Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001557

Physical Location & Seq

Genomic Coordinates Reverse (-)

3955759 .. 3956051

Gene Structure 293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0055800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGAGATTGCTAAATGTAAAATAAGTGCATTGTTTTCTGTCATGACTTTGGCTACATTTCTTTCCGAAGTGGCTTATGATCCTTTTGATCCATATGGGAGCATAAATATCAACTGGGATGTTTTGTCTTGGACTCCTGATGGCTGTGTTGTAAGTGTTACGTTCTACAACTTGTTTAACATAATTCAAACATTTATAGGAGTGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006629 GO:0006643 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008289 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009816 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0022626 GO:0030054 GO:0032501 GO:0032502 GO:0032991 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0071704 GO:0071944 GO:0098542 GO:1901981 GO:1902936 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

69

Amino Acids

7.73

Weight (kDa)

4.05

Isoelectric Point (pI)

36.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11830 AT4G11830 AT4G11830 AT4G11830 AT4G11840 AT4G11840 AT4G11850
fragaria_vesca	FvH4_5g01274 FvH4_5g01290 FvH4_5g01290 FvH4_5g01290
malus_domestica	MD04G1069600.v1.1
prunus_persica	Prupe.5G088300_v2.0.a1 Prupe.5G088300_v2.0.a1
pyrus_communis	pycom04g06330
rosa_chinensis	RchiOBHm_Chr4g0413221 RchiOBHm_Chr7g0199651 RchiOBHm_Chr7g0199691 RchiOBHm_Chr7g0199711 RchiOBHm_Chr7g0199731
rosa_laevigata	RLG00000003775 RLG00000003776 RLG00000003777 RLG00000003778 RLG00000003779
rosa_multiflora	Rmu_co8400099.1_g000001 Rmu_sc0002748.1_g000025 Rmu_sc0002748.1_g000027 Rmu_sc0002748.1_g000028 Rmu_sc0009191.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256480 Rroxscaffold_3G00256490 Rroxscaffold_3G00256520
rosa_rugosa	Rorug07G0055600 Rorug07G0055800 Rorug07G0055900
rosa_samantha	Rh7AG180700 Rh7AG181000 Rh7AG181200 Rh7BG183600 Rh7BG183900 Rh7BG184100 Rh7CG190400 Rh7CG190600 Rh7CG190700 Rh7DG183600 Rh7DG183800
rosa_wichuraiana	Rw7G015870 Rw7G015880 Rw7G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	74, 83
AgsI	TTSAA	1 cut(s)	188
AlwI	GGATC	2 cut(s)	74, 83
BccI	CCATC	1 cut(s)	134
BfmI	CTRYAG	1 cut(s)	206
BmrI	ACTGGG	1 cut(s)	124
BmuI	ACTGGG	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	119
BseGI	GGATG	1 cut(s)	124
BseNI	ACTGG	1 cut(s)	119
Bsp143I	GATC	2 cut(s)	79, 88
BspHI	TCATGA	1 cut(s)	42
BspPI	GGATC	2 cut(s)	74, 83
BsrI	ACTGG	1 cut(s)	119
BssMI	GATC	2 cut(s)	79, 88
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	2 cut(s)	82, 91
BstMBI	GATC	2 cut(s)	79, 88
BstSFI	CTRYAG	1 cut(s)	206
BtsCI	GGATG	1 cut(s)	124
CciI	TCATGA	1 cut(s)	42
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	3 cut(s)	53, 74, 144
CviKI_1	RGCY	3 cut(s)	53, 74, 144
DpnI	GATC	2 cut(s)	81, 90
DpnII	GATC	2 cut(s)	79, 88
FaeI	CATG	1 cut(s)	46
FaiI	YATR	8 cut(s)	44, 78, 94, 96, 104, 182, 197, 208
FatI	CATG	1 cut(s)	42
FauNDI	CATATG	1 cut(s)	94
FokI	GGATG	1 cut(s)	131
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	1 cut(s)	133
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	2 cut(s)	43, 137
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	1 cut(s)	29
HpySE526I	ACGT	1 cut(s)	161
Hsp92II	CATG	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	79, 88
LmnI	GCTCC	1 cut(s)	99
LpnPI	CCDG	2 cut(s)	100, 150
MaeII	ACGT	1 cut(s)	161
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	2 cut(s)	81, 90
MboI	GATC	2 cut(s)	79, 88
MluCI	AATT	1 cut(s)	183
MlyI	GAGTC	1 cut(s)	127
MseI	TTAA	1 cut(s)	177
NdeI	CATATG	1 cut(s)	94
NdeII	GATC	2 cut(s)	79, 88
NlaIII	CATG	1 cut(s)	46
PagI	TCATGA	1 cut(s)	42
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
SaqAI	TTAA	1 cut(s)	177
Sau3AI	GATC	2 cut(s)	79, 88
SchI	GAGTC	1 cut(s)	127
SetI	ASST	1 cut(s)	164
SfcI	CTRYAG	1 cut(s)	206
SgeI	CNNG	5 cut(s)	55, 127, 141, 149, 184
Sse9I	AATT	1 cut(s)	183
TaiI	ACGT	1 cut(s)	164
TasI	AATT	1 cut(s)	183
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.