Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001557

Physical Location & Seq

Genomic Coordinates Forward (+)

792876 .. 797933

Gene Structure 5058 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01274.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2637 bp

ATGGCCAATCTGGGTTATAAGGAATCGCTGTCATTTGGAGGCTCAGGCCATGCGCAGGGGCAACAAGTTGTGCCATTTGAGAGTGGTGCATTGAAGCTTTTGCTACATGGGGCCCTAGTTATATGTGTCAATGAGGCCAAGAACCTTCCTGCCATGGAGGGTTTGCATAAGCATATGGGGCGTGTCATTGCGAAAGTGCCTGGGAGAAGTAGCAAAACAACAACCAGTGCTCCCTATGTTACAATTGCACTGTCAGGTGCTGTAGTTGGGAGGACCTTTGTGATTAGTAATAATCAGAACCCGGTTTGGAAGCAGCATTTTGATGTTCCGGTCGCGCACTATGCTTCAGAAGTGCATTTTGTTGTGAAGCATAATGATATGGTGGGATCTCAGATCATAGGTTCTGTGGGTATCCCAGTTGAAGAGTTATACGCTGGTTTTAAAATTGAGGGAACCTTCCCTATTCTTAACTCCACCGGTCATATCTGTATGCCTGGAGTTGTTTTGAGCTTATCAATTCAGTATACCTCATTTGAAAAGTTGACCTTTTATAATCGTGGGATAGGTTCAGATCCTGATCATCAAGGGGTCCCTGGTACTTACTTTCCTCTTAGGAGAGGTGGTAAAGTAACTCTGTATCAAGATGCTCATGTTCCTGATGGTTGCCTTCCCAAGTTTGAGCTTGATGGTGGTCTTGAGTATAAGCATGGAAATTGTTGGCAAGACATATTTGATGCAATAAATCAGGCGCGTCGCTTGATATACATTACTGGGTGGTCATTGTACCACAAAGTTACTTTGGTTCGGGATAATCATGGTGCATCAAATTGCACATTAGGGGATCTTCTTAAGAACAAGTCACAGGAAGGTGTGAGAGTGCTGCTGCTTGTATGGGATGATCCAACTTCAAGGGATATTATGGGATCTATAAAGGGAGGGCTCATGAAAACAGATGATGAGGAACTTCGACGTTTCTTCAAAAACTCTTCAGTCCAAGTGCTTCTTTGCCCTCGATCTGCTGGAGAGGGTACCTGGGCCAAAAAGCAGGAAGCTGGAATAATCTATACCCATCATCAGAAAACTGTGCTTGTGGATACTGATGCTGGTCATTCTAAGAGAAAGATCATCGCATTTGTTGGAGGTCTCGATTTATGTCGGGGACGTTATGATACTCCAGAGCATCCTATCTTTAGGACGTTACAAACAGTGCACAAGGATGACAATCATAACCCTACTTTCTCGAAGCCTGTTATTGGGTGTCCAAGGGAGCCATGGCATGATTTGCACAGTAAAATTGATGGTCCAGCTGCTTATGACATCCTCACCAACTTTGAGCAGCGTTGGGGGATGGCTTCAAAACCACATGGTCTTCATAAACTGAAGGAACGAGGGCTTCAAAAGCTGAAAGCACGAGGGCTTCATAAACTAGAAACACAAGAAGATGGTGATGTTGATGATGCATTACTTAAGATTGAGAAAATTCCTGAACTTATTGGGATGACAGAGGTGTCTCGCTTGAGTGAGGATGATATAGAAGCTTGGGATGTTCAGGTTTTCCGCTCAATTGATTCTAATTCAGCGAAGGGATTTCCCGAAGACCCCAAAGATGCGACAAGCATGAACCTGGTTTGTGGGAAAAATGTGCTGATAGACATGAGTATACATGCAGCTTATGTGAAAGCAATCCGTGCAGCTCAACATTTTATTTACATAGAGAACCAGTACTTTCTTGGATCATCATATAATTGGAACTCATACAATAATTTAGGTGCAAACAACTTGATACCAATGGAAATTGCTCTGAAAATCGTGAATAAAATCAAAGCAAATGAGAAGTTTTCTGTGTATATTGTTATACCCATGTGGCCAGAAGGTGATCCTACAAGCGTTCCTATTCAACGAATTCTCCTTTGGCAGCATAAAACAATGCAAATGATGTATGAAATGATTTACAAGGCTTTAAAAGATGTTGGACATGAAAACACGTACTGTCCACAAGACTATCTGAATTTCTTTTGCCTGGGGAATCGTGAGAATGGAGAAAACAATTCTGCTGCAAGTAATCTAAGTGAAGCAAACACTCCTTATACACTTTCTCAGAAGAGTCGGCGCTTTATGATCTATGTTCATTCTAAAGGAATGATAGTGGATGATGAATATGTCATAATTGGATCTGCAAATATCAATCAGCGATCCATGGAAGGTCCCCGAGATACTGAAATAGCAATGGGGGCTTATCAGCCTCATCATACTTGGGCAAGAAAACTCTCAAGTCCACATGGAAAGGTATATGGATATAGAATGTCACTGTGGGCAGAGCATATAGGACTTGTTGAAGAATGTTTCAAGCAGCCAGAGAGTCTTGAATGTGTCCAAAGAGTAAGGACTTTGAGTGAGCAGAACTGGAGTCAATACATAGCCGATGAAGTCACAGACATGAAGGGTCACCTCCTGAAATATCCGGTTGAAGTTAGTCCAACTGGAAAGGTGGAGCCTCTTCCGGGGTGTGCAGCATTTCCAGACATTGGTGGCTACATATTGGGGAGTCTCGGCGACATAGGGAAGAGTCTAGGGATCACTAGTATTAGTGGGAGAGGGATATCATTCAGAGCCATGCAAGAAAATCTCACAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006629 GO:0006643 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008289 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009816 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0022626 GO:0030054 GO:0032501 GO:0032502 GO:0032991 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0071704 GO:0071944 GO:0098542 GO:1901981 GO:1902936 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

879

Amino Acids

97.96

Weight (kDa)

6.84

Isoelectric Point (pI)

35.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	38 - 154	9.5e-15	C2 domain
PLDc_2	PF13091	685 - 738	1.5e-06	PLD-like domain
PLDc	PF00614	707 - 732	2.2e-08	Phospholipase D Active site motif
PLD_C	PF12357	779 - 849	7.3e-30	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11830 AT4G11830 AT4G11830 AT4G11830 AT4G11840 AT4G11840 AT4G11850
fragaria_vesca	FvH4_5g01274 FvH4_5g01290 FvH4_5g01290 FvH4_5g01290
malus_domestica	MD04G1069600.v1.1
prunus_persica	Prupe.5G088300_v2.0.a1 Prupe.5G088300_v2.0.a1
pyrus_communis	pycom04g06330
rosa_chinensis	RchiOBHm_Chr4g0413221 RchiOBHm_Chr7g0199651 RchiOBHm_Chr7g0199691 RchiOBHm_Chr7g0199711 RchiOBHm_Chr7g0199731
rosa_laevigata	RLG00000003775 RLG00000003776 RLG00000003777 RLG00000003778 RLG00000003779
rosa_multiflora	Rmu_co8400099.1_g000001 Rmu_sc0002748.1_g000025 Rmu_sc0002748.1_g000027 Rmu_sc0002748.1_g000028 Rmu_sc0009191.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256480 Rroxscaffold_3G00256490 Rroxscaffold_3G00256520
rosa_rugosa	Rorug07G0055600 Rorug07G0055800 Rorug07G0055900
rosa_samantha	Rh7AG180700 Rh7AG181000 Rh7AG181200 Rh7BG183600 Rh7BG183900 Rh7BG184100 Rh7CG190400 Rh7CG190600 Rh7CG190700 Rh7DG183600 Rh7DG183800
rosa_wichuraiana	Rw7G015870 Rw7G015880 Rw7G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	18, 552
AasI	GACNNNNNNGTC	1 cut(s)	1507
Acc16I	TGCGCA	1 cut(s)	54
Acc65I	GGTACC	1 cut(s)	1028
AccB1I	GGYRCC	1 cut(s)	1028
AccB7I	CCANNNNNTGG	1 cut(s)	2525
AccBSI	CCGCTC	1 cut(s)	1560
AccI	GTMKAC	2 cut(s)	524, 1660
AccII	CGCG	2 cut(s)	335, 751
AciI	CCGC	1 cut(s)	1558
AcoI	YGGCCR	2 cut(s)	3, 1865
AcsI	RAATTY	3 cut(s)	1479, 1902, 2008
AcuI	CTGAAG	3 cut(s)	330, 972, 1400
AfaI	GTAC	5 cut(s)	598, 785, 1030, 1724, 1988
AfiI	CCNNNNNNNGG	4 cut(s)	55, 1253, 2501, 2525
AflII	CTTAAG	2 cut(s)	848, 1466
AflIII	ACRYGT	1 cut(s)	1983
AgeI	ACCGGT	1 cut(s)	476
AhlI	ACTAGT	1 cut(s)	2579
AjnI	CCWGG	6 cut(s)	199, 493, 592, 1031, 1623, 2019
AjuI	GAANNNNNNNTTGG	2 cut(s)	1894, 1926
AluBI	AGCT	9 cut(s)	97, 510, 682, 1052, 1307, 1402, 1538, 1670, 1694
AluI	AGCT	9 cut(s)	97, 510, 682, 1052, 1307, 1402, 1538, 1670, 1694
Alw21I	GWGCWC	2 cut(s)	232, 1212
Alw26I	GTCTC	3 cut(s)	1148, 1515, 2552
Alw44I	GTGCAC	1 cut(s)	1208
AlwNI	CAGNNNCTG	2 cut(s)	260, 575
Ama87I	CYCGRG	1 cut(s)	2208
AoxI	GGCC	6 cut(s)	3, 46, 111, 135, 1035, 1865
ApaI	GGGCCC	1 cut(s)	115
ApaLI	GTGCAC	1 cut(s)	1208
ApoI	RAATTY	3 cut(s)	1479, 1902, 2008
AsiGI	ACCGGT	1 cut(s)	476
Asp718I	GGTACC	1 cut(s)	1028
AspLEI	GCGC	4 cut(s)	55, 337, 751, 2112
AspS9I	GGNCC	7 cut(s)	111, 112, 273, 589, 1035, 1301, 2204
AsuC2I	CCSGG	2 cut(s)	302, 2502
AsuHPI	GGTGA	4 cut(s)	1315, 1457, 1886, 2438
AvaI	CYCGRG	1 cut(s)	2208
AvaII	GGWCC	4 cut(s)	273, 589, 1301, 2204
BaeGI	GKGCMC	2 cut(s)	115, 1212
BalI	TGGCCA	2 cut(s)	5, 1867
BanI	GGYRCC	1 cut(s)	1028
BanII	GRGCYC	2 cut(s)	115, 942
BauI	CACGAG	1 cut(s)	1410
BbsI	GAAGAC	2 cut(s)	1361, 1602
Bbv12I	GWGCWC	2 cut(s)	232, 1212
BccI	CCATC	6 cut(s)	653, 680, 1077, 1292, 1342, 1436
BciT130I	CCWGG	6 cut(s)	201, 495, 594, 1033, 1625, 2021
BciVI	GTATCC	2 cut(s)	422, 1087
BclI	TGATCA	1 cut(s)	577
BcnI	CCSGG	2 cut(s)	302, 2502
BcoDI	GTCTC	3 cut(s)	1148, 1515, 2552
BcuI	ACTAGT	1 cut(s)	2579
BfaI	CTAG	4 cut(s)	116, 1427, 2570, 2580
BfmI	CTRYAG	1 cut(s)	261
BfoI	RGCGCY	1 cut(s)	2113
BfrI	CTTAAG	2 cut(s)	848, 1466
BfuI	GTATCC	2 cut(s)	422, 1087
BmcAI	AGTACT	1 cut(s)	1724
Bme1390I	CCNGG	8 cut(s)	201, 302, 495, 594, 1033, 1625, 2021, 2502
Bme18I	GGWCC	4 cut(s)	273, 589, 1301, 2204
BmeT110I	CYCGRG	1 cut(s)	2208
BmgT120I	GGNCC	7 cut(s)	111, 112, 273, 589, 1035, 1301, 2204
BmiI	GGNNCC	9 cut(s)	112, 113, 454, 590, 591, 1030, 1269, 2206, 2493
BmrFI	CCNGG	8 cut(s)	201, 302, 495, 594, 1033, 1625, 2021, 2502
BmrI	ACTGGG	2 cut(s)	410, 780
BmsI	GCATC	7 cut(s)	634, 724, 830, 1090, 1189, 1447, 1597
BmuI	ACTGGG	2 cut(s)	410, 780
BpiI	GAAGAC	2 cut(s)	1361, 1602
BpmI	CTGGAG	4 cut(s)	516, 1041, 1158, 2425
Bpu10I	CCTNAGC	1 cut(s)	43
BpuEI	CTTGAG	3 cut(s)	716, 1537, 2254
BpuMI	CCSGG	2 cut(s)	302, 2502
BsaAI	YACGTR	1 cut(s)	1986
BsaBI	GATNNNNATC	2 cut(s)	576, 1221
BsaI	GGTCTC	1 cut(s)	1148
BsaJI	CCNNGG	9 cut(s)	153, 200, 592, 1032, 1262, 1271, 2020, 2196, 2501
BsaWI	WCCGGW	3 cut(s)	328, 476, 2461
BsaXI	ACNNNNNCTCC	6 cut(s)	214, 244, 607, 637, 1890, 1920
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 1253, 2501, 2525
Bse118I	RCCGGY	1 cut(s)	476
Bse1I	ACTGG	6 cut(s)	225, 416, 775, 1720, 2408, 2485
Bse3DI	GCAATG	2 cut(s)	186, 2232
Bse8I	GATNNNNATC	2 cut(s)	576, 1221
BseBI	CCWGG	6 cut(s)	201, 495, 594, 1033, 1625, 2021
BseDI	CCNNGG	9 cut(s)	153, 200, 592, 1032, 1262, 1271, 2020, 2196, 2501
BseGI	GGATG	9 cut(s)	901, 1180, 1222, 1317, 1353, 1503, 1531, 1549, 2155
BseJI	GATNNNNATC	2 cut(s)	576, 1221
BseLI	CCNNNNNNNGG	4 cut(s)	55, 1253, 2501, 2525
BseMI	GCAATG	2 cut(s)	186, 2232
BseMII	CTCAG	3 cut(s)	57, 404, 2111
BseNI	ACTGG	6 cut(s)	225, 416, 775, 1720, 2408, 2485
BseSI	GKGCMC	2 cut(s)	115, 1212
BsgI	GTGCAG	2 cut(s)	1710, 2529
Bsh1236I	CGCG	2 cut(s)	335, 751
Bsh1285I	CGRYCG	1 cut(s)	333
BshFI	GGCC	6 cut(s)	5, 48, 113, 137, 1037, 1867
BshNI	GGYRCC	1 cut(s)	1028
BshTI	ACCGGT	1 cut(s)	476
BsiEI	CGRYCG	1 cut(s)	333
BsiHKAI	GWGCWC	2 cut(s)	232, 1212
BsiHKCI	CYCGRG	1 cut(s)	2208
BsiSI	CCGG	5 cut(s)	302, 329, 477, 2462, 2501
BslFI	GGGAC	3 cut(s)	575, 1173, 2190
BslI	CCNNNNNNNGG	4 cut(s)	55, 1253, 2501, 2525
BsmAI	GTCTC	3 cut(s)	1148, 1515, 2552
BsmFI	GGGAC	3 cut(s)	575, 1173, 2190
BsnI	GGCC	6 cut(s)	5, 48, 113, 137, 1037, 1867
Bso31I	GGTCTC	1 cut(s)	1148
BsoBI	CYCGRG	1 cut(s)	2208
Bsp120I	GGGCCC	1 cut(s)	111
Bsp1286I	GDGCHC	4 cut(s)	115, 232, 942, 1212
Bsp19I	CCATGG	3 cut(s)	153, 1271, 2196
BspACI	CCGC	1 cut(s)	1558
BspANI	GGCC	6 cut(s)	5, 48, 113, 137, 1037, 1867
BspCNI	CTCAG	3 cut(s)	56, 403, 2110
BspFNI	CGCG	2 cut(s)	335, 751
BspHI	TCATGA	1 cut(s)	942
BspLI	GGNNCC	9 cut(s)	112, 113, 454, 590, 591, 1030, 1269, 2206, 2493
BspT107I	GGYRCC	1 cut(s)	1028
BspTI	CTTAAG	2 cut(s)	848, 1466
BspTNI	GGTCTC	1 cut(s)	1148
BsrBI	CCGCTC	1 cut(s)	1560
BsrDI	GCAATG	2 cut(s)	186, 2232
BsrFI	RCCGGY	1 cut(s)	476
BsrI	ACTGG	6 cut(s)	225, 416, 775, 1720, 2408, 2485
BssAI	RCCGGY	1 cut(s)	476
BssECI	CCNNGG	9 cut(s)	153, 200, 592, 1032, 1262, 1271, 2020, 2196, 2501
BssNAI	GTATAC	2 cut(s)	525, 1661
BssSI	CACGAG	1 cut(s)	1410
BssT1I	CCWWGG	4 cut(s)	153, 1262, 1271, 2196
Bst1107I	GTATAC	2 cut(s)	525, 1661
Bst2BI	CACGAG	1 cut(s)	1410
Bst2UI	CCWGG	6 cut(s)	201, 495, 594, 1033, 1625, 2021
Bst4CI	ACNGT	6 cut(s)	252, 1084, 1207, 1289, 1991, 2310
Bst6I	CTCTTC	5 cut(s)	417, 991, 2096, 2502, 2558
BstAFI	CTTAAG	2 cut(s)	848, 1466
BstAPI	GCANNNNNTGC	2 cut(s)	1282, 1688
BstBAI	YACGTR	1 cut(s)	1986
BstDEI	CTNAG	6 cut(s)	43, 390, 611, 1113, 2066, 2097
BstDSI	CCRYGG	3 cut(s)	153, 1271, 2196
BstEII	GGTNACC	1 cut(s)	2444
BstF5I	GGATG	9 cut(s)	901, 1180, 1222, 1317, 1353, 1503, 1531, 1549, 2155
BstFNI	CGCG	2 cut(s)	335, 751
BstH2I	RGCGCY	1 cut(s)	2113
BstHHI	GCGC	4 cut(s)	55, 337, 751, 2112
BstMAI	GTCTC	3 cut(s)	1148, 1515, 2552
BstMCI	CGRYCG	1 cut(s)	333
BstMWI	GCNNNNNNNGC	6 cut(s)	178, 341, 1282, 1399, 1688, 2231
BstNI	CCWGG	6 cut(s)	201, 495, 594, 1033, 1625, 2021
BstNSI	RCATGY	1 cut(s)	1667
BstPI	GGTNACC	1 cut(s)	2444
BstSCI	CCNGG	8 cut(s)	199, 300, 493, 592, 1031, 1623, 2019, 2500
BstSFI	CTRYAG	1 cut(s)	261
BstSLI	GKGCMC	2 cut(s)	115, 1212
BstUI	CGCG	2 cut(s)	335, 751
BstV2I	GAAGAC	2 cut(s)	1361, 1602
BstX2I	RGATCY	5 cut(s)	386, 571, 841, 923, 2171
BstYI	RGATCY	5 cut(s)	386, 571, 841, 923, 2171
BstZ17I	GTATAC	2 cut(s)	525, 1661
BsuI	GTATCC	2 cut(s)	422, 1087
BsuRI	GGCC	6 cut(s)	5, 48, 113, 137, 1037, 1867
BtgI	CCRYGG	3 cut(s)	153, 1271, 2196
BtgZI	GCGATG	1 cut(s)	1111
BtsCI	GGATG	9 cut(s)	901, 1180, 1222, 1317, 1353, 1503, 1531, 1549, 2155
BtsIMutI	CAGTG	4 cut(s)	232, 248, 1212, 2306
CaiI	CAGNNNCTG	2 cut(s)	260, 575
CciI	TCATGA	1 cut(s)	942
CfoI	GCGC	4 cut(s)	55, 337, 751, 2112
Cfr10I	RCCGGY	1 cut(s)	476
Cfr13I	GGNCC	7 cut(s)	111, 112, 273, 589, 1035, 1301, 2204
CseI	GACGC	1 cut(s)	740
CsiI	ACCWGGT	1 cut(s)	1623
Csp6I	GTAC	5 cut(s)	597, 784, 1029, 1723, 1987
CspAI	ACCGGT	1 cut(s)	476
CviQI	GTAC	5 cut(s)	597, 784, 1029, 1723, 1987
DdeI	CTNAG	6 cut(s)	43, 390, 611, 1113, 2066, 2097
DraI	TTTAAA	2 cut(s)	442, 1962
DrdI	GACNNNNNNGTC	1 cut(s)	1507
DseDI	GACNNNNNNGTC	1 cut(s)	1507
EaeI	YGGCCR	2 cut(s)	3, 1865
Eam1104I	CTCTTC	5 cut(s)	417, 991, 2096, 2502, 2558
EarI	CTCTTC	5 cut(s)	417, 991, 2096, 2502, 2558
Eco130I	CCWWGG	4 cut(s)	153, 1262, 1271, 2196
Eco24I	GRGCYC	2 cut(s)	115, 942
Eco31I	GGTCTC	1 cut(s)	1148
Eco32I	GATATC	1 cut(s)	2601
Eco47I	GGWCC	4 cut(s)	273, 589, 1301, 2204
Eco57I	CTGAAG	3 cut(s)	330, 972, 1400
Eco88I	CYCGRG	1 cut(s)	2208
Eco91I	GGTNACC	1 cut(s)	2444
EcoO109I	RGGNCCY	5 cut(s)	111, 112, 273, 589, 2204
EcoO65I	GGTNACC	1 cut(s)	2444
EcoRI	GAATTC	1 cut(s)	1902
EcoRII	CCWGG	6 cut(s)	199, 493, 592, 1031, 1623, 2019
EcoRV	GATATC	1 cut(s)	2601
EcoT14I	CCWWGG	4 cut(s)	153, 1262, 1271, 2196
EcoT22I	ATGCAT	1 cut(s)	1462
EcoT38I	GRGCYC	2 cut(s)	115, 942
ErhI	CCWWGG	4 cut(s)	153, 1262, 1271, 2196
FalI	AAGNNNNNCTT	4 cut(s)	530, 562, 987, 1019
FaqI	GGGAC	3 cut(s)	575, 1173, 2190
FauNDI	CATATG	1 cut(s)	174
FbaI	TGATCA	1 cut(s)	577
FblI	GTMKAC	2 cut(s)	524, 1660
FokI	GGATG	9 cut(s)	908, 1167, 1229, 1304, 1360, 1510, 1538, 1556, 2162
FriOI	GRGCYC	2 cut(s)	115, 942
FspBI	CTAG	4 cut(s)	116, 1427, 2570, 2580
FspI	TGCGCA	1 cut(s)	54
GlaI	GCGC	4 cut(s)	54, 336, 750, 2111
GsuI	CTGGAG	4 cut(s)	516, 1041, 1158, 2425
HaeII	RGCGCY	1 cut(s)	2113
HaeIII	GGCC	6 cut(s)	5, 48, 113, 137, 1037, 1867
HapII	CCGG	5 cut(s)	302, 329, 477, 2462, 2501
HgaI	GACGC	1 cut(s)	740
HhaI	GCGC	4 cut(s)	55, 337, 751, 2112
Hin6I	GCGC	4 cut(s)	53, 335, 749, 2110
HinP1I	GCGC	4 cut(s)	53, 335, 749, 2110
HincII	GTYRAC	1 cut(s)	543
HindII	GTYRAC	1 cut(s)	543
HindIII	AAGCTT	2 cut(s)	95, 1536
HinfI	GANTC	8 cut(s)	23, 1568, 2026, 2104, 2359, 2407, 2545, 2566
HpaII	CCGG	5 cut(s)	302, 329, 477, 2462, 2501
HphI	GGTGA	4 cut(s)	1315, 1457, 1886, 2438
Hpy166II	GTNNAC	6 cut(s)	525, 543, 1210, 1661, 1994, 2276
Hpy8I	GTNNAC	6 cut(s)	525, 543, 1210, 1661, 1994, 2276
Hpy99I	CGWCG	2 cut(s)	756, 972
HpyAV	CCTTC	9 cut(s)	155, 466, 677, 860, 1375, 1576, 1865, 2195, 2434
HpyCH4III	ACNGT	6 cut(s)	252, 1084, 1207, 1289, 1991, 2310
HpyCH4IV	ACGT	4 cut(s)	970, 1162, 1196, 1985
HpyF10VI	GCNNNNNNNGC	6 cut(s)	178, 341, 1282, 1399, 1688, 2231
HpyF3I	CTNAG	6 cut(s)	43, 390, 611, 1113, 2066, 2097
HpySE526I	ACGT	4 cut(s)	970, 1162, 1196, 1985
HspAI	GCGC	4 cut(s)	53, 335, 749, 2110
KflI	GGGWCCC	1 cut(s)	589
KpnI	GGTACC	1 cut(s)	1032
Ksp22I	TGATCA	1 cut(s)	577
LmnI	GCTCC	3 cut(s)	235, 1267, 2491
LweI	GCATC	7 cut(s)	634, 724, 830, 1090, 1189, 1447, 1597
MabI	ACCWGGT	1 cut(s)	1623
MaeI	CTAG	4 cut(s)	116, 1427, 2570, 2580
MaeII	ACGT	4 cut(s)	970, 1162, 1196, 1985
MaeIII	GTNAC	8 cut(s)	238, 628, 793, 858, 1197, 2304, 2428, 2444
MbiI	CCGCTC	1 cut(s)	1560
MfeI	CAATTG	2 cut(s)	243, 1563
MflI	RGATCY	5 cut(s)	386, 571, 841, 923, 2171
MhlI	GDGCHC	4 cut(s)	115, 232, 942, 1212
MlsI	TGGCCA	2 cut(s)	5, 1867
MluNI	TGGCCA	2 cut(s)	5, 1867
MlyI	GAGTC	5 cut(s)	2113, 2368, 2416, 2554, 2575
MmeI	TCCRAC	4 cut(s)	926, 1117, 1951, 2501
Mox20I	TGGCCA	2 cut(s)	5, 1867
Mph1103I	ATGCAT	1 cut(s)	1462
MscI	TGGCCA	2 cut(s)	5, 1867
MseI	TTAA	5 cut(s)	441, 468, 849, 1467, 1961
MslI	CAYNNNNRTG	3 cut(s)	321, 1215, 2435
Msp20I	TGGCCA	2 cut(s)	5, 1867
MspA1I	CMGCKG	1 cut(s)	1307
MspCI	CTTAAG	2 cut(s)	848, 1466
MspI	CCGG	5 cut(s)	302, 329, 477, 2462, 2501
MspR9I	CCNGG	8 cut(s)	201, 302, 495, 594, 1033, 1625, 2021, 2502
MunI	CAATTG	2 cut(s)	243, 1563
MvaI	CCWGG	6 cut(s)	201, 495, 594, 1033, 1625, 2021
MvnI	CGCG	2 cut(s)	335, 751
MwoI	GCNNNNNNNGC	6 cut(s)	178, 341, 1282, 1399, 1688, 2231
NciI	CCSGG	2 cut(s)	302, 2502
NcoI	CCATGG	3 cut(s)	153, 1271, 2196
NdeI	CATATG	1 cut(s)	174
NlaIV	GGNNCC	9 cut(s)	112, 113, 454, 590, 591, 1030, 1269, 2206, 2493
NmeAIII	GCCGAG	1 cut(s)	2529
NmuCI	GTSAC	4 cut(s)	858, 2304, 2428, 2444
NsbI	TGCGCA	1 cut(s)	54
NsiI	ATGCAT	1 cut(s)	1462
NspI	RCATGY	1 cut(s)	1667
PagI	TCATGA	1 cut(s)	942
PfeI	GAWTC	3 cut(s)	23, 1568, 2026
PflMI	CCANNNNNTGG	1 cut(s)	2525
PinAI	ACCGGT	1 cut(s)	476
PleI	GAGTC	5 cut(s)	2112, 2367, 2415, 2553, 2574
PpsI	GAGTC	5 cut(s)	2112, 2367, 2415, 2553, 2574
Ppu21I	YACGTR	1 cut(s)	1986
PpuMI	RGGWCCY	3 cut(s)	273, 589, 2204
PsiI	TTATAA	2 cut(s)	18, 552
Psp5II	RGGWCCY	3 cut(s)	273, 589, 2204
Psp6I	CCWGG	6 cut(s)	199, 493, 592, 1031, 1623, 2019
PspEI	GGTNACC	1 cut(s)	2444
PspGI	CCWGG	6 cut(s)	199, 493, 592, 1031, 1623, 2019
PspN4I	GGNNCC	9 cut(s)	112, 113, 454, 590, 591, 1030, 1269, 2206, 2493
PspOMI	GGGCCC	1 cut(s)	111
PspPI	GGNCC	7 cut(s)	111, 112, 273, 589, 1035, 1301, 2204
PspPPI	RGGWCCY	3 cut(s)	273, 589, 2204
PstNI	CAGNNNCTG	2 cut(s)	260, 575
PsuI	RGATCY	5 cut(s)	386, 571, 841, 923, 2171
PvuII	CAGCTG	1 cut(s)	1307
RsaI	GTAC	5 cut(s)	598, 785, 1030, 1724, 1988
RsaNI	GTAC	5 cut(s)	597, 784, 1029, 1723, 1987
RseI	CAYNNNNRTG	3 cut(s)	321, 1215, 2435
SaqAI	TTAA	5 cut(s)	441, 468, 849, 1467, 1961
Sau96I	GGNCC	7 cut(s)	111, 112, 273, 589, 1035, 1301, 2204
ScaI	AGTACT	1 cut(s)	1724
SchI	GAGTC	5 cut(s)	2113, 2368, 2416, 2554, 2575
ScrFI	CCNGG	8 cut(s)	201, 302, 495, 594, 1033, 1625, 2021, 2502
SduI	GDGCHC	4 cut(s)	115, 232, 942, 1212
SexAI	ACCWGGT	1 cut(s)	1623
SfaNI	GCATC	7 cut(s)	634, 724, 830, 1090, 1189, 1447, 1597
SfcI	CTRYAG	1 cut(s)	261
SinI	GGWCC	4 cut(s)	273, 589, 1301, 2204
SmiMI	CAYNNNNRTG	3 cut(s)	321, 1215, 2435
SmlI	CTYRAG	5 cut(s)	695, 848, 1466, 1516, 2269
SmoI	CTYRAG	5 cut(s)	695, 848, 1466, 1516, 2269
SpeI	ACTAGT	1 cut(s)	2579
SsiI	CCGC	1 cut(s)	1558
SspMI	CTAG	4 cut(s)	116, 1427, 2570, 2580
StyD4I	CCNGG	8 cut(s)	199, 300, 493, 592, 1031, 1623, 2019, 2500
StyI	CCWWGG	4 cut(s)	153, 1262, 1271, 2196
TaaI	ACNGT	6 cut(s)	252, 1084, 1207, 1289, 1991, 2310
TaiI	ACGT	4 cut(s)	973, 1165, 1199, 1988
TaqI	TCGA	4 cut(s)	967, 1012, 1146, 1241
TatI	WGTACW	1 cut(s)	1722
TfiI	GAWTC	3 cut(s)	23, 1568, 2026
Tru1I	TTAA	5 cut(s)	441, 468, 849, 1467, 1961
Tru9I	TTAA	5 cut(s)	441, 468, 849, 1467, 1961
TscAI	CASTG	4 cut(s)	232, 255, 1212, 2313
TseFI	GTSAC	4 cut(s)	858, 2304, 2428, 2444
Tsp45I	GTSAC	4 cut(s)	858, 2304, 2428, 2444
TspGWI	ACGGA	1 cut(s)	1676
TspRI	CASTG	4 cut(s)	232, 255, 1212, 2313
Van91I	CCANNNNNTGG	1 cut(s)	2525
Vha464I	CTTAAG	2 cut(s)	848, 1466
VneI	GTGCAC	1 cut(s)	1208
VpaK11BI	GGWCC	4 cut(s)	273, 589, 1301, 2204
XapI	RAATTY	3 cut(s)	1479, 1902, 2008
XceI	RCATGY	1 cut(s)	1667
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1269, 1727
XmiI	GTMKAC	2 cut(s)	524, 1660
XspI	CTAG	4 cut(s)	116, 1427, 2570, 2580
ZrmI	AGTACT	1 cut(s)	1724
Zsp2I	ATGCAT	1 cut(s)	1462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.