Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8400099.1

Orthogroup ID

OG0001557

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 991

Gene Structure 991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8400099.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atggctaatcttggttataaggaatcgttgtcatttggaggctctggccatgcgcagggtcaacaagttgtgccatttgagagtggagccctgaggcttttgctacacgggtccctagttatatgtgtcaaggaggccaagaatcttcctgatatggatggtttgcataagcatatggggcgtgtgatttccaagttgcctggaagaagtagcaaaaagacaaccagtgctccatatgttacaattgcactatcaggtgctgtagttgggaggacctttgtgattagtaatagtcagaacccggtctggaatcaacattttgatgttccggttgcgcactatgcttctgaagtgcattttgttgtgaagcataatgatgtggtgggatcccagactataggttctgtgggaatcccagttgaagaattatactctggcgtaaaaattgagggaaccttccctatccttaactctactggtcatatctgtatgcctggagttgttttgagcttatcaattcagtatacctcaattcaaaagatgaccttttgcaattgtggagtaggttcagatcctgatcatcaaggggtccctggtacttactttcctcttaggaaaggcggtaaagtaactctctatcaagatgcccatgttcctgatggttgccttcccaattttgagcttgatggcggtcttgagtatgagcatggaaattgttggcaagacatatttgatgcaataagtaaggcccgtcacttgatatacattaccgggtggtcattgtgccacaaagttacattggttcgggataatcatggtgcatcagattgcacattaggggatcttcttaagaccaagtcacaggaaggtgtgagagtgctgcttcttgtttgggatgatccaacttcaaggaatatcatgggatctataaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006629 GO:0006643 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008289 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009816 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0022626 GO:0030054 GO:0032501 GO:0032502 GO:0032991 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0071704 GO:0071944 GO:0098542 GO:1901981 GO:1902936 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

311

Amino Acids

33.69

Weight (kDa)

6.94

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11830 AT4G11830 AT4G11830 AT4G11830 AT4G11840 AT4G11840 AT4G11850
fragaria_vesca	FvH4_5g01274 FvH4_5g01290 FvH4_5g01290 FvH4_5g01290
malus_domestica	MD04G1069600.v1.1
prunus_persica	Prupe.5G088300_v2.0.a1 Prupe.5G088300_v2.0.a1
pyrus_communis	pycom04g06330
rosa_chinensis	RchiOBHm_Chr4g0413221 RchiOBHm_Chr7g0199651 RchiOBHm_Chr7g0199691 RchiOBHm_Chr7g0199711 RchiOBHm_Chr7g0199731
rosa_laevigata	RLG00000003775 RLG00000003776 RLG00000003777 RLG00000003778 RLG00000003779
rosa_multiflora	Rmu_co8400099.1_g000001 Rmu_sc0002748.1_g000025 Rmu_sc0002748.1_g000027 Rmu_sc0002748.1_g000028 Rmu_sc0009191.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256480 Rroxscaffold_3G00256490 Rroxscaffold_3G00256520
rosa_rugosa	Rorug07G0055600 Rorug07G0055800 Rorug07G0055900
rosa_samantha	Rh7AG180700 Rh7AG181000 Rh7AG181200 Rh7BG183600 Rh7BG183900 Rh7BG184100 Rh7CG190400 Rh7CG190600 Rh7CG190700 Rh7DG183600 Rh7DG183800
rosa_wichuraiana	Rw7G015870 Rw7G015880 Rw7G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	18
Acc16I	TGCGCA	2 cut(s)	54, 336
AccI	GTMKAC	1 cut(s)	524
AciI	CCGC	2 cut(s)	621, 690
AclWI	GGATC	6 cut(s)	381, 394, 566, 849, 893, 931
AcoI	YGGCCR	1 cut(s)	46
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	1 cut(s)	598
AfiI	CCNNNNNNNGG	1 cut(s)	55
AflII	CTTAAG	1 cut(s)	848
AgsI	TTSAA	3 cut(s)	422, 536, 909
AjnI	CCWGG	3 cut(s)	199, 493, 592
AluBI	AGCT	2 cut(s)	510, 682
AluI	AGCT	2 cut(s)	510, 682
Alw21I	GWGCWC	1 cut(s)	232
AlwI	GGATC	6 cut(s)	381, 394, 566, 849, 893, 931
AlwNI	CAGNNNCTG	2 cut(s)	260, 575
AoxI	GGCC	3 cut(s)	46, 135, 747
ApeKI	GCWGC	1 cut(s)	880
AspLEI	GCGC	2 cut(s)	55, 337
AspS9I	GGNCC	4 cut(s)	111, 273, 589, 748
AsuC2I	CCSGG	2 cut(s)	302, 772
AvaII	GGWCC	3 cut(s)	111, 273, 589
AxyI	CCTNAGG	1 cut(s)	92
BalI	TGGCCA	1 cut(s)	48
BamHI	GGATCC	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	1 cut(s)	867
BccI	CCATC	3 cut(s)	152, 653, 680
BciT130I	CCWGG	3 cut(s)	201, 495, 594
BclI	TGATCA	1 cut(s)	577
BcnI	CCSGG	2 cut(s)	302, 772
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	2 cut(s)	261, 396
BfrI	CTTAAG	1 cut(s)	848
BisI	GCNGC	1 cut(s)	881
BlsI	GCNGC	1 cut(s)	882
Bme1390I	CCNGG	5 cut(s)	201, 302, 495, 594, 772
Bme18I	GGWCC	3 cut(s)	111, 273, 589
BmgT120I	GGNCC	4 cut(s)	111, 273, 589, 748
BmiI	GGNNCC	7 cut(s)	88, 112, 113, 388, 454, 590, 591
BmrFI	CCNGG	5 cut(s)	201, 302, 495, 594, 772
BmrI	ACTGGG	1 cut(s)	410
BmsI	GCATC	3 cut(s)	634, 724, 830
BmuI	ACTGGG	1 cut(s)	410
BpmI	CTGGAG	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	716
BpuMI	CCSGG	2 cut(s)	302, 772
BsaBI	GATNNNNATC	1 cut(s)	576
BsaJI	CCNNGG	1 cut(s)	592
BsaWI	WCCGGW	1 cut(s)	328
BsaXI	ACNNNNNCTCC	2 cut(s)	214, 244
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse1I	ACTGG	3 cut(s)	225, 416, 481
Bse21I	CCTNAGG	1 cut(s)	92
Bse8I	GATNNNNATC	1 cut(s)	576
BseBI	CCWGG	3 cut(s)	201, 495, 594
BseDI	CCNNGG	1 cut(s)	592
BseGI	GGATG	2 cut(s)	163, 901
BseJI	GATNNNNATC	1 cut(s)	576
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	3 cut(s)	225, 416, 481
BseXI	GCAGC	1 cut(s)	867
BshFI	GGCC	3 cut(s)	48, 137, 749
BsiHKAI	GWGCWC	1 cut(s)	232
BsiSI	CCGG	3 cut(s)	302, 329, 771
BslFI	GGGAC	2 cut(s)	97, 575
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmFI	GGGAC	2 cut(s)	97, 575
BsnI	GGCC	3 cut(s)	48, 137, 749
Bsp1286I	GDGCHC	2 cut(s)	91, 232
Bsp143I	GATC	6 cut(s)	386, 571, 577, 841, 898, 923
BspACI	CCGC	2 cut(s)	621, 690
BspANI	GGCC	3 cut(s)	48, 137, 749
BspCNI	CTCAG	1 cut(s)	84
BspLI	GGNNCC	7 cut(s)	88, 112, 113, 388, 454, 590, 591
BspPI	GGATC	6 cut(s)	381, 394, 566, 849, 893, 931
BspTI	CTTAAG	1 cut(s)	848
BsrI	ACTGG	3 cut(s)	225, 416, 481
BssECI	CCNNGG	1 cut(s)	592
BssMI	GATC	6 cut(s)	386, 571, 577, 841, 898, 923
BssNAI	GTATAC	1 cut(s)	525
Bst1107I	GTATAC	1 cut(s)	525
Bst2UI	CCWGG	3 cut(s)	201, 495, 594
BstAFI	CTTAAG	1 cut(s)	848
BstDEI	CTNAG	2 cut(s)	92, 611
BstF5I	GGATG	2 cut(s)	163, 901
BstHHI	GCGC	2 cut(s)	55, 337
BstKTI	GATC	6 cut(s)	389, 574, 580, 844, 901, 926
BstMBI	GATC	6 cut(s)	386, 571, 577, 841, 898, 923
BstMWI	GCNNNNNNNGC	2 cut(s)	178, 341
BstNI	CCWGG	3 cut(s)	201, 495, 594
BstSCI	CCNGG	5 cut(s)	199, 300, 493, 592, 770
BstSFI	CTRYAG	2 cut(s)	261, 396
BstV1I	GCAGC	1 cut(s)	867
BstX2I	RGATCY	4 cut(s)	386, 571, 841, 923
BstYI	RGATCY	4 cut(s)	386, 571, 841, 923
BstZ17I	GTATAC	1 cut(s)	525
Bsu36I	CCTNAGG	1 cut(s)	92
BsuRI	GGCC	3 cut(s)	48, 137, 749
BtsCI	GGATG	2 cut(s)	163, 901
BtsIMutI	CAGTG	1 cut(s)	232
CaiI	CAGNNNCTG	2 cut(s)	260, 575
CfoI	GCGC	2 cut(s)	55, 337
Cfr13I	GGNCC	4 cut(s)	111, 273, 589, 748
Csp6I	GTAC	1 cut(s)	597
CviAII	CATG	5 cut(s)	50, 650, 707, 815, 919
CviJI	RGCY	9 cut(s)	5, 42, 48, 89, 97, 137, 510, 682, 749
CviKI_1	RGCY	9 cut(s)	5, 42, 48, 89, 97, 137, 510, 682, 749
CviQI	GTAC	1 cut(s)	597
DdeI	CTNAG	2 cut(s)	92, 611
DpnI	GATC	6 cut(s)	388, 573, 579, 843, 900, 925
DpnII	GATC	6 cut(s)	386, 571, 577, 841, 898, 923
EaeI	YGGCCR	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	91
Eco47I	GGWCC	3 cut(s)	111, 273, 589
Eco57I	CTGAAG	1 cut(s)	369
Eco81I	CCTNAGG	1 cut(s)	92
EcoO109I	RGGNCCY	3 cut(s)	111, 273, 589
EcoRII	CCWGG	3 cut(s)	199, 493, 592
EcoT38I	GRGCYC	1 cut(s)	91
FaeI	CATG	5 cut(s)	53, 653, 710, 818, 922
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FaqI	GGGAC	2 cut(s)	97, 575
FatI	CATG	5 cut(s)	49, 649, 706, 814, 918
FauNDI	CATATG	2 cut(s)	174, 235
FbaI	TGATCA	1 cut(s)	577
FblI	GTMKAC	1 cut(s)	524
Fnu4HI	GCNGC	1 cut(s)	881
FokI	GGATG	2 cut(s)	170, 908
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	1 cut(s)	881
FspBI	CTAG	1 cut(s)	116
FspI	TGCGCA	2 cut(s)	54, 336
GlaI	GCGC	2 cut(s)	54, 336
GluI	GCNGC	1 cut(s)	881
GsuI	CTGGAG	1 cut(s)	516
HaeIII	GGCC	3 cut(s)	48, 137, 749
HapII	CCGG	3 cut(s)	302, 329, 771
HhaI	GCGC	2 cut(s)	55, 337
Hin1II	CATG	5 cut(s)	53, 653, 710, 818, 922
Hin6I	GCGC	2 cut(s)	53, 335
HinP1I	GCGC	2 cut(s)	53, 335
HincII	GTYRAC	1 cut(s)	62
HindII	GTYRAC	1 cut(s)	62
HinfI	GANTC	4 cut(s)	23, 142, 310, 411
HpaII	CCGG	3 cut(s)	302, 329, 771
Hpy166II	GTNNAC	2 cut(s)	62, 525
Hpy188I	TCNGA	4 cut(s)	297, 349, 571, 826
Hpy188III	TCNNGA	7 cut(s)	149, 307, 575, 641, 656, 695, 806
Hpy8I	GTNNAC	2 cut(s)	62, 525
HpyAV	CCTTC	3 cut(s)	466, 677, 860
HpyCH4V	TGCA	7 cut(s)	166, 248, 355, 552, 737, 821, 831
HpyF10VI	GCNNNNNNNGC	2 cut(s)	178, 341
HpyF3I	CTNAG	2 cut(s)	92, 611
Hsp92II	CATG	5 cut(s)	53, 653, 710, 818, 922
HspAI	GCGC	2 cut(s)	53, 335
KflI	GGGWCCC	2 cut(s)	111, 589
Ksp22I	TGATCA	1 cut(s)	577
Kzo9I	GATC	6 cut(s)	386, 571, 577, 841, 898, 923
LmnI	GCTCC	2 cut(s)	86, 235
Lsp1109I	GCAGC	1 cut(s)	867
LweI	GCATC	3 cut(s)	634, 724, 830
MaeI	CTAG	1 cut(s)	116
MaeIII	GTNAC	5 cut(s)	238, 628, 752, 793, 858
MalI	GATC	6 cut(s)	388, 573, 579, 843, 900, 925
MboI	GATC	6 cut(s)	386, 571, 577, 841, 898, 923
MboII	GAAGA	4 cut(s)	137, 216, 434, 836
MfeI	CAATTG	2 cut(s)	243, 553
MflI	RGATCY	4 cut(s)	386, 571, 841, 923
MhlI	GDGCHC	2 cut(s)	91, 232
MlsI	TGGCCA	1 cut(s)	48
MluCI	AATT	8 cut(s)	243, 425, 444, 516, 531, 553, 673, 712
MluNI	TGGCCA	1 cut(s)	48
MmeI	TCCRAC	1 cut(s)	926
MnlI	CCTC	7 cut(s)	32, 87, 127, 264, 442, 538, 618
Mox20I	TGGCCA	1 cut(s)	48
MscI	TGGCCA	1 cut(s)	48
MseI	TTAA	2 cut(s)	468, 849
MslI	CAYNNNNRTG	2 cut(s)	321, 375
Msp20I	TGGCCA	1 cut(s)	48
MspCI	CTTAAG	1 cut(s)	848
MspI	CCGG	3 cut(s)	302, 329, 771
MspR9I	CCNGG	5 cut(s)	201, 302, 495, 594, 772
MunI	CAATTG	2 cut(s)	243, 553
MvaI	CCWGG	3 cut(s)	201, 495, 594
MwoI	GCNNNNNNNGC	2 cut(s)	178, 341
NciI	CCSGG	2 cut(s)	302, 772
NdeI	CATATG	2 cut(s)	174, 235
NdeII	GATC	6 cut(s)	386, 571, 577, 841, 898, 923
NlaIII	CATG	5 cut(s)	53, 653, 710, 818, 922
NlaIV	GGNNCC	7 cut(s)	88, 112, 113, 388, 454, 590, 591
NmuCI	GTSAC	2 cut(s)	752, 858
NsbI	TGCGCA	2 cut(s)	54, 336
PfeI	GAWTC	4 cut(s)	23, 142, 310, 411
PflFI	GACNNNGTC	1 cut(s)	856
PkrI	GCNGC	1 cut(s)	882
PpuMI	RGGWCCY	3 cut(s)	111, 273, 589
PsiI	TTATAA	1 cut(s)	18
Psp5II	RGGWCCY	3 cut(s)	111, 273, 589
Psp6I	CCWGG	3 cut(s)	199, 493, 592
PspGI	CCWGG	3 cut(s)	199, 493, 592
PspN4I	GGNNCC	7 cut(s)	88, 112, 113, 388, 454, 590, 591
PspPI	GGNCC	4 cut(s)	111, 273, 589, 748
PspPPI	RGGWCCY	3 cut(s)	111, 273, 589
PstNI	CAGNNNCTG	2 cut(s)	260, 575
PsuI	RGATCY	4 cut(s)	386, 571, 841, 923
PsyI	GACNNNGTC	1 cut(s)	856
RsaI	GTAC	1 cut(s)	598
RsaNI	GTAC	1 cut(s)	597
RseI	CAYNNNNRTG	2 cut(s)	321, 375
SaqAI	TTAA	2 cut(s)	468, 849
SatI	GCNGC	1 cut(s)	881
Sau3AI	GATC	6 cut(s)	386, 571, 577, 841, 898, 923
Sau96I	GGNCC	4 cut(s)	111, 273, 589, 748
ScrFI	CCNGG	5 cut(s)	201, 302, 495, 594, 772
SduI	GDGCHC	2 cut(s)	91, 232
SfaNI	GCATC	3 cut(s)	634, 724, 830
SfcI	CTRYAG	2 cut(s)	261, 396
SinI	GGWCC	3 cut(s)	111, 273, 589
SmiMI	CAYNNNNRTG	2 cut(s)	321, 375
SmlI	CTYRAG	2 cut(s)	695, 848
SmoI	CTYRAG	2 cut(s)	695, 848
Sse9I	AATT	8 cut(s)	243, 425, 444, 516, 531, 553, 673, 712
SsiI	CCGC	2 cut(s)	621, 690
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	5 cut(s)	199, 300, 493, 592, 770
TasI	AATT	8 cut(s)	243, 425, 444, 516, 531, 553, 673, 712
TfiI	GAWTC	4 cut(s)	23, 142, 310, 411
Tru1I	TTAA	2 cut(s)	468, 849
Tru9I	TTAA	2 cut(s)	468, 849
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	2 cut(s)	752, 858
TseI	GCWGC	1 cut(s)	880
Tsp45I	GTSAC	2 cut(s)	752, 858
TspRI	CASTG	1 cut(s)	232
Tth111I	GACNNNGTC	1 cut(s)	856
Vha464I	CTTAAG	1 cut(s)	848
VpaK11BI	GGWCC	3 cut(s)	111, 273, 589
XcmI	CCANNNNNNNNNTGG	1 cut(s)	656
XmiI	GTMKAC	1 cut(s)	524
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.