Rroxscaffold_5G00352500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004229
Physical Location & Seq
Forward (+)
29575728 .. 29576042
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00352500.1

Sequence Viewer

Length: 315 bp
ATGAGGACCATACTTACCATTTGCGTCGTTGGCTTGCTGTTGACGGTGGCATCTCTAGAAGCCGATGCTAAACGGTTTGTTTTGCATGACCGTCACTTGGTTCAAGTTAAAACTGATCCAAAAATGCATCAAAACCCTGAGGTTCTTGCTAGTGGTGGTGCAAAAGATCAATTTCAGTTTCAGTCCCAGACCACAAGTAAGGGTAGCAGCAACAGCGATGCAAAGCATGATGATCATGACGAAGATGACGTGAACGAGATTCATGGTACAATCGAATGCATGCCAGATAAGCCTCAAGGGAGGCCGCATTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.52

Weight (kDa)

5.71

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 305
AclWI GGATC 1 cut(s) 110
AfaI GTAC 1 cut(s) 268
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 1 cut(s) 104
AjiI CACGTC 1 cut(s) 250
AlwI GGATC 1 cut(s) 110
AoxI GGCC 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 6
AvaII GGWCC 1 cut(s) 6
AxyI CCTNAGG 1 cut(s) 138
BbvI GCAGC 1 cut(s) 219
BclI TGATCA 1 cut(s) 232
BfaI CTAG 2 cut(s) 56, 150
BisI GCNGC 2 cut(s) 208, 305
BlsI GCNGC 2 cut(s) 209, 306
Bme18I GGWCC 1 cut(s) 6
BmgBI CACGTC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 6
BmsI GCATC 4 cut(s) 55, 59, 136, 208
BpuEI CTTGAG 1 cut(s) 279
Bsc4I CCNNNNNNNGG 1 cut(s) 97
Bse21I CCTNAGG 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMII CTCAG 1 cut(s) 129
BseXI GCAGC 1 cut(s) 219
BshFI GGCC 1 cut(s) 304
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 97
BsmFI GGGAC 1 cut(s) 169
BsmI GAATGC 1 cut(s) 281
BsnI GGCC 1 cut(s) 304
Bsp143I GATC 3 cut(s) 115, 166, 232
BspACI CCGC 1 cut(s) 305
BspANI GGCC 1 cut(s) 304
BspCNI CTCAG 1 cut(s) 130
BspHI TCATGA 1 cut(s) 235
BspPI GGATC 1 cut(s) 110
BssMI GATC 3 cut(s) 115, 166, 232
Bst4CI ACNGT 3 cut(s) 46, 75, 92
BstC8I GCNNGC 2 cut(s) 35, 281
BstDEI CTNAG 1 cut(s) 138
BstKTI GATC 3 cut(s) 118, 169, 235
BstMBI GATC 3 cut(s) 115, 166, 232
BstMWI GCNNNNNNNGC 3 cut(s) 30, 213, 289
BstNSI RCATGY 1 cut(s) 283
BstV1I GCAGC 1 cut(s) 219
Bsu36I CCTNAGG 1 cut(s) 138
BsuRI GGCC 1 cut(s) 304
BtgZI GCGATG 1 cut(s) 231
BtrI CACGTC 1 cut(s) 250
Cac8I GCNNGC 2 cut(s) 35, 281
CciI TCATGA 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 6
CseI GACGC 1 cut(s) 13
Csp6I GTAC 1 cut(s) 267
CviAII CATG 5 cut(s) 86, 227, 236, 263, 280
CviJI RGCY 4 cut(s) 33, 62, 292, 304
CviKI_1 RGCY 4 cut(s) 33, 62, 292, 304
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 1 cut(s) 138
DpnI GATC 3 cut(s) 117, 168, 234
DpnII GATC 3 cut(s) 115, 166, 232
Eco47I GGWCC 1 cut(s) 6
Eco81I CCTNAGG 1 cut(s) 138
EcoT22I ATGCAT 2 cut(s) 129, 281
FaeI CATG 5 cut(s) 89, 230, 239, 266, 283
FaiI YATR 6 cut(s) 11, 87, 228, 237, 264, 281
FaqI GGGAC 1 cut(s) 169
FatI CATG 5 cut(s) 85, 226, 235, 262, 279
FbaI TGATCA 1 cut(s) 232
Fnu4HI GCNGC 2 cut(s) 208, 305
Fsp4HI GCNGC 2 cut(s) 208, 305
FspBI CTAG 2 cut(s) 56, 150
GluI GCNGC 2 cut(s) 208, 305
HaeIII GGCC 1 cut(s) 304
HgaI GACGC 1 cut(s) 13
Hin1II CATG 5 cut(s) 89, 230, 239, 266, 283
HincII GTYRAC 1 cut(s) 42
HindII GTYRAC 1 cut(s) 42
HinfI GANTC 1 cut(s) 259
Hpy166II GTNNAC 2 cut(s) 42, 253
Hpy188III TCNNGA 2 cut(s) 56, 236
Hpy8I GTNNAC 2 cut(s) 42, 253
Hpy99I CGWCG 1 cut(s) 29
HpyCH4III ACNGT 3 cut(s) 46, 75, 92
HpyCH4IV ACGT 1 cut(s) 249
HpyCH4V TGCA 5 cut(s) 85, 127, 161, 221, 279
HpyF10VI GCNNNNNNNGC 3 cut(s) 30, 213, 289
HpyF3I CTNAG 1 cut(s) 138
HpySE526I ACGT 1 cut(s) 249
Hsp92II CATG 5 cut(s) 89, 230, 239, 266, 283
Ksp22I TGATCA 1 cut(s) 232
Kzo9I GATC 3 cut(s) 115, 166, 232
LpnPI CCDG 3 cut(s) 150, 200, 297
Lsp1109I GCAGC 1 cut(s) 219
LweI GCATC 4 cut(s) 55, 59, 136, 208
MaeI CTAG 2 cut(s) 56, 150
MaeII ACGT 1 cut(s) 249
MaeIII GTNAC 1 cut(s) 92
MalI GATC 3 cut(s) 117, 168, 234
MboI GATC 3 cut(s) 115, 166, 232
MboII GAAGA 1 cut(s) 254
MluCI AATT 1 cut(s) 170
MnlI CCTC 3 cut(s) 133, 294, 303
Mph1103I ATGCAT 2 cut(s) 129, 281
MseI TTAA 1 cut(s) 108
Mva1269I GAATGC 1 cut(s) 281
MwoI GCNNNNNNNGC 3 cut(s) 30, 213, 289
NdeII GATC 3 cut(s) 115, 166, 232
NlaIII CATG 5 cut(s) 89, 230, 239, 266, 283
NmuCI GTSAC 1 cut(s) 92
NsiI ATGCAT 2 cut(s) 129, 281
NspI RCATGY 1 cut(s) 283
PaeI GCATGC 1 cut(s) 283
PagI TCATGA 1 cut(s) 235
PcsI WCGNNNNNNNCGW 1 cut(s) 246
PctI GAATGC 1 cut(s) 281
PfeI GAWTC 1 cut(s) 259
PkrI GCNGC 2 cut(s) 209, 306
PspPI GGNCC 1 cut(s) 6
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 2 cut(s) 208, 305
Sau3AI GATC 3 cut(s) 115, 166, 232
Sau96I GGNCC 1 cut(s) 6
SetI ASST 2 cut(s) 144, 252
SfaNI GCATC 4 cut(s) 55, 59, 136, 208
SinI GGWCC 1 cut(s) 6
SmlI CTYRAG 1 cut(s) 294
SmoI CTYRAG 1 cut(s) 294
SphI GCATGC 1 cut(s) 283
Sse9I AATT 1 cut(s) 170
SsiI CCGC 1 cut(s) 305
SspMI CTAG 2 cut(s) 56, 150
TaaI ACNGT 3 cut(s) 46, 75, 92
TaiI ACGT 1 cut(s) 252
TaqI TCGA 1 cut(s) 273
TasI AATT 1 cut(s) 170
TauI GCSGC 1 cut(s) 307
TfiI GAWTC 1 cut(s) 259
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 1 cut(s) 207
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 6
XbaI TCTAGA 1 cut(s) 55
XceI RCATGY 1 cut(s) 283
XspI CTAG 2 cut(s) 56, 150
Zsp2I ATGCAT 2 cut(s) 129, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.