Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001557

Physical Location & Seq

Genomic Coordinates Forward (+)

52513906 .. 52519044

Gene Structure 5139 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003775

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2604 bp

ATGGCTAATCCTACTTACCAGGAATCCTTGTCATTTGGAGGCCCAGACCATCCTCAGGGTCAAGAAGTTATTCCATTTGAGAGTGGAACCCTGAAGGTTTTGCTACATGGCTCCCTAGTCATATGGGTCAAGAAGGCCGAAAACCTTCCTGACATGGAGAGTTTTCGCAAGCATGTGGGGCATGCAATTGCGAAGTTGCCTGGGACGAGACTCAAAAATATAATCAGTTCTCCATATGTTACGATTTCTTTATCAAATGCTGTGATTGGGAGGACCTTTGTGATGAGTAGTACCGAGAACCCTGTGTGGAAGCAACATTTTGATGTTCCTGTTGCTCATTATGCTTCACGAGTGAACTTTGTTGTGAAACACAGTGATGTTTTCGGCTCTAAGACCATAGGTTTTGTTGGAATTTCAGCTCAACGGTTGTACTCTGGCGTCAAAGTTGAGGGAACCTTCCCTATCCTTGATACTACCAGTGGTAAAAGCTGTATGCCTGGAGCTGTGTTGAGCTTGTCAATTCAGTATACCGCGATTGAAAAAATGGCATTTTATAATAGCGGAGTAGGTTTAGATCCTGATCATCAAGGGGTCCCTGGTACTTACTTTCCTGTTAGGAAAGGCGGTAAAGTTACTCTTTATCAAGATGCTCATGCCCCTGATGGTTGCCTCCCCAACTTCAAGCTTGATGGTGGTCGTAAGTACGATCATGGAAATTGTTGGCAAGACATATTTGATGCAATAAGTCAGGCCCGCCATTTGATATACATAACTGGGTGGTCACTGAACCCCAAAGTCAGATTGCTTCGGAATAATAATGGTTCATCAGATAGCACATTAGGTGATCTGCTGAAGACCAAGTCACAGAAAGGTGTGAAAGTTCTGCTTCTTGTTTGGGACGATCCAACTTCTATTAAGGGATTTAAAATGGAAGGGCTCATGCATACCAATGATGAAGACGCTCGACGTTTCTTTAAGGACTCTTCAGTTCAATTTCTACTCTGCCCTCGATCATCAGTCCAAAGCTTGGGGAAAAAGATGGAAGCTGGAATAGTCTATACCCATCATCAGAAAACTGTAATTGTGGACGCTGATGCTGGTCATTCTAAAAGAAAGATCATTGCATTTGTTGGAGGTCTTGACTTGTGCTTGGGACGTTATGATACTCCGGAGCATTCTATATTTAGGACCTTACGGACAGTGCACAAGGATGACAATTATAACCCTACTTTCTCGAAACCCGTTATTGGGTGTCCAAGGCAGCCATGGCATGATTTGCACAGTAAAATTGATGGTCCAGCAGCTTATGACATCCTCACCAATTTTGAGCAGCGTTGGGGGATGGCTTCAAAACCACATGGTCTTCACAAACTAACAGAACGAGGACTTCAAAAACTGAAATTACGAGGAGATGATAATGATGCATTACTCAAGATTGAGAAAATTCCTGAAATTCTTGGGATGACAGAGGTTCCTCGCTTGAGCGAGGATGATAAAGAAGCTTGGGATATTCAGGTTTTCCGTTCAATTGATTCCCATTCAGTGAAAGGATTTCCCGAAGACCCTGGAGAAGCTACAAGGATGAACCTTGTATGTGGGAAAAATGTGCTGATAGACATGAGTATACATGCAGCATATGTAAGAGCAATCCGTGCGGCTCAACATTTTATTTACATAGAGAACCAGTACTTTCTTGGATCATCATATAATTGGAATTCAGACATTAGTGATACAGGTGCAAACAATTTGATACCAATGGAAATCGCTCTGAAAATAGCAAACAAAATCAAAGCAAATGAGAAGTTTTCTGTATATATTGTCATCCCCATGTGGCCAGAAGGTGATCCCAATAGTATGCCTCTTCAAAGAATTCTCCTTTGGCAGCATAAAACAATGCAAATGATGTATGAAATCATTTACAAGGCCCTAAAGGAGGTTGGACTCGAAAATAAGTACTGTCCACAAGACTATTTGAATTTTTTTTGCCTTGGAAATCGTGAGAAACCAAGTGGAGAAGGCAATTCTGCTGCAAATAATTCAAGTGCAGCAAACTCTCCTGAAGTACTCACTCAGAATAGTCGGCGATTTATGATTTATGTCCATTCTAAAGGAATGATAGTGGATGATGAATATGTTATAGTAGGATCTGCAAATATCAATCAGCGATCCATGGAAGGTCTCCGAGATACTGAAATAGCAATGGGGGCTTATCAGCCTCATCATACTTGGGCGCGAAAACTCTCAAGTCCACACGGAAAGATATATGGATACAGAATGTCACTGTGGGCAGAGCATTTAGGACTTGTTGAAGAATGTTTCAATCAGCCAGAGAGTCTTGAATGTGTTCAAAGGGTAAGGTCTTTGGGTGAGCAGAACTGGAGTCAATACTTGGCTGATGAAGTCACAGAAATGAAGGGTCACCTCCTCAAGTATCCGGTTGAAGTTAGTCCAACGGGCACAGTGGGGCCTCTTCCAGGATGTCCAACATTTCCAGACGTTGGTGGCAATATATTGGGGAGTCTCGGCGATGTGAAAATGAAGAATCTGCGTATCAGTAGCAGTGGGAGGACAATATCACTTAGAGGCGCCATCATCACCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006629 GO:0006643 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008289 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009816 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0022626 GO:0030054 GO:0032501 GO:0032502 GO:0032991 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0071704 GO:0071944 GO:0098542 GO:1901981 GO:1902936 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

868

Amino Acids

96.7

Weight (kDa)

8.36

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	37 - 154	7.4e-13	C2 domain
PLDc_2	PF13091	683 - 734	2.1e-06	PLD-like domain
PLDc	PF00614	698 - 723	2.8e-08	Phospholipase D Active site motif
PLD_C	PF12357	770 - 840	7.7e-30	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11830 AT4G11830 AT4G11830 AT4G11830 AT4G11840 AT4G11840 AT4G11850
fragaria_vesca	FvH4_5g01274 FvH4_5g01290 FvH4_5g01290 FvH4_5g01290
malus_domestica	MD04G1069600.v1.1
prunus_persica	Prupe.5G088300_v2.0.a1 Prupe.5G088300_v2.0.a1
pyrus_communis	pycom04g06330
rosa_chinensis	RchiOBHm_Chr4g0413221 RchiOBHm_Chr7g0199651 RchiOBHm_Chr7g0199691 RchiOBHm_Chr7g0199711 RchiOBHm_Chr7g0199731
rosa_laevigata	RLG00000003775 RLG00000003776 RLG00000003777 RLG00000003778 RLG00000003779
rosa_multiflora	Rmu_co8400099.1_g000001 Rmu_sc0002748.1_g000025 Rmu_sc0002748.1_g000027 Rmu_sc0002748.1_g000028 Rmu_sc0009191.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256480 Rroxscaffold_3G00256490 Rroxscaffold_3G00256520
rosa_rugosa	Rorug07G0055600 Rorug07G0055800 Rorug07G0055900
rosa_samantha	Rh7AG180700 Rh7AG181000 Rh7AG181200 Rh7BG183600 Rh7BG183900 Rh7BG184100 Rh7CG190400 Rh7CG190600 Rh7CG190700 Rh7DG183600 Rh7DG183800
rosa_wichuraiana	Rw7G015870 Rw7G015880 Rw7G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	555, 1221
AccB1I	GGYRCC	1 cut(s)	2585
AccB7I	CCANNNNNTGG	2 cut(s)	1027, 2498
AccI	GTMKAC	2 cut(s)	527, 1624
AccII	CGCG	2 cut(s)	533, 2233
AccIII	TCCGGA	1 cut(s)	1168
AciI	CCGC	5 cut(s)	531, 561, 624, 754, 1655
AclWI	GGATC	6 cut(s)	569, 896, 1705, 1838, 2152, 2160
AcoI	YGGCCR	1 cut(s)	1832
AcsI	RAATTY	6 cut(s)	411, 1443, 1452, 1714, 1869, 1975
AcuI	CTGAAG	4 cut(s)	113, 872, 969, 2079
AcyI	GRCGYC	2 cut(s)	438, 2586
AfaI	GTAC	7 cut(s)	292, 431, 601, 704, 1688, 1955, 2064
AfiI	CCNNNNNNNGG	7 cut(s)	55, 1027, 1247, 1248, 1933, 2474, 2498
AjnI	CCWGG	6 cut(s)	18, 199, 496, 595, 1564, 2473
AjuI	GAANNNNNNNTTGG	2 cut(s)	1861, 1893
Alw21I	GWGCWC	1 cut(s)	1206
Alw26I	GTCTC	3 cut(s)	202, 2183, 2525
Alw44I	GTGCAC	1 cut(s)	1202
AlwI	GGATC	6 cut(s)	569, 896, 1705, 1838, 2152, 2160
Aor13HI	TCCGGA	1 cut(s)	1168
AoxI	GGCC	6 cut(s)	40, 135, 750, 1832, 1923, 2465
ApaLI	GTGCAC	1 cut(s)	1202
ApeKI	GCWGC	7 cut(s)	1261, 1301, 1330, 1631, 1882, 2027, 2045
ApoI	RAATTY	6 cut(s)	411, 1443, 1452, 1714, 1869, 1975
Asp700I	GAANNNNTTC	3 cut(s)	69, 144, 2343
AspLEI	GCGC	2 cut(s)	2233, 2588
AspS9I	GGNCC	8 cut(s)	41, 273, 592, 751, 1188, 1295, 1924, 2465
AsuHPI	GGTGA	6 cut(s)	854, 1309, 1853, 2378, 2411, 2587
AvaII	GGWCC	4 cut(s)	273, 592, 1188, 1295
AxyI	CCTNAGG	1 cut(s)	54
BaeGI	GKGCMC	2 cut(s)	1206, 2459
BalI	TGGCCA	1 cut(s)	1834
BanI	GGYRCC	1 cut(s)	2585
BanII	GRGCYC	1 cut(s)	939
BauI	CACGAG	1 cut(s)	348
BbsI	GAAGAC	4 cut(s)	860, 963, 1355, 1566
Bbv12I	GWGCWC	1 cut(s)	1206
BbvI	GCAGC	7 cut(s)	1273, 1313, 1342, 1643, 1894, 2014, 2057
BccI	CCATC	8 cut(s)	57, 656, 683, 1033, 1071, 1286, 1336, 2597
BciT130I	CCWGG	6 cut(s)	20, 201, 498, 597, 1566, 2475
BciVI	GTATCC	2 cut(s)	2261, 2442
BclI	TGATCA	1 cut(s)	580
BcoDI	GTCTC	3 cut(s)	202, 2183, 2525
BfaI	CTAG	1 cut(s)	116
BfoI	RGCGCY	1 cut(s)	2589
BfuI	GTATCC	2 cut(s)	2261, 2442
BisI	GCNGC	8 cut(s)	1262, 1302, 1331, 1632, 1656, 1883, 2028, 2046
BlsI	GCNGC	8 cut(s)	1263, 1303, 1332, 1633, 1657, 1884, 2029, 2047
BmcAI	AGTACT	3 cut(s)	1688, 1955, 2064
Bme1390I	CCNGG	6 cut(s)	20, 201, 498, 597, 1566, 2475
Bme18I	GGWCC	4 cut(s)	273, 592, 1188, 1295
BmgT120I	GGNCC	8 cut(s)	41, 273, 592, 751, 1188, 1295, 1924, 2465
BmiI	GGNNCC	8 cut(s)	88, 112, 454, 593, 594, 1473, 2466, 2587
BmrFI	CCNGG	6 cut(s)	20, 201, 498, 597, 1566, 2475
BmrI	ACTGGG	1 cut(s)	783
BmsI	GCATC	4 cut(s)	637, 727, 1084, 1411
BmuI	ACTGGG	1 cut(s)	783
BpiI	GAAGAC	4 cut(s)	860, 963, 1355, 1566
BpmI	CTGGAG	3 cut(s)	519, 1587, 2398
BpuEI	CTTGAG	4 cut(s)	1415, 1501, 2227, 2411
BsaBI	GATNNNNATC	1 cut(s)	579
BsaHI	GRCGYC	2 cut(s)	438, 2586
BsaI	GGTCTC	1 cut(s)	2183
BsaJI	CCNNGG	7 cut(s)	200, 595, 1256, 1265, 1564, 1987, 2169
BsaWI	WCCGGW	2 cut(s)	1168, 2434
Bsc4I	CCNNNNNNNGG	7 cut(s)	55, 1027, 1247, 1248, 1933, 2474, 2498
Bse1I	ACTGG	4 cut(s)	477, 778, 1684, 2381
Bse21I	CCTNAGG	1 cut(s)	54
Bse3DI	GCAATG	2 cut(s)	1119, 2205
Bse8I	GATNNNNATC	1 cut(s)	579
BseAI	TCCGGA	1 cut(s)	1168
BseBI	CCWGG	6 cut(s)	20, 201, 498, 597, 1566, 2475
BseDI	CCNNGG	7 cut(s)	200, 595, 1256, 1265, 1564, 1987, 2169
BseJI	GATNNNNATC	1 cut(s)	579
BseLI	CCNNNNNNNGG	7 cut(s)	55, 1027, 1247, 1248, 1933, 2474, 2498
BseMI	GCAATG	2 cut(s)	1119, 2205
BseMII	CTCAG	2 cut(s)	68, 2084
BseNI	ACTGG	4 cut(s)	477, 778, 1684, 2381
BseRI	GAGGAG	2 cut(s)	1422, 2414
BseSI	GKGCMC	2 cut(s)	1206, 2459
BseXI	GCAGC	7 cut(s)	1273, 1313, 1342, 1643, 1894, 2014, 2057
BsgI	GTGCAG	1 cut(s)	2064
Bsh1236I	CGCG	2 cut(s)	533, 2233
BshFI	GGCC	6 cut(s)	42, 137, 752, 1834, 1925, 2467
BshNI	GGYRCC	1 cut(s)	2585
BsiHKAI	GWGCWC	1 cut(s)	1206
BsiSI	CCGG	2 cut(s)	1169, 2435
BslFI	GGGAC	4 cut(s)	217, 578, 911, 1167
BslI	CCNNNNNNNGG	7 cut(s)	55, 1027, 1247, 1248, 1933, 2474, 2498
BsmAI	GTCTC	3 cut(s)	202, 2183, 2525
BsmFI	GGGAC	4 cut(s)	217, 578, 911, 1167
BsmI	GAATGC	1 cut(s)	1174
BsnI	GGCC	6 cut(s)	42, 137, 752, 1834, 1925, 2467
Bso31I	GGTCTC	1 cut(s)	2183
Bsp1286I	GDGCHC	3 cut(s)	939, 1206, 2459
Bsp13I	TCCGGA	1 cut(s)	1168
Bsp19I	CCATGG	2 cut(s)	1265, 2169
BspACI	CCGC	5 cut(s)	531, 561, 624, 754, 1655
BspANI	GGCC	6 cut(s)	42, 137, 752, 1834, 1925, 2467
BspCNI	CTCAG	2 cut(s)	67, 2083
BspEI	TCCGGA	1 cut(s)	1168
BspFNI	CGCG	2 cut(s)	533, 2233
BspLI	GGNNCC	8 cut(s)	88, 112, 454, 593, 594, 1473, 2466, 2587
BspPI	GGATC	6 cut(s)	569, 896, 1705, 1838, 2152, 2160
BspT107I	GGYRCC	1 cut(s)	2585
BspTNI	GGTCTC	1 cut(s)	2183
BsrDI	GCAATG	2 cut(s)	1119, 2205
BsrI	ACTGG	4 cut(s)	477, 778, 1684, 2381
BssECI	CCNNGG	7 cut(s)	200, 595, 1256, 1265, 1564, 1987, 2169
BssNAI	GTATAC	2 cut(s)	528, 1625
BssNI	GRCGYC	2 cut(s)	438, 2586
BssSI	CACGAG	1 cut(s)	348
BssT1I	CCWWGG	4 cut(s)	1256, 1265, 1987, 2169
Bst1107I	GTATAC	2 cut(s)	528, 1625
Bst2BI	CACGAG	1 cut(s)	348
Bst2UI	CCWGG	6 cut(s)	20, 201, 498, 597, 1566, 2475
Bst4CI	ACNGT	8 cut(s)	374, 426, 1078, 1201, 1283, 1958, 2283, 2461
Bst6I	CTCTTC	3 cut(s)	988, 1866, 2475
BstACI	GRCGYC	2 cut(s)	438, 2586
BstAPI	GCANNNNNTGC	2 cut(s)	1276, 1652
BstC8I	GCNNGC	3 cut(s)	170, 183, 754
BstDEI	CTNAG	4 cut(s)	54, 390, 2070, 2579
BstDSI	CCRYGG	2 cut(s)	1265, 2169
BstEII	GGTNACC	1 cut(s)	2417
BstENI	CCTNNNNNAGG	2 cut(s)	1931, 2472
BstFNI	CGCG	2 cut(s)	533, 2233
BstH2I	RGCGCY	1 cut(s)	2589
BstHHI	GCGC	2 cut(s)	2233, 2588
BstMAI	GTCTC	3 cut(s)	202, 2183, 2525
BstMWI	GCNNNNNNNGC	6 cut(s)	178, 341, 1267, 1276, 1652, 2204
BstNI	CCWGG	6 cut(s)	20, 201, 498, 597, 1566, 2475
BstNSI	RCATGY	3 cut(s)	176, 185, 1631
BstPI	GGTNACC	1 cut(s)	2417
BstSCI	CCNGG	6 cut(s)	18, 199, 496, 595, 1564, 2473
BstSLI	GKGCMC	2 cut(s)	1206, 2459
BstUI	CGCG	2 cut(s)	533, 2233
BstV1I	GCAGC	7 cut(s)	1273, 1313, 1342, 1643, 1894, 2014, 2057
BstV2I	GAAGAC	4 cut(s)	860, 963, 1355, 1566
BstX2I	RGATCY	2 cut(s)	574, 2144
BstYI	RGATCY	2 cut(s)	574, 2144
BstZ17I	GTATAC	2 cut(s)	528, 1625
Bsu36I	CCTNAGG	1 cut(s)	54
BsuI	GTATCC	2 cut(s)	2261, 2442
BsuRI	GGCC	6 cut(s)	42, 137, 752, 1834, 1925, 2467
BtgI	CCRYGG	2 cut(s)	1265, 2169
BtgZI	GCGATG	1 cut(s)	2541
BtsI	GCAGTG	1 cut(s)	2566
BtsIMutI	CAGTG	8 cut(s)	379, 484, 782, 1206, 1548, 2279, 2466, 2566
Cac8I	GCNNGC	3 cut(s)	170, 183, 754
CfoI	GCGC	2 cut(s)	2233, 2588
Cfr13I	GGNCC	8 cut(s)	41, 273, 592, 751, 1188, 1295, 1924, 2465
CseI	GACGC	3 cut(s)	427, 968, 1097
Csp6I	GTAC	7 cut(s)	291, 430, 600, 703, 1687, 1954, 2063
CviQI	GTAC	7 cut(s)	291, 430, 600, 703, 1687, 1954, 2063
DdeI	CTNAG	4 cut(s)	54, 390, 2070, 2579
DinI	GGCGCC	1 cut(s)	2587
DraI	TTTAAA	1 cut(s)	925
EaeI	YGGCCR	1 cut(s)	1832
Eam1104I	CTCTTC	3 cut(s)	988, 1866, 2475
EarI	CTCTTC	3 cut(s)	988, 1866, 2475
Eco130I	CCWWGG	4 cut(s)	1256, 1265, 1987, 2169
Eco24I	GRGCYC	1 cut(s)	939
Eco31I	GGTCTC	1 cut(s)	2183
Eco47I	GGWCC	4 cut(s)	273, 592, 1188, 1295
Eco57I	CTGAAG	4 cut(s)	113, 872, 969, 2079
Eco81I	CCTNAGG	1 cut(s)	54
Eco91I	GGTNACC	1 cut(s)	2417
EcoNI	CCTNNNNNAGG	2 cut(s)	1931, 2472
EcoO109I	RGGNCCY	5 cut(s)	273, 592, 1188, 1924, 2465
EcoO65I	GGTNACC	1 cut(s)	2417
EcoRI	GAATTC	2 cut(s)	1714, 1869
EcoRII	CCWGG	6 cut(s)	18, 199, 496, 595, 1564, 2473
EcoT14I	CCWWGG	4 cut(s)	1256, 1265, 1987, 2169
EcoT22I	ATGCAT	2 cut(s)	945, 1426
EcoT38I	GRGCYC	1 cut(s)	939
EgeI	GGCGCC	1 cut(s)	2587
EheI	GGCGCC	1 cut(s)	2587
ErhI	CCWWGG	4 cut(s)	1256, 1265, 1987, 2169
FalI	AAGNNNNNCTT	4 cut(s)	621, 653, 870, 902
FaqI	GGGAC	4 cut(s)	217, 578, 911, 1167
FauI	CCCGC	1 cut(s)	761
FauNDI	CATATG	3 cut(s)	122, 235, 1636
FbaI	TGATCA	1 cut(s)	580
FblI	GTMKAC	2 cut(s)	527, 1624
Fnu4HI	GCNGC	8 cut(s)	1262, 1302, 1331, 1632, 1656, 1883, 2028, 2046
FriOI	GRGCYC	1 cut(s)	939
Fsp4HI	GCNGC	8 cut(s)	1262, 1302, 1331, 1632, 1656, 1883, 2028, 2046
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	2 cut(s)	2232, 2587
GluI	GCNGC	8 cut(s)	1262, 1302, 1331, 1632, 1656, 1883, 2028, 2046
GsuI	CTGGAG	3 cut(s)	519, 1587, 2398
HaeII	RGCGCY	1 cut(s)	2589
HaeIII	GGCC	6 cut(s)	42, 137, 752, 1834, 1925, 2467
HapII	CCGG	2 cut(s)	1169, 2435
HgaI	GACGC	3 cut(s)	427, 968, 1097
HhaI	GCGC	2 cut(s)	2233, 2588
Hin1I	GRCGYC	2 cut(s)	438, 2586
Hin6I	GCGC	2 cut(s)	2231, 2586
HinP1I	GCGC	2 cut(s)	2231, 2586
HindIII	AAGCTT	3 cut(s)	683, 1024, 1500
HinfI	GANTC	9 cut(s)	23, 210, 980, 1532, 1941, 2332, 2380, 2518, 2542
HpaII	CCGG	2 cut(s)	1169, 2435
HphI	GGTGA	6 cut(s)	854, 1309, 1853, 2378, 2411, 2587
Hpy166II	GTNNAC	7 cut(s)	355, 528, 1087, 1204, 1625, 1961, 2249
Hpy188I	TCNGA	8 cut(s)	800, 810, 829, 1071, 1720, 1770, 2073, 2183
Hpy8I	GTNNAC	7 cut(s)	355, 528, 1087, 1204, 1625, 1961, 2249
Hpy99I	CGWCG	1 cut(s)	969
HpyAV	CCTTC	9 cut(s)	88, 127, 155, 466, 926, 1832, 2009, 2168, 2407
HpyCH4III	ACNGT	8 cut(s)	374, 426, 1078, 1201, 1283, 1958, 2283, 2461
HpyCH4IV	ACGT	3 cut(s)	967, 1156, 2496
HpyF10VI	GCNNNNNNNGC	6 cut(s)	178, 341, 1267, 1276, 1652, 2204
HpyF3I	CTNAG	4 cut(s)	54, 390, 2070, 2579
HpySE526I	ACGT	3 cut(s)	967, 1156, 2496
Hsp92I	GRCGYC	2 cut(s)	438, 2586
HspAI	GCGC	2 cut(s)	2231, 2586
KasI	GGCGCC	1 cut(s)	2585
KflI	GGGWCCC	1 cut(s)	592
Kpn2I	TCCGGA	1 cut(s)	1168
Ksp22I	TGATCA	1 cut(s)	580
LmnI	GCTCC	3 cut(s)	116, 500, 1171
Lsp1109I	GCAGC	7 cut(s)	1273, 1313, 1342, 1643, 1894, 2014, 2057
LweI	GCATC	4 cut(s)	637, 727, 1084, 1411
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	3 cut(s)	967, 1156, 2496
MaeIII	GTNAC	7 cut(s)	238, 631, 780, 861, 2277, 2401, 2417
MboII	GAAGA	9 cut(s)	865, 968, 975, 1355, 1571, 1853, 2321, 2462, 2551
MfeI	CAATTG	2 cut(s)	186, 1527
MflI	RGATCY	2 cut(s)	574, 2144
MhlI	GDGCHC	3 cut(s)	939, 1206, 2459
MlsI	TGGCCA	1 cut(s)	1834
MluNI	TGGCCA	1 cut(s)	1834
Mly113I	GGCGCC	1 cut(s)	2586
MlyI	GAGTC	6 cut(s)	204, 974, 1935, 2341, 2389, 2527
MmeI	TCCRAC	6 cut(s)	388, 929, 1111, 1918, 2474, 2507
Mox20I	TGGCCA	1 cut(s)	1834
Mph1103I	ATGCAT	2 cut(s)	945, 1426
MroI	TCCGGA	1 cut(s)	1168
MroXI	GAANNNNTTC	3 cut(s)	69, 144, 2343
MscI	TGGCCA	1 cut(s)	1834
MseI	TTAA	3 cut(s)	915, 924, 975
MslI	CAYNNNNRTG	6 cut(s)	321, 375, 948, 1209, 1826, 2408
Msp20I	TGGCCA	1 cut(s)	1834
MspI	CCGG	2 cut(s)	1169, 2435
MspR9I	CCNGG	6 cut(s)	20, 201, 498, 597, 1566, 2475
MunI	CAATTG	2 cut(s)	186, 1527
Mva1269I	GAATGC	1 cut(s)	1174
MvaI	CCWGG	6 cut(s)	20, 201, 498, 597, 1566, 2475
MvnI	CGCG	2 cut(s)	533, 2233
MwoI	GCNNNNNNNGC	6 cut(s)	178, 341, 1267, 1276, 1652, 2204
NarI	GGCGCC	1 cut(s)	2586
NcoI	CCATGG	2 cut(s)	1265, 2169
NdeI	CATATG	3 cut(s)	122, 235, 1636
NlaIV	GGNNCC	8 cut(s)	88, 112, 454, 593, 594, 1473, 2466, 2587
NmeAIII	GCCGAG	1 cut(s)	2502
NmuCI	GTSAC	5 cut(s)	780, 861, 2277, 2401, 2417
NsiI	ATGCAT	2 cut(s)	945, 1426
NspI	RCATGY	3 cut(s)	176, 185, 1631
PaeI	GCATGC	1 cut(s)	185
PctI	GAATGC	1 cut(s)	1174
PdmI	GAANNNNTTC	3 cut(s)	69, 144, 2343
PfeI	GAWTC	3 cut(s)	23, 1532, 2542
PflFI	GACNNNGTC	1 cut(s)	859
PflMI	CCANNNNNTGG	2 cut(s)	1027, 2498
PfoI	TCCNGGA	1 cut(s)	2473
PkrI	GCNGC	8 cut(s)	1263, 1303, 1332, 1633, 1657, 1884, 2029, 2047
PleI	GAGTC	6 cut(s)	204, 974, 1935, 2340, 2388, 2526
PluTI	GGCGCC	1 cut(s)	2589
PpsI	GAGTC	6 cut(s)	204, 974, 1935, 2340, 2388, 2526
PpuMI	RGGWCCY	3 cut(s)	273, 592, 1188
PsiI	TTATAA	2 cut(s)	555, 1221
Psp5II	RGGWCCY	3 cut(s)	273, 592, 1188
Psp6I	CCWGG	6 cut(s)	18, 199, 496, 595, 1564, 2473
PspEI	GGTNACC	1 cut(s)	2417
PspGI	CCWGG	6 cut(s)	18, 199, 496, 595, 1564, 2473
PspN4I	GGNNCC	8 cut(s)	88, 112, 454, 593, 594, 1473, 2466, 2587
PspPI	GGNCC	8 cut(s)	41, 273, 592, 751, 1188, 1295, 1924, 2465
PspPPI	RGGWCCY	3 cut(s)	273, 592, 1188
PsuI	RGATCY	2 cut(s)	574, 2144
PsyI	GACNNNGTC	1 cut(s)	859
RsaI	GTAC	7 cut(s)	292, 431, 601, 704, 1688, 1955, 2064
RsaNI	GTAC	7 cut(s)	291, 430, 600, 703, 1687, 1954, 2063
RseI	CAYNNNNRTG	6 cut(s)	321, 375, 948, 1209, 1826, 2408
SaqAI	TTAA	3 cut(s)	915, 924, 975
SatI	GCNGC	8 cut(s)	1262, 1302, 1331, 1632, 1656, 1883, 2028, 2046
Sau96I	GGNCC	8 cut(s)	41, 273, 592, 751, 1188, 1295, 1924, 2465
ScaI	AGTACT	3 cut(s)	1688, 1955, 2064
SchI	GAGTC	6 cut(s)	204, 974, 1935, 2341, 2389, 2527
ScrFI	CCNGG	6 cut(s)	20, 201, 498, 597, 1566, 2475
SduI	GDGCHC	3 cut(s)	939, 1206, 2459
SfaNI	GCATC	4 cut(s)	637, 727, 1084, 1411
SfoI	GGCGCC	1 cut(s)	2587
SinI	GGWCC	4 cut(s)	273, 592, 1188, 1295
SmiMI	CAYNNNNRTG	6 cut(s)	321, 375, 948, 1209, 1826, 2408
SmlI	CTYRAG	4 cut(s)	1430, 1480, 2242, 2426
SmoI	CTYRAG	4 cut(s)	1430, 1480, 2242, 2426
SphI	GCATGC	1 cut(s)	185
SsiI	CCGC	5 cut(s)	531, 561, 624, 754, 1655
SspDI	GGCGCC	1 cut(s)	2585
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	6 cut(s)	18, 199, 496, 595, 1564, 2473
StyI	CCWWGG	4 cut(s)	1256, 1265, 1987, 2169
TaaI	ACNGT	8 cut(s)	374, 426, 1078, 1201, 1283, 1958, 2283, 2461
TaiI	ACGT	3 cut(s)	970, 1159, 2499
TaqI	TCGA	4 cut(s)	964, 1009, 1235, 1944
TatI	WGTACW	4 cut(s)	429, 1686, 1953, 2062
TauI	GCSGC	1 cut(s)	1658
TfiI	GAWTC	3 cut(s)	23, 1532, 2542
Tru1I	TTAA	3 cut(s)	915, 924, 975
Tru9I	TTAA	3 cut(s)	915, 924, 975
TscAI	CASTG	8 cut(s)	379, 484, 789, 1206, 1548, 2286, 2466, 2566
TseFI	GTSAC	5 cut(s)	780, 861, 2277, 2401, 2417
TseI	GCWGC	7 cut(s)	1261, 1301, 1330, 1631, 1882, 2027, 2045
Tsp45I	GTSAC	5 cut(s)	780, 861, 2277, 2401, 2417
TspDTI	ATGAA	8 cut(s)	813, 969, 1598, 1923, 2142, 2412, 2426, 2552
TspGWI	ACGGA	4 cut(s)	1210, 1511, 1640, 2268
TspRI	CASTG	8 cut(s)	379, 484, 789, 1206, 1548, 2286, 2466, 2566
Tth111I	GACNNNGTC	1 cut(s)	859
Van91I	CCANNNNNTGG	2 cut(s)	1027, 2498
VneI	GTGCAC	1 cut(s)	1202
VpaK11BI	GGWCC	4 cut(s)	273, 592, 1188, 1295
XagI	CCTNNNNNAGG	2 cut(s)	1931, 2472
XapI	RAATTY	6 cut(s)	411, 1443, 1452, 1714, 1869, 1975
XceI	RCATGY	3 cut(s)	176, 185, 1631
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1263, 1691
XmiI	GTMKAC	2 cut(s)	527, 1624
XmnI	GAANNNNTTC	3 cut(s)	69, 144, 2343
XspI	CTAG	1 cut(s)	116
ZrmI	AGTACT	3 cut(s)	1688, 1955, 2064
Zsp2I	ATGCAT	2 cut(s)	945, 1426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.