Rh4CG280500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0004229
Physical Location & Seq
Reverse (-)
53716493 .. 53717555
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG280500.1

Sequence Viewer

Length: 318 bp
ATGAGGACCATACTTGTCATATGCGCTATTGGCTTTGTGTTGATGGTGTCATCTCTGCAAGCCGATGCTAAACGGTTTGTTTTGAATGACCGTCACTTGGTTCAAGTTAAGAATGAGCCAACTCTTACTAGTGGCGGTGCAAAAGATCAGTCTCAGTCTCAGCCCCGGACCACAAACAAGGGTAGCAGCAACAGCGATGCTAAATATGATGATCTTGCCGACGATGATGCAAACGAGACTTATGGTAAGTACGGACATGGCTCTTCCGAAAGTGACTCTCACCGTTATTTTACCGACGATACATTCAGGCCCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.63

Weight (kDa)

5.7

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 135
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 2 cut(s) 85, 104
AhlI ACTAGT 1 cut(s) 128
Alw26I GTCTC 3 cut(s) 156, 162, 230
AoxI GGCC 1 cut(s) 308
ApeKI GCWGC 1 cut(s) 186
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 3 cut(s) 6, 168, 309
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 272
AvaII GGWCC 2 cut(s) 6, 168
BbvI GCAGC 1 cut(s) 198
BccI CCATC 1 cut(s) 37
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BcnI CCSGG 1 cut(s) 166
BcoDI GTCTC 3 cut(s) 156, 162, 230
BcuI ACTAGT 1 cut(s) 128
BfaI CTAG 1 cut(s) 129
BisI GCNGC 1 cut(s) 187
BlsI GCNGC 1 cut(s) 188
Bme1390I CCNGG 1 cut(s) 166
Bme18I GGWCC 2 cut(s) 6, 168
BmgT120I GGNCC 3 cut(s) 6, 168, 309
BmiI GGNNCC 1 cut(s) 311
BmrFI CCNGG 1 cut(s) 166
BmsI GCATC 3 cut(s) 55, 187, 217
BpuMI CCSGG 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 164
Bsc4I CCNNNNNNNGG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 164
BseLI CCNNNNNNNGG 1 cut(s) 97
BseMII CTCAG 2 cut(s) 167, 173
BseXI GCAGC 1 cut(s) 198
BshFI GGCC 1 cut(s) 310
BsiSI CCGG 1 cut(s) 166
BslI CCNNNNNNNGG 1 cut(s) 97
BsmAI GTCTC 3 cut(s) 156, 162, 230
BsnI GGCC 1 cut(s) 310
Bsp143I GATC 2 cut(s) 145, 211
BspACI CCGC 1 cut(s) 135
BspANI GGCC 1 cut(s) 310
BspCNI CTCAG 2 cut(s) 166, 172
BspLI GGNNCC 1 cut(s) 311
BspQI GCTCTTC 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 2 cut(s) 145, 211
Bst4CI ACNGT 3 cut(s) 75, 92, 284
Bst6I CTCTTC 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 60
BstDEI CTNAG 2 cut(s) 153, 159
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 2 cut(s) 148, 214
BstMAI GTCTC 3 cut(s) 156, 162, 230
BstMBI GATC 2 cut(s) 145, 211
BstMWI GCNNNNNNNGC 2 cut(s) 30, 192
BstSCI CCNGG 1 cut(s) 164
BstV1I GCAGC 1 cut(s) 198
BsuRI GGCC 1 cut(s) 310
BtgZI GCGATG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 60
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 3 cut(s) 6, 168, 309
Csp6I GTAC 1 cut(s) 250
CviAII CATG 1 cut(s) 257
CviJI RGCY 6 cut(s) 33, 62, 118, 163, 261, 310
CviKI_1 RGCY 6 cut(s) 33, 62, 118, 163, 261, 310
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 2 cut(s) 153, 159
DpnI GATC 2 cut(s) 147, 213
DpnII GATC 2 cut(s) 145, 211
Eam1104I CTCTTC 1 cut(s) 268
EarI CTCTTC 1 cut(s) 268
Eco47I GGWCC 2 cut(s) 6, 168
EcoO109I RGGNCCY 1 cut(s) 309
FaeI CATG 1 cut(s) 260
FaiI YATR 6 cut(s) 11, 20, 22, 207, 243, 258
FatI CATG 1 cut(s) 256
FauNDI CATATG 1 cut(s) 20
Fnu4HI GCNGC 1 cut(s) 187
Fsp4HI GCNGC 1 cut(s) 187
FspBI CTAG 1 cut(s) 129
GlaI GCGC 1 cut(s) 25
GluI GCNGC 1 cut(s) 187
HaeIII GGCC 1 cut(s) 310
HapII CCGG 1 cut(s) 166
HhaI GCGC 1 cut(s) 26
Hin1II CATG 1 cut(s) 260
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HinfI GANTC 1 cut(s) 275
HpaII CCGG 1 cut(s) 166
HphI GGTGA 1 cut(s) 272
Hpy188I TCNGA 1 cut(s) 268
Hpy99I CGWCG 2 cut(s) 224, 299
HpyCH4III ACNGT 3 cut(s) 75, 92, 284
HpyCH4V TGCA 3 cut(s) 58, 140, 230
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 192
HpyF3I CTNAG 2 cut(s) 153, 159
Hsp92II CATG 1 cut(s) 260
HspAI GCGC 1 cut(s) 24
Kzo9I GATC 2 cut(s) 145, 211
LguI GCTCTTC 1 cut(s) 268
LpnPI CCDG 2 cut(s) 179, 292
Lsp1109I GCAGC 1 cut(s) 198
LweI GCATC 3 cut(s) 55, 187, 217
MaeI CTAG 1 cut(s) 129
MaeIII GTNAC 2 cut(s) 92, 272
MalI GATC 2 cut(s) 147, 213
MboI GATC 2 cut(s) 145, 211
MboII GAAGA 1 cut(s) 255
MlyI GAGTC 1 cut(s) 269
MseI TTAA 2 cut(s) 108, 316
MspI CCGG 1 cut(s) 166
MspR9I CCNGG 1 cut(s) 166
MwoI GCNNNNNNNGC 2 cut(s) 30, 192
NciI CCSGG 1 cut(s) 166
NdeI CATATG 1 cut(s) 20
NdeII GATC 2 cut(s) 145, 211
NlaIII CATG 1 cut(s) 260
NlaIV GGNNCC 1 cut(s) 311
NmuCI GTSAC 2 cut(s) 92, 272
PciSI GCTCTTC 1 cut(s) 268
PkrI GCNGC 1 cut(s) 188
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PspN4I GGNNCC 1 cut(s) 311
PspPI GGNCC 3 cut(s) 6, 168, 309
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SapI GCTCTTC 1 cut(s) 268
SaqAI TTAA 2 cut(s) 108, 316
SatI GCNGC 1 cut(s) 187
Sau3AI GATC 2 cut(s) 145, 211
Sau96I GGNCC 3 cut(s) 6, 168, 309
SchI GAGTC 1 cut(s) 269
ScrFI CCNGG 1 cut(s) 166
SfaNI GCATC 3 cut(s) 55, 187, 217
SinI GGWCC 2 cut(s) 6, 168
SpeI ACTAGT 1 cut(s) 128
SsiI CCGC 1 cut(s) 135
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 164
TaaI ACNGT 3 cut(s) 75, 92, 284
Tru1I TTAA 2 cut(s) 108, 316
Tru9I TTAA 2 cut(s) 108, 316
TseFI GTSAC 2 cut(s) 92, 272
TseI GCWGC 1 cut(s) 186
Tsp45I GTSAC 2 cut(s) 92, 272
TspGWI ACGGA 1 cut(s) 267
VpaK11BI GGWCC 2 cut(s) 6, 168
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.