Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001557

Physical Location & Seq

Genomic Coordinates Forward (+)

50874912 .. 50880862

Gene Structure 5951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2772 bp

ATGGCTAATCTTGGTTATAAGGAATCGTTGTCATTTGGAGGCTCTGGCCATGCGCAGGGTCAACAAGTTGTGCCATTTGAGAGTGGAGCCCTGAAGCTTTTGCTACATGGGTCCCTAGTTATATGTGTCAAGGAGGCCAAGAATCTTCCTGATATGGATGGTTTGCATAAGCATATGGGGCGTGTGATTTCCAAGTTGCCTGGCAGAAGTAGCAAAAAGACAACCAGTGCTCCATATGTTACAATTGCACTATCAGGTGCTGTAGTTGGGAGGACCTTTGTGATTAGTAATAGTCAGAACCCGGTCTGGAATCAACATTTTGATGTTCCAGTTGCGCACTATGCTTCTGAAGTGCATTTTGTTGTGAAGCATAGTGATGTGGTGGGATCCCAGACTATAGGTTCTGTGGGAATCCCAGTTGAAGAATTATACTCTGGCGTAAAAATTGAGGGAACCTTCCCTATCCTTAACTCTACCGGTCATATCTGTATGCCTGGAGTTGTTTTGAGCTTATCAATTCAGTATACCTCAATTGAAAAGATGACCTTTTATAATCGTGGAGTAGGTTCAGATTCTGATCATCAAGGGGTCCCTGGTACTTACTTTCCTCTTAGGAAAGGCGGTAAAGTAACTCTGTATCAAGATGCCCATGTTCCTGATGGTTGCCTTCCCAATTTTGAGCTTGATGGCGGTCTTGAGTATGAGCATGGAAATTGTTGGCAAGACATATTTGATGCAATAAGTAAGGCCCGTCACTTGATATACATTACCGGGTGGTCATTGTGCCACAAAGTTACATTGGTTCGGGATAATCATGGTGCATCAGATTGCACATTAGGGGATCTTCTTAAGACCAAGTCACAGGAAGGTGTGAGAGTGCTGCTTCTTGTTTGGGATGATCCAACTTCCAGGAATATCATGGGATCTATAAAGGGAGGGCTCATGCATACCAATGATGAGGAACTTCGGCGTTTCTTCAAAAACTCTTCAGTCCAAGTGCTTCTTTGCCCTCGATCTGCTGGAGAGGGTACCTGGGCCAAAAAGCAGGAAGCGGGAATAATCTATACCCATCATCAGAAAACTGTGCTTGTGGATGCTGATGGTGGTCAATATAAAAGAAAGATCATTGCATTTGTTGGAGGTCTTGATTTATGTCTGGGACGTTATGATACTCCAGAGCATCCTATCTTTAGGACATTACAAACAGTGCACAAGGATGACAATCATAACCCCACTTTCTCGAAACCCGTTATTGGGTGTCCAAGGCAGCCATGGCATGATTTGCACAGTAAAATTGATGGTCCAGCTGCTTATGACATCCTCACCAATTTTGAGCAGCGTTGGGGGATGGCTTCAAAACCACATGGTCTTCACAAACTAAAAGAACGAGGGCTTCAAAAACTGAAAGTACGAGGGCTTCATAAACTAGAAACACAAGATGATGGTGATGATGATGCATTGCTTAAGACTGAGAAAATTCCAGAACTTATTGGGATGACCGAAGTTTCTTGCTTGAGTGAGGATGATCAAGAAGCTTGGGATGTTCAGGTAGTCCGTTCAATTGATTCAAATTCAGCAAAAGGATTTCCTGAAGACCCCAAAGATGCAACTAGTGTGAACCTGGTTTGTGGGAAAAATGTGCTGATAGACATGAGTATACATGCAGCATATGTGAAAGCAATACGTGCAGCTCAACATTTTATTTACATAGAGAACCAGTACTTTCTTGGATCATCATATAATTGGAACTTATACAATGATTTAGGTGCAAACAATCTGATACCAATGGAAATTGCTCTGAAAATCGTAAATAAAATCAAAGCAAATGAGAGGTTTTCTGTGTATATTATTATCCCCATGTGGCCAGAAGGTGATCCTACAAGTGTTCCTCTACAACGAATTCTCCTTTGGCAGCATAAAACAATGCAAATGATGTATGAAATGATTTACAAGGCTCTAAAGGAGGTTGGACTTGAAAACACGTACTGTCCACAAGACTATTTGAATTTCTTTTGCCTTGGGAATCGTGAGACACTAAGTGGAGAAGACAATTCTGCTCCAAATAATTTAAGTGAAGCAAACATTCCTCAAGCACTCACCTTGAAGAATCGGCGGTTTATGATTTATGTTCATTCTAAAGGAATGATAGTGGACGATGAATATGTTATACTAGGATCTGCAAATATCAATCAGCGATCCATGGAAGGTCCCCGAGATACTGAAATAGCAATGGGGGCTTTTCAGCCTCATCATACCTGGACAAGAAAACTCTCTAGTCCACATGGAAAGCAGCAGCAAGCAATAGCTGCGAGATTGCTTTCTCCTTTACCGATGCTTGAGATGTCTGAAAATTATCTTGTATATGGATATAGAATGTCAATTACTGTAATGCACCTAGCTCCTCAGATTACAGACTTGGATGTATATGGATATAGAATGTCACTGTGGGCAGAGCATATAGGACTTGTCGAAGAATGTTTCAAGCAGCCAGAGAGTCTTGAATGTGTCCGAAGGGTAAGGTCTTTGAGTGAGCAGAACTGGAGTCAATACGTAGCCGATGAAGTCACAGAAATGAAGGGTCACCTCCTCAAGTATCCGGTTGAAGTTGGTCCAACTGGCGAGGTGGAGCCTCTTCCAGGCTGTGCAGCATTTCCAGATGTCGGTGGCTACATACTGGGGAGTCTCGGCGACATAGGGAAGAGTCTAGGGATCACTAGTATTAATGGAAGGGGAATATCATTCAGGGCCATGCAAGAAAATCTCACCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006629 GO:0006643 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008289 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009816 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0022626 GO:0030054 GO:0032501 GO:0032502 GO:0032991 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0071704 GO:0071944 GO:0098542 GO:1901981 GO:1902936 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

923

Amino Acids

102.79

Weight (kDa)

6.27

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	37 - 154	3.3e-16	C2 domain
PLDc_2	PF13091	623 - 738	3.1e-06	PLD-like domain
PLDc	PF00614	708 - 733	9e-08	Phospholipase D Active site motif
PLD_C	PF12357	824 - 894	3.7e-30	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0001557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11830 AT4G11830 AT4G11830 AT4G11830 AT4G11840 AT4G11840 AT4G11850
fragaria_vesca	FvH4_5g01274 FvH4_5g01290 FvH4_5g01290 FvH4_5g01290
malus_domestica	MD04G1069600.v1.1
prunus_persica	Prupe.5G088300_v2.0.a1 Prupe.5G088300_v2.0.a1
pyrus_communis	pycom04g06330
rosa_chinensis	RchiOBHm_Chr4g0413221 RchiOBHm_Chr7g0199651 RchiOBHm_Chr7g0199691 RchiOBHm_Chr7g0199711 RchiOBHm_Chr7g0199731
rosa_laevigata	RLG00000003775 RLG00000003776 RLG00000003777 RLG00000003778 RLG00000003779
rosa_multiflora	Rmu_co8400099.1_g000001 Rmu_sc0002748.1_g000025 Rmu_sc0002748.1_g000027 Rmu_sc0002748.1_g000028 Rmu_sc0009191.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256480 Rroxscaffold_3G00256490 Rroxscaffold_3G00256520
rosa_rugosa	Rorug07G0055600 Rorug07G0055800 Rorug07G0055900
rosa_samantha	Rh7AG180700 Rh7AG181000 Rh7AG181200 Rh7BG183600 Rh7BG183900 Rh7BG184100 Rh7CG190400 Rh7CG190600 Rh7CG190700 Rh7DG183600 Rh7DG183800
rosa_wichuraiana	Rw7G015870 Rw7G015880 Rw7G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	18, 552
Acc16I	TGCGCA	2 cut(s)	54, 336
Acc65I	GGTACC	1 cut(s)	1028
AccB1I	GGYRCC	1 cut(s)	1028
AccI	GTMKAC	2 cut(s)	524, 1657
AciI	CCGC	4 cut(s)	621, 690, 1052, 2113
AcoI	YGGCCR	2 cut(s)	46, 1862
AcsI	RAATTY	4 cut(s)	1476, 1570, 1899, 2005
AcuI	CTGAAG	4 cut(s)	113, 369, 972, 1611
AdeI	CACNNNGTG	1 cut(s)	2039
AfaI	GTAC	5 cut(s)	598, 1030, 1410, 1721, 1985
AfiI	CCNNNNNNNGG	5 cut(s)	55, 1253, 1254, 2636, 2660
AflII	CTTAAG	2 cut(s)	848, 1463
AflIII	ACRYGT	1 cut(s)	1980
AgeI	ACCGGT	1 cut(s)	476
AhlI	ACTAGT	2 cut(s)	1610, 2714
AjnI	CCWGG	8 cut(s)	199, 493, 592, 908, 1031, 1620, 2255, 2635
AjuI	GAANNNNNNNTTGG	2 cut(s)	1891, 1923
AluBI	AGCT	8 cut(s)	97, 510, 682, 1307, 1535, 1691, 2306, 2399
AluI	AGCT	8 cut(s)	97, 510, 682, 1307, 1535, 1691, 2306, 2399
Alw21I	GWGCWC	2 cut(s)	232, 1212
Alw26I	GTCTC	2 cut(s)	2024, 2687
Alw44I	GTGCAC	1 cut(s)	1208
AlwNI	CAGNNNCTG	2 cut(s)	260, 575
Ama87I	CYCGRG	1 cut(s)	2211
AoxI	GGCC	6 cut(s)	46, 135, 747, 1035, 1862, 2745
ApaLI	GTGCAC	1 cut(s)	1208
ApoI	RAATTY	4 cut(s)	1476, 1570, 1899, 2005
AseI	ATTAAT	1 cut(s)	2721
AsiGI	ACCGGT	1 cut(s)	476
Asp718I	GGTACC	1 cut(s)	1028
AspLEI	GCGC	2 cut(s)	55, 337
AspS9I	GGNCC	9 cut(s)	111, 273, 589, 748, 1035, 1301, 2207, 2609, 2745
AsuC2I	CCSGG	2 cut(s)	302, 772
AsuHPI	GGTGA	6 cut(s)	1315, 1457, 1883, 2089, 2573, 2755
AvaI	CYCGRG	1 cut(s)	2211
AvaII	GGWCC	6 cut(s)	111, 273, 589, 1301, 2207, 2609
BaeGI	GKGCMC	1 cut(s)	1212
BalI	TGGCCA	2 cut(s)	48, 1864
BamHI	GGATCC	1 cut(s)	386
BanI	GGYRCC	1 cut(s)	1028
BanII	GRGCYC	2 cut(s)	91, 942
BarI	GAAGNNNNNNTAC	2 cut(s)	1401, 1433
BbsI	GAAGAC	3 cut(s)	1361, 1599, 2052
Bbv12I	GWGCWC	2 cut(s)	232, 1212
BccI	CCATC	8 cut(s)	152, 653, 680, 1077, 1094, 1292, 1342, 1436
BciT130I	CCWGG	8 cut(s)	201, 495, 594, 910, 1033, 1622, 2257, 2637
BciVI	GTATCC	1 cut(s)	2604
BclI	TGATCA	2 cut(s)	577, 1525
BcnI	CCSGG	2 cut(s)	302, 772
BcoDI	GTCTC	2 cut(s)	2024, 2687
BcuI	ACTAGT	2 cut(s)	1610, 2714
BfaI	CTAG	8 cut(s)	116, 1427, 1611, 2171, 2274, 2396, 2705, 2715
BfmI	CTRYAG	2 cut(s)	261, 396
BfrI	CTTAAG	2 cut(s)	848, 1463
BfuI	GTATCC	1 cut(s)	2604
BmcAI	AGTACT	1 cut(s)	1721
Bme18I	GGWCC	6 cut(s)	111, 273, 589, 1301, 2207, 2609
BmeT110I	CYCGRG	1 cut(s)	2211
BmgT120I	GGNCC	9 cut(s)	111, 273, 589, 748, 1035, 1301, 2207, 2609, 2745
BmrI	ACTGGG	2 cut(s)	410, 2684
BmsI	GCATC	8 cut(s)	634, 724, 830, 1084, 1189, 1444, 1594, 2322
BmuI	ACTGGG	2 cut(s)	410, 2684
BpiI	GAAGAC	3 cut(s)	1361, 1599, 2052
BpmI	CTGGAG	4 cut(s)	516, 1041, 1158, 2560
BpuEI	CTTGAG	5 cut(s)	716, 1534, 2073, 2357, 2573
BpuMI	CCSGG	2 cut(s)	302, 772
BsaAI	YACGTR	3 cut(s)	1685, 1983, 2551
BsaBI	GATNNNNATC	2 cut(s)	576, 1221
BsaJI	CCNNGG	6 cut(s)	592, 1032, 1262, 1271, 2017, 2199
BsaWI	WCCGGW	2 cut(s)	476, 2596
BsaXI	ACNNNNNCTCC	4 cut(s)	214, 244, 1887, 1917
Bsc4I	CCNNNNNNNGG	5 cut(s)	55, 1253, 1254, 2636, 2660
Bse118I	RCCGGY	1 cut(s)	476
Bse1I	ACTGG	7 cut(s)	225, 329, 416, 1717, 2543, 2620, 2679
Bse3DI	GCAATG	3 cut(s)	1125, 1457, 2235
Bse8I	GATNNNNATC	2 cut(s)	576, 1221
BseBI	CCWGG	8 cut(s)	201, 495, 594, 910, 1033, 1622, 2257, 2637
BseDI	CCNNGG	6 cut(s)	592, 1032, 1262, 1271, 2017, 2199
BseJI	GATNNNNATC	2 cut(s)	576, 1221
BseLI	CCNNNNNNNGG	5 cut(s)	55, 1253, 1254, 2636, 2660
BseMI	GCAATG	3 cut(s)	1125, 1457, 2235
BseMII	CTCAG	2 cut(s)	1461, 2417
BseNI	ACTGG	7 cut(s)	225, 329, 416, 1717, 2543, 2620, 2679
BseRI	GAGGAG	2 cut(s)	2391, 2576
BseSI	GKGCMC	1 cut(s)	1212
BsgI	GTGCAG	2 cut(s)	1707, 2664
BshFI	GGCC	6 cut(s)	48, 137, 749, 1037, 1864, 2747
BshNI	GGYRCC	1 cut(s)	1028
BshTI	ACCGGT	1 cut(s)	476
BsiHKAI	GWGCWC	2 cut(s)	232, 1212
BsiHKCI	CYCGRG	1 cut(s)	2211
BsiSI	CCGG	4 cut(s)	302, 477, 771, 2597
BslFI	GGGAC	4 cut(s)	97, 575, 1173, 2193
BslI	CCNNNNNNNGG	5 cut(s)	55, 1253, 1254, 2636, 2660
BsmAI	GTCTC	2 cut(s)	2024, 2687
BsmFI	GGGAC	4 cut(s)	97, 575, 1173, 2193
BsnI	GGCC	6 cut(s)	48, 137, 749, 1037, 1864, 2747
BsoBI	CYCGRG	1 cut(s)	2211
Bsp1286I	GDGCHC	4 cut(s)	91, 232, 942, 1212
Bsp19I	CCATGG	2 cut(s)	1271, 2199
BspACI	CCGC	4 cut(s)	621, 690, 1052, 2113
BspANI	GGCC	6 cut(s)	48, 137, 749, 1037, 1864, 2747
BspCNI	CTCAG	2 cut(s)	1462, 2416
BspT107I	GGYRCC	1 cut(s)	1028
BspTI	CTTAAG	2 cut(s)	848, 1463
BsrDI	GCAATG	3 cut(s)	1125, 1457, 2235
BsrFI	RCCGGY	1 cut(s)	476
BsrI	ACTGG	7 cut(s)	225, 329, 416, 1717, 2543, 2620, 2679
BssAI	RCCGGY	1 cut(s)	476
BssECI	CCNNGG	6 cut(s)	592, 1032, 1262, 1271, 2017, 2199
BssNAI	GTATAC	2 cut(s)	525, 1658
BssT1I	CCWWGG	4 cut(s)	1262, 1271, 2017, 2199
Bst1107I	GTATAC	2 cut(s)	525, 1658
Bst2UI	CCWGG	8 cut(s)	201, 495, 594, 910, 1033, 1622, 2257, 2637
Bst4CI	ACNGT	6 cut(s)	1084, 1207, 1289, 1988, 2386, 2445
Bst6I	CTCTTC	3 cut(s)	991, 2637, 2693
BstAFI	CTTAAG	2 cut(s)	848, 1463
BstAPI	GCANNNNNTGC	3 cut(s)	1282, 1685, 2306
BstBAI	YACGTR	3 cut(s)	1685, 1983, 2551
BstC8I	GCNNGC	1 cut(s)	2298
BstDEI	CTNAG	4 cut(s)	611, 1470, 2036, 2403
BstDSI	CCRYGG	2 cut(s)	1271, 2199
BstEII	GGTNACC	1 cut(s)	2579
BstENI	CCTNNNNNAGG	1 cut(s)	2634
BstHHI	GCGC	2 cut(s)	55, 337
BstMAI	GTCTC	2 cut(s)	2024, 2687
BstMWI	GCNNNNNNNGC	8 cut(s)	178, 210, 341, 1273, 1282, 1685, 2234, 2306
BstNI	CCWGG	8 cut(s)	201, 495, 594, 910, 1033, 1622, 2257, 2637
BstNSI	RCATGY	1 cut(s)	1664
BstPI	GGTNACC	1 cut(s)	2579
BstSFI	CTRYAG	2 cut(s)	261, 396
BstSLI	GKGCMC	1 cut(s)	1212
BstSNI	TACGTA	1 cut(s)	2551
BstV2I	GAAGAC	3 cut(s)	1361, 1599, 2052
BstX2I	RGATCY	4 cut(s)	386, 841, 923, 2174
BstYI	RGATCY	4 cut(s)	386, 841, 923, 2174
BstZ17I	GTATAC	2 cut(s)	525, 1658
BsuI	GTATCC	1 cut(s)	2604
BsuRI	GGCC	6 cut(s)	48, 137, 749, 1037, 1864, 2747
BtgI	CCRYGG	2 cut(s)	1271, 2199
BtsIMutI	CAGTG	3 cut(s)	232, 1212, 2441
Cac8I	GCNNGC	1 cut(s)	2298
CaiI	CAGNNNCTG	2 cut(s)	260, 575
CfoI	GCGC	2 cut(s)	55, 337
Cfr10I	RCCGGY	1 cut(s)	476
Cfr13I	GGNCC	9 cut(s)	111, 273, 589, 748, 1035, 1301, 2207, 2609, 2745
CsiI	ACCWGGT	1 cut(s)	1620
Csp6I	GTAC	5 cut(s)	597, 1029, 1409, 1720, 1984
CspAI	ACCGGT	1 cut(s)	476
CviQI	GTAC	5 cut(s)	597, 1029, 1409, 1720, 1984
DdeI	CTNAG	4 cut(s)	611, 1470, 2036, 2403
DraIII	CACNNNGTG	1 cut(s)	2039
EaeI	YGGCCR	2 cut(s)	46, 1862
Eam1104I	CTCTTC	3 cut(s)	991, 2637, 2693
EarI	CTCTTC	3 cut(s)	991, 2637, 2693
Eco105I	TACGTA	1 cut(s)	2551
Eco130I	CCWWGG	4 cut(s)	1262, 1271, 2017, 2199
Eco24I	GRGCYC	2 cut(s)	91, 942
Eco47I	GGWCC	6 cut(s)	111, 273, 589, 1301, 2207, 2609
Eco57I	CTGAAG	4 cut(s)	113, 369, 972, 1611
Eco88I	CYCGRG	1 cut(s)	2211
Eco91I	GGTNACC	1 cut(s)	2579
EcoNI	CCTNNNNNAGG	1 cut(s)	2634
EcoO109I	RGGNCCY	4 cut(s)	111, 273, 589, 2207
EcoO65I	GGTNACC	1 cut(s)	2579
EcoRI	GAATTC	1 cut(s)	1899
EcoRII	CCWGG	8 cut(s)	199, 493, 592, 908, 1031, 1620, 2255, 2635
EcoT14I	CCWWGG	4 cut(s)	1262, 1271, 2017, 2199
EcoT22I	ATGCAT	2 cut(s)	948, 1459
EcoT38I	GRGCYC	2 cut(s)	91, 942
ErhI	CCWWGG	4 cut(s)	1262, 1271, 2017, 2199
FalI	AAGNNNNNCTT	4 cut(s)	530, 562, 987, 1019
FaqI	GGGAC	4 cut(s)	97, 575, 1173, 2193
FauI	CCCGC	1 cut(s)	1045
FauNDI	CATATG	3 cut(s)	174, 235, 1669
FbaI	TGATCA	2 cut(s)	577, 1525
FblI	GTMKAC	2 cut(s)	524, 1657
FriOI	GRGCYC	2 cut(s)	91, 942
FspBI	CTAG	8 cut(s)	116, 1427, 1611, 2171, 2274, 2396, 2705, 2715
FspI	TGCGCA	2 cut(s)	54, 336
GlaI	GCGC	2 cut(s)	54, 336
GsuI	CTGGAG	4 cut(s)	516, 1041, 1158, 2560
HaeIII	GGCC	6 cut(s)	48, 137, 749, 1037, 1864, 2747
HapII	CCGG	4 cut(s)	302, 477, 771, 2597
HhaI	GCGC	2 cut(s)	55, 337
Hin6I	GCGC	2 cut(s)	53, 335
HinP1I	GCGC	2 cut(s)	53, 335
HincII	GTYRAC	1 cut(s)	62
HindII	GTYRAC	1 cut(s)	62
HindIII	AAGCTT	2 cut(s)	95, 1533
HpaII	CCGG	4 cut(s)	302, 477, 771, 2597
HphI	GGTGA	6 cut(s)	1315, 1457, 1883, 2089, 2573, 2755
Hpy166II	GTNNAC	8 cut(s)	62, 525, 1210, 1618, 1658, 1991, 2152, 2279
Hpy8I	GTNNAC	8 cut(s)	62, 525, 1210, 1618, 1658, 1991, 2152, 2279
HpyAV	CCTTC	8 cut(s)	466, 677, 860, 1862, 2198, 2505, 2569, 2721
HpyCH4III	ACNGT	6 cut(s)	1084, 1207, 1289, 1988, 2386, 2445
HpyCH4IV	ACGT	4 cut(s)	1162, 1684, 1982, 2550
HpyF10VI	GCNNNNNNNGC	8 cut(s)	178, 210, 341, 1273, 1282, 1685, 2234, 2306
HpyF3I	CTNAG	4 cut(s)	611, 1470, 2036, 2403
HpySE526I	ACGT	4 cut(s)	1162, 1684, 1982, 2550
HspAI	GCGC	2 cut(s)	53, 335
KflI	GGGWCCC	2 cut(s)	111, 589
KpnI	GGTACC	1 cut(s)	1032
Ksp22I	TGATCA	2 cut(s)	577, 1525
LmnI	GCTCC	5 cut(s)	86, 235, 2062, 2404, 2626
LweI	GCATC	8 cut(s)	634, 724, 830, 1084, 1189, 1444, 1594, 2322
MabI	ACCWGGT	1 cut(s)	1620
MaeI	CTAG	8 cut(s)	116, 1427, 1611, 2171, 2274, 2396, 2705, 2715
MaeII	ACGT	4 cut(s)	1162, 1684, 1982, 2550
MaeIII	GTNAC	8 cut(s)	238, 628, 752, 793, 858, 2439, 2563, 2579
MfeI	CAATTG	3 cut(s)	243, 531, 1560
MflI	RGATCY	4 cut(s)	386, 841, 923, 2174
MhlI	GDGCHC	4 cut(s)	91, 232, 942, 1212
MlsI	TGGCCA	2 cut(s)	48, 1864
MluNI	TGGCCA	2 cut(s)	48, 1864
MlyI	GAGTC	4 cut(s)	2503, 2551, 2689, 2710
MmeI	TCCRAC	4 cut(s)	926, 1117, 1948, 2636
Mox20I	TGGCCA	2 cut(s)	48, 1864
Mph1103I	ATGCAT	2 cut(s)	948, 1459
MscI	TGGCCA	2 cut(s)	48, 1864
MseI	TTAA	5 cut(s)	468, 849, 1464, 2069, 2721
MslI	CAYNNNNRTG	5 cut(s)	321, 375, 951, 1215, 2570
Msp20I	TGGCCA	2 cut(s)	48, 1864
MspA1I	CMGCKG	1 cut(s)	1307
MspCI	CTTAAG	2 cut(s)	848, 1463
MspI	CCGG	4 cut(s)	302, 477, 771, 2597
MunI	CAATTG	3 cut(s)	243, 531, 1560
MvaI	CCWGG	8 cut(s)	201, 495, 594, 910, 1033, 1622, 2257, 2637
MwoI	GCNNNNNNNGC	8 cut(s)	178, 210, 341, 1273, 1282, 1685, 2234, 2306
NciI	CCSGG	2 cut(s)	302, 772
NcoI	CCATGG	2 cut(s)	1271, 2199
NdeI	CATATG	3 cut(s)	174, 235, 1669
NmeAIII	GCCGAG	1 cut(s)	2664
NmuCI	GTSAC	5 cut(s)	752, 858, 2439, 2563, 2579
NsbI	TGCGCA	2 cut(s)	54, 336
NsiI	ATGCAT	2 cut(s)	948, 1459
NspI	RCATGY	1 cut(s)	1664
PfeI	GAWTC	8 cut(s)	23, 142, 310, 411, 572, 1565, 2023, 2107
PflFI	GACNNNGTC	1 cut(s)	856
PfoI	TCCNGGA	1 cut(s)	908
PinAI	ACCGGT	1 cut(s)	476
PleI	GAGTC	4 cut(s)	2502, 2550, 2688, 2709
PpsI	GAGTC	4 cut(s)	2502, 2550, 2688, 2709
Ppu21I	YACGTR	3 cut(s)	1685, 1983, 2551
PpuMI	RGGWCCY	4 cut(s)	111, 273, 589, 2207
PshBI	ATTAAT	1 cut(s)	2721
PsiI	TTATAA	2 cut(s)	18, 552
Psp5II	RGGWCCY	4 cut(s)	111, 273, 589, 2207
Psp6I	CCWGG	8 cut(s)	199, 493, 592, 908, 1031, 1620, 2255, 2635
PspEI	GGTNACC	1 cut(s)	2579
PspGI	CCWGG	8 cut(s)	199, 493, 592, 908, 1031, 1620, 2255, 2635
PspPI	GGNCC	9 cut(s)	111, 273, 589, 748, 1035, 1301, 2207, 2609, 2745
PspPPI	RGGWCCY	4 cut(s)	111, 273, 589, 2207
PstNI	CAGNNNCTG	2 cut(s)	260, 575
PsuI	RGATCY	4 cut(s)	386, 841, 923, 2174
PsyI	GACNNNGTC	1 cut(s)	856
PvuII	CAGCTG	1 cut(s)	1307
RsaI	GTAC	5 cut(s)	598, 1030, 1410, 1721, 1985
RsaNI	GTAC	5 cut(s)	597, 1029, 1409, 1720, 1984
RseI	CAYNNNNRTG	5 cut(s)	321, 375, 951, 1215, 2570
SaqAI	TTAA	5 cut(s)	468, 849, 1464, 2069, 2721
Sau96I	GGNCC	9 cut(s)	111, 273, 589, 748, 1035, 1301, 2207, 2609, 2745
ScaI	AGTACT	1 cut(s)	1721
SchI	GAGTC	4 cut(s)	2503, 2551, 2689, 2710
SduI	GDGCHC	4 cut(s)	91, 232, 942, 1212
SexAI	ACCWGGT	1 cut(s)	1620
SfaNI	GCATC	8 cut(s)	634, 724, 830, 1084, 1189, 1444, 1594, 2322
SfcI	CTRYAG	2 cut(s)	261, 396
SinI	GGWCC	6 cut(s)	111, 273, 589, 1301, 2207, 2609
SmiMI	CAYNNNNRTG	5 cut(s)	321, 375, 951, 1215, 2570
SmlI	CTYRAG	7 cut(s)	695, 848, 1463, 1513, 2088, 2336, 2588
SmoI	CTYRAG	7 cut(s)	695, 848, 1463, 1513, 2088, 2336, 2588
SnaBI	TACGTA	1 cut(s)	2551
SpeI	ACTAGT	2 cut(s)	1610, 2714
SsiI	CCGC	4 cut(s)	621, 690, 1052, 2113
SspMI	CTAG	8 cut(s)	116, 1427, 1611, 2171, 2274, 2396, 2705, 2715
StyI	CCWWGG	4 cut(s)	1262, 1271, 2017, 2199
TaaI	ACNGT	6 cut(s)	1084, 1207, 1289, 1988, 2386, 2445
TaiI	ACGT	4 cut(s)	1165, 1687, 1985, 2553
TaqI	TCGA	3 cut(s)	1012, 1241, 2469
TaqII	GACCGA	1 cut(s)	1514
TatI	WGTACW	1 cut(s)	1719
TfiI	GAWTC	8 cut(s)	23, 142, 310, 411, 572, 1565, 2023, 2107
Tru1I	TTAA	5 cut(s)	468, 849, 1464, 2069, 2721
Tru9I	TTAA	5 cut(s)	468, 849, 1464, 2069, 2721
TscAI	CASTG	3 cut(s)	232, 1212, 2448
TseFI	GTSAC	5 cut(s)	752, 858, 2439, 2563, 2579
Tsp45I	GTSAC	5 cut(s)	752, 858, 2439, 2563, 2579
TspDTI	ATGAA	6 cut(s)	1409, 1953, 2120, 2172, 2574, 2588
TspGWI	ACGGA	1 cut(s)	1544
TspRI	CASTG	3 cut(s)	232, 1212, 2448
Tth111I	GACNNNGTC	1 cut(s)	856
Vha464I	CTTAAG	2 cut(s)	848, 1463
VneI	GTGCAC	1 cut(s)	1208
VpaK11BI	GGWCC	6 cut(s)	111, 273, 589, 1301, 2207, 2609
VspI	ATTAAT	1 cut(s)	2721
XagI	CCTNNNNNAGG	1 cut(s)	2634
XapI	RAATTY	4 cut(s)	1476, 1570, 1899, 2005
XceI	RCATGY	1 cut(s)	1664
XcmI	CCANNNNNNNNNTGG	4 cut(s)	656, 916, 1269, 1724
XmiI	GTMKAC	2 cut(s)	524, 1657
XspI	CTAG	8 cut(s)	116, 1427, 1611, 2171, 2274, 2396, 2705, 2715
ZrmI	AGTACT	1 cut(s)	1721
Zsp2I	ATGCAT	2 cut(s)	948, 1459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.