGGTGATGCAAAAGATCATCAGTCTCAGTCCCAGATCACAAGCAAGGGTAGCAGCAACAGCGATGCTAAGCATGATGATCATGCCGACGATGATGTGAACGATAGTTATGGTAAGTCCGGACATGGCTCTTCCGAAAGTGACTCTCTCAGTGGATATGGAGCCGCATGCAATGGAGATCGAAAGAGGCCTCATTGTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

117

Amino Acids

12.51

Weight (kDa)

5.48

Isoelectric Point (pI)

36.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004229)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g20030 FvH4_4g20300
malus_domestica	MD16G1151900.v1.1
prunus_persica	Prupe.1G115400_v2.0.a1
rosa_laevigata	RLG00000007343 RLG00000008687 RLG00000013101 RLG00000036563
rosa_roxburghii	Rroxscaffold_1G00006070 Rroxscaffold_5G00352500 Rroxscaffold_5G00367720 Rroxscaffold_5G00367730
rosa_rugosa	Rorug04G0082500 Rorug04G0082600 Rorug04G0082700 Rorug04G0205600 Rorug04G0205700 Rorug05G0439500 Rorug05G0439600
rosa_samantha	Rh4AG147200 Rh4AG262400 Rh4AG262500 Rh4CG154000 Rh4CG280200 Rh4CG280500 Rh4DG141300 Rh4DG264300 Rh5AG496500 Rh5AG496600 Rh5BG517900 Rh5DG531400 Rh5DG531500
rosa_wichuraiana	Rw5G046060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	269
AciI	CCGC	1 cut(s)	315
AclWI	GGATC	2 cut(s)	110, 135
AfiI	CCNNNNNNNGG	1 cut(s)	97
Alw26I	GTCTC	1 cut(s)	180
AlwI	GGATC	2 cut(s)	110, 135
Aor13HI	TCCGGA	1 cut(s)	269
AoxI	GGCC	1 cut(s)	338
ApeKI	GCWGC	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	6
AsuHPI	GGTGA	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	6
AxyI	CCTNAGG	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	216
BccI	CCATC	1 cut(s)	37
BclI	TGATCA	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	1 cut(s)	150
BisI	GCNGC	2 cut(s)	205, 315
BlpI	GCTNAGC	1 cut(s)	219
BlsI	GCNGC	2 cut(s)	206, 316
Bme18I	GGWCC	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	6
BmiI	GGNNCC	1 cut(s)	313
BmsI	GCATC	4 cut(s)	55, 59, 148, 205
Bpu1102I	GCTNAGC	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	87
BsaWI	WCCGGW	1 cut(s)	269
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse21I	CCTNAGG	1 cut(s)	138
Bse3DI	GCAATG	1 cut(s)	328
BseAI	TCCGGA	1 cut(s)	269
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	328
BseMII	CTCAG	3 cut(s)	129, 191, 313
BseXI	GCAGC	1 cut(s)	216
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	340
BsiEI	CGRYCG	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	166
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmAI	GTCTC	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	340
Bsp13I	TCCGGA	1 cut(s)	269
Bsp143I	GATC	6 cut(s)	115, 127, 166, 186, 229, 328
Bsp1720I	GCTNAGC	1 cut(s)	219
BspACI	CCGC	1 cut(s)	315
BspANI	GGCC	1 cut(s)	340
BspCNI	CTCAG	3 cut(s)	130, 190, 312
BspEI	TCCGGA	1 cut(s)	269
BspLI	GGNNCC	1 cut(s)	313
BspPI	GGATC	2 cut(s)	110, 135
BspQI	GCTCTTC	1 cut(s)	286
BsrDI	GCAATG	1 cut(s)	328
BssMI	GATC	6 cut(s)	115, 127, 166, 186, 229, 328
Bst4CI	ACNGT	2 cut(s)	75, 92
Bst6I	CTCTTC	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	319
BstDEI	CTNAG	4 cut(s)	138, 177, 219, 299
BstKTI	GATC	6 cut(s)	118, 130, 169, 189, 232, 331
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	6 cut(s)	115, 127, 166, 186, 229, 328
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	3 cut(s)	30, 201, 210
BstNSI	RCATGY	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	216
Bsu36I	CCTNAGG	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	340
BtgZI	GCGATG	1 cut(s)	228
BtsIMutI	CAGTG	1 cut(s)	307
Cac8I	GCNNGC	1 cut(s)	319
Cfr13I	GGNCC	1 cut(s)	6
CseI	GACGC	1 cut(s)	13
CviAII	CATG	4 cut(s)	224, 233, 275, 318
CviJI	RGCY	7 cut(s)	33, 62, 101, 134, 279, 314, 340
CviKI_1	RGCY	7 cut(s)	33, 62, 101, 134, 279, 314, 340
DdeI	CTNAG	4 cut(s)	138, 177, 219, 299
DpnI	GATC	6 cut(s)	117, 129, 168, 188, 231, 330
DpnII	GATC	6 cut(s)	115, 127, 166, 186, 229, 328
Eam1104I	CTCTTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	286
Eco147I	AGGCCT	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	6
Eco81I	CCTNAGG	1 cut(s)	138
FaeI	CATG	4 cut(s)	227, 236, 278, 321
FaqI	GGGAC	1 cut(s)	166
FatI	CATG	4 cut(s)	223, 232, 274, 317
FauNDI	CATATG	1 cut(s)	20
FbaI	TGATCA	1 cut(s)	229
Fnu4HI	GCNGC	2 cut(s)	205, 315
Fsp4HI	GCNGC	2 cut(s)	205, 315
FspBI	CTAG	1 cut(s)	150
GluI	GCNGC	2 cut(s)	205, 315
HaeIII	GGCC	1 cut(s)	340
HapII	CCGG	1 cut(s)	270
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	4 cut(s)	227, 236, 278, 321
HinfI	GANTC	1 cut(s)	293
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	1 cut(s)	286
Hpy188III	TCNNGA	1 cut(s)	270
Hpy8I	GTNNAC	1 cut(s)	250
Hpy99I	CGWCG	2 cut(s)	29, 242
HpyCH4III	ACNGT	2 cut(s)	75, 92
HpyCH4V	TGCA	3 cut(s)	85, 161, 321
HpyF10VI	GCNNNNNNNGC	3 cut(s)	30, 201, 210
HpyF3I	CTNAG	4 cut(s)	138, 177, 219, 299
Hsp92II	CATG	4 cut(s)	227, 236, 278, 321
Kpn2I	TCCGGA	1 cut(s)	269
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	6 cut(s)	115, 127, 166, 186, 229, 328
LguI	GCTCTTC	1 cut(s)	286
LmnI	GCTCC	1 cut(s)	311
LpnPI	CCDG	3 cut(s)	150, 197, 283
Lsp1109I	GCAGC	1 cut(s)	216
LweI	GCATC	4 cut(s)	55, 59, 148, 205
MaeI	CTAG	1 cut(s)	150
MaeIII	GTNAC	3 cut(s)	92, 106, 290
MalI	GATC	6 cut(s)	117, 129, 168, 188, 231, 330
MboI	GATC	6 cut(s)	115, 127, 166, 186, 229, 328
MboII	GAAGA	1 cut(s)	273
MluCI	AATT	1 cut(s)	349
MlyI	GAGTC	1 cut(s)	287
MnlI	CCTC	3 cut(s)	133, 330, 351
MroI	TCCGGA	1 cut(s)	269
MseI	TTAA	1 cut(s)	352
MspI	CCGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	3 cut(s)	30, 201, 210
NdeI	CATATG	1 cut(s)	20
NdeII	GATC	6 cut(s)	115, 127, 166, 186, 229, 328
NlaIII	CATG	4 cut(s)	227, 236, 278, 321
NlaIV	GGNNCC	1 cut(s)	313
NmuCI	GTSAC	3 cut(s)	92, 106, 290
NspI	RCATGY	1 cut(s)	321
PaeI	GCATGC	1 cut(s)	321
PceI	AGGCCT	1 cut(s)	340
PciSI	GCTCTTC	1 cut(s)	286
PkrI	GCNGC	2 cut(s)	206, 316
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	313
PspPI	GGNCC	1 cut(s)	6
SapI	GCTCTTC	1 cut(s)	286
SaqAI	TTAA	1 cut(s)	352
SatI	GCNGC	2 cut(s)	205, 315
Sau3AI	GATC	6 cut(s)	115, 127, 166, 186, 229, 328
Sau96I	GGNCC	1 cut(s)	6
SchI	GAGTC	1 cut(s)	287
SetI	ASST	1 cut(s)	144
SfaNI	GCATC	4 cut(s)	55, 59, 148, 205
SinI	GGWCC	1 cut(s)	6
SmlI	CTYRAG	1 cut(s)	102
SmoI	CTYRAG	1 cut(s)	102
SphI	GCATGC	1 cut(s)	321
Sse9I	AATT	1 cut(s)	349
SseBI	AGGCCT	1 cut(s)	340
SsiI	CCGC	1 cut(s)	315
SspMI	CTAG	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	340
TaaI	ACNGT	2 cut(s)	75, 92
TaqI	TCGA	1 cut(s)	331
TasI	AATT	1 cut(s)	349
TauI	GCSGC	1 cut(s)	317
Tru1I	TTAA	1 cut(s)	352
Tru9I	TTAA	1 cut(s)	352
TscAI	CASTG	1 cut(s)	307
TseFI	GTSAC	3 cut(s)	92, 106, 290
TseI	GCWGC	1 cut(s)	204
Tsp45I	GTSAC	3 cut(s)	92, 106, 290
TspRI	CASTG	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	6
XceI	RCATGY	1 cut(s)	321
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.