Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001557

Physical Location & Seq

Genomic Coordinates Reverse (-)

17049338 .. 17057013

Gene Structure 7676 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG183600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2562 bp

ATGGCTAGGCGTTACGCAGAATCGTTGTCGTTTGGAGCGTTGTCGTTTGGAGGGTCGGGACATATTCAGGGACAACAACTTGTGCCGTTTCGGACAGGCAGTGTGTCTCGGAAGCTTGAGCTACTCCATGGGAACTTGGTTATATTGGTCAAAGAGGCCAAAAACCTTCCAAACATGGATGCGTTTCACAAGACTCTGGGGGATATTGTTGCAAGATTGCCTGGGACTGGTAACAACAAGATAACGAGTGATCCGTATGTCACGGTGTCGGTTGCAGGTGCTGTAGTTGGGAGGACTTTTGTGATCAGTAATAGTGAGAACCCTGTTTGGGAGCAACATTTTGATGTTCCGGTTGCGCATTATGCTTCAGAAGTGCAATTTGTTGTGAAAGATAGTGATGTTGTGGGTTCCCAGCTCATAGGTGTTGTAGCAATCCCAGTTGAGCGGGTATATTCTGGGATCAAAGTTGAGGGCACCTTTCCAATCCTTGGTTCCAATGGCAAGCCCTGTAAGCCTGGAGCTGTTTTGACCTTATCGATTCTCTATGTTCCTATTGAAAAATTGACCTCTTATGATAATGGGGTAGGTTCAGATCCTGATCATCAAGGGGTTCCTGGTACTTACTTTCCTGTTAGGAAAGGCGGTAAGGTTACTCTGTATCAAGATGCCCATGTTCCTGATGGTTGCCTTCCAAGTATCAAGCTTGACGACAATGTTGAGTATGAGCATGGGAGTTGTTGGCAAGACATATTTGATGCAATTAGTCAGGCCCGCCGTTTGATATACATTGTGGGGTGGTCGGTGTACCACAAAGTTAGGTTGCTACGGGATAATAATGGCAGAACAGATTGCATACTAGGGGATCTTCTTAAGAACAAGTCACAGGAAGGTGTGAGAGTGTTGCTTCTTGTTTGGGATGATCCAACTTCAAGGAGCATTATGGGATATAAAACGGATGGAATTATGCAAACCAATGATGAGGAAACTCGCCGTTTCTTTAAGCATTCTTCAGTCCAAGTGCTACTTTGCCCTCGATCAGCCGGAAAGGGTAGCTGGGCCAAAAAGCAGGAAGTCGGAACAATCTACACCCACCATCAGAAAACAGTGCTTGTTGATGCTGATGCAGGTCATTCTAAAAGAAAGATCATTGCATTTGTTGGTGGTCTTGATTTGTGCCTGGGGCGCTACGATACTCCAGAGCATCCTATTTTTAGGACTTTACAGACAGTCCACAAGGATGACAATCGTAACCCTACTTTTTCGGACCGTGTTGTTGGTTGTCCAAGGCAGCCATGGCATGATTTGCACAGTAAAATTGAGGGTCCGGCAGCATACGATATCCTTACCAATTTTCAGGAGCGTTGGTTAAAAGCTTCAAAACCACGTGGGATGCAGAAACTAAAAGCACTACATGATGATGCATTACTCAAGATTGAGAGGATCCCGGAAATTATGGGGATGGCAGATCTTCCTCAACTGAGTGAGGATGATTTAGAAGCTTGGGATGTTCAGGTTTTTCGTTCAATTGATTCCAATTCTGTAAGAGGATTTCCAGAAGACCCAAAAGATGCTTCACGCATGAACCTGGTGTGTGGGAAGAATGTGCTGATAGACATGAGTATACATGCCGCATATGTCAAAGCAATTCGCGCTGCTCAACATTTCATTTACATAGAGAACCAGTACTTCCTTGGATCATCATATAATTGGACCTTATACAATGATTTAGGTGCAAATAACTTGATACCAATGGAAATTGCTCTCAAAATTGTGAATAAAATTAAAGCAAACGAGAGGTTTTCTGTATATGTTGTTATCCCCATGTGGCCGGAAGGTGTTCCTACAAGCAGTCCTCTTCAACGAATTCTCTGTTGGCAGCACAAAACGATGCAAATGATGTATGAAATGATTTACAAAGCTCTACAGGAGGCTGGACTTCACAATAAATATTGTCCACAAGACTATTTGAATTTCTTTTGCCTCGGTAATCGTGAAAAACCAAGTGGTGAAGAAAGTTCTGCTGCAAAAAAATCAACTGAAGCAAACAAAAAAGAAGCAAACACTCCTCAAGCACTCACTCGGAAGAACCGGCGCTTTATGATTTATGTCCATTCAAAAGGAATGATAGTGGACGATGAATATGTTATATTAGGATCTGCAAATATCAATCAGCGATCCATGGAAGGTACGCGAGATACTGAAATAGCAATGGGGGCATATCAGCCTCATCATACCTGGGCAAGGAAACTCTCAAGTCCACACGGACAGATATATGGATATAGAACATCACTTTGGGCGGAGCATATTGGTTTTCTTGAAGACTCCTTCAACCAACCAGAGAGTCTCGAATGTGTGCAGCGGGTAAGATCTTTGAGCGAGCAGAACTGGAGGCAGTATGTTGCTGATGAGATTACAGAAATGAAGGGCCACCTGCTGAAATATCCGGTTGAAGTAGATCAAATGGGCAAGGTGAAGCATCTTGCAGGCTGCACAACATTTCCAGATGTTGGTGGCAACATACTTGGGGATTTTATAGCCATCCAAGAAAATCTCACTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006629 GO:0006643 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008289 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009816 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0022626 GO:0030054 GO:0032501 GO:0032502 GO:0032991 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0071704 GO:0071944 GO:0098542 GO:1901981 GO:1902936 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

853

Amino Acids

95.78

Weight (kDa)

7.17

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	44 - 161	2.7e-16	C2 domain
PLDc_2	PF13091	677 - 737	9.5e-07	PLD-like domain
PLDc	PF00614	701 - 726	8.2e-08	Phospholipase D Active site motif
PLD_C	PF12357	773 - 843	2.7e-30	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11830 AT4G11830 AT4G11830 AT4G11830 AT4G11840 AT4G11840 AT4G11850
fragaria_vesca	FvH4_5g01274 FvH4_5g01290 FvH4_5g01290 FvH4_5g01290
malus_domestica	MD04G1069600.v1.1
prunus_persica	Prupe.5G088300_v2.0.a1 Prupe.5G088300_v2.0.a1
pyrus_communis	pycom04g06330
rosa_chinensis	RchiOBHm_Chr4g0413221 RchiOBHm_Chr7g0199651 RchiOBHm_Chr7g0199691 RchiOBHm_Chr7g0199711 RchiOBHm_Chr7g0199731
rosa_laevigata	RLG00000003775 RLG00000003776 RLG00000003777 RLG00000003778 RLG00000003779
rosa_multiflora	Rmu_co8400099.1_g000001 Rmu_sc0002748.1_g000025 Rmu_sc0002748.1_g000027 Rmu_sc0002748.1_g000028 Rmu_sc0009191.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256480 Rroxscaffold_3G00256490 Rroxscaffold_3G00256520
rosa_rugosa	Rorug07G0055600 Rorug07G0055800 Rorug07G0055900
rosa_samantha	Rh7AG180700 Rh7AG181000 Rh7AG181200 Rh7BG183600 Rh7BG183900 Rh7BG184100 Rh7CG190400 Rh7CG190600 Rh7CG190700 Rh7DG183600 Rh7DG183800
rosa_wichuraiana	Rw7G015870 Rw7G015880 Rw7G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	266, 2439
Acc16I	TGCGCA	1 cut(s)	357
Acc36I	ACCTGC	3 cut(s)	266, 1115, 2439
AccB1I	GGYRCC	1 cut(s)	473
AccB7I	CCANNNNNTGG	2 cut(s)	488, 2507
AccBSI	CCGCTC	1 cut(s)	445
AccI	GTMKAC	1 cut(s)	1621
AccII	CGCG	2 cut(s)	1650, 2191
AciI	CCGC	6 cut(s)	445, 642, 772, 1629, 2297, 2359
AcoI	YGGCCR	1 cut(s)	1826
AcsI	RAATTY	2 cut(s)	1863, 1969
AcuI	CTGAAG	3 cut(s)	351, 993, 2058
AcvI	CACGTG	1 cut(s)	1385
AfaI	GTAC	4 cut(s)	619, 806, 1685, 2188
AfiI	CCNNNNNNNGG	5 cut(s)	227, 328, 488, 2241, 2507
AflII	CTTAAG	1 cut(s)	869
AjnI	CCWGG	6 cut(s)	220, 514, 613, 1176, 1584, 2234
AjuI	GAANNNNNNNTTGG	8 cut(s)	475, 507, 1555, 1587, 1855, 1887, 2275, 2307
AluBI	AGCT	9 cut(s)	115, 121, 415, 521, 703, 1053, 1373, 1499, 1919
AluI	AGCT	9 cut(s)	115, 121, 415, 521, 703, 1053, 1373, 1499, 1919
Alw26I	GTCTC	2 cut(s)	111, 2348
AlwNI	CAGNNNCTG	2 cut(s)	281, 596
AoxI	GGCC	5 cut(s)	156, 768, 1056, 1826, 2425
ApeKI	GCWGC	7 cut(s)	1288, 1328, 1652, 1876, 2021, 2356, 2487
ApoI	RAATTY	2 cut(s)	1863, 1969
Asp700I	GAANNNNTTC	1 cut(s)	1836
AspLEI	GCGC	4 cut(s)	358, 1185, 1652, 2094
AspS9I	GGNCC	6 cut(s)	769, 1056, 1264, 1322, 1710, 2425
AsuC2I	CCSGG	1 cut(s)	1445
AsuHPI	GGTGA	2 cut(s)	2018, 2482
AvaII	GGWCC	3 cut(s)	1264, 1322, 1710
BaeGI	GKGCMC	1 cut(s)	476
BamHI	GGATCC	1 cut(s)	1440
BanI	GGYRCC	1 cut(s)	473
BbrPI	CACGTG	1 cut(s)	1385
BbsI	GAAGAC	2 cut(s)	1563, 2325
BbvI	GCAGC	7 cut(s)	1300, 1340, 1639, 1888, 2008, 2368, 2474
BccI	CCATC	5 cut(s)	674, 950, 1101, 1453, 2546
BceAI	ACGGC	3 cut(s)	70, 759, 975
BciT130I	CCWGG	6 cut(s)	222, 516, 615, 1178, 1586, 2236
BclI	TGATCA	2 cut(s)	303, 598
BcnI	CCSGG	1 cut(s)	1445
BcoDI	GTCTC	2 cut(s)	111, 2348
BfaI	CTAG	2 cut(s)	6, 857
BfmI	CTRYAG	2 cut(s)	282, 1922
BfoI	RGCGCY	2 cut(s)	1186, 2095
BfrI	CTTAAG	1 cut(s)	869
BfuAI	ACCTGC	3 cut(s)	266, 1115, 2439
BglII	AGATCT	2 cut(s)	1465, 2366
BisI	GCNGC	8 cut(s)	1289, 1329, 1629, 1653, 1877, 2022, 2357, 2488
BlsI	GCNGC	8 cut(s)	1290, 1330, 1630, 1654, 1878, 2023, 2358, 2489
BmcAI	AGTACT	1 cut(s)	1685
Bme1390I	CCNGG	7 cut(s)	222, 516, 615, 1178, 1445, 1586, 2236
Bme18I	GGWCC	3 cut(s)	1264, 1322, 1710
BmgT120I	GGNCC	6 cut(s)	769, 1056, 1264, 1322, 1710, 2425
BmiI	GGNNCC	6 cut(s)	409, 475, 493, 612, 1323, 1442
BmrFI	CCNGG	7 cut(s)	222, 516, 615, 1178, 1445, 1586, 2236
BmrI	ACTGGG	1 cut(s)	431
BmuI	ACTGGG	1 cut(s)	431
BpiI	GAAGAC	2 cut(s)	1563, 2325
BpmI	CTGGAG	3 cut(s)	537, 1179, 2407
BpuEI	CTTGAG	4 cut(s)	137, 1412, 2052, 2236
BpuMI	CCSGG	1 cut(s)	1445
Bsa29I	ATCGAT	1 cut(s)	536
BsaAI	YACGTR	1 cut(s)	1385
BsaBI	GATNNNNATC	2 cut(s)	597, 1242
BsaWI	WCCGGW	2 cut(s)	349, 2443
BsaXI	ACNNNNNCTCC	2 cut(s)	1349, 1379
Bsc4I	CCNNNNNNNGG	5 cut(s)	227, 328, 488, 2241, 2507
Bse118I	RCCGGY	1 cut(s)	2088
Bse1I	ACTGG	4 cut(s)	232, 437, 1681, 2390
Bse3DI	GCAATG	2 cut(s)	1146, 2214
Bse8I	GATNNNNATC	2 cut(s)	597, 1242
BseBI	CCWGG	6 cut(s)	222, 516, 615, 1178, 1586, 2236
BseCI	ATCGAT	1 cut(s)	536
BseJI	GATNNNNATC	2 cut(s)	597, 1242
BseLI	CCNNNNNNNGG	5 cut(s)	227, 328, 488, 2241, 2507
BseMI	GCAATG	2 cut(s)	1146, 2214
BseMII	CTCAG	1 cut(s)	1469
BseNI	ACTGG	4 cut(s)	232, 437, 1681, 2390
BseRI	GAGGAG	1 cut(s)	2055
BseSI	GKGCMC	1 cut(s)	476
BseXI	GCAGC	7 cut(s)	1300, 1340, 1639, 1888, 2008, 2368, 2474
BseYI	CCCAGC	2 cut(s)	411, 1053
BsgI	GTGCAG	2 cut(s)	2375, 2473
Bsh1236I	CGCG	2 cut(s)	1650, 2191
BshFI	GGCC	5 cut(s)	158, 770, 1058, 1828, 2427
BshNI	GGYRCC	1 cut(s)	473
BshVI	ATCGAT	1 cut(s)	536
BsiSI	CCGG	7 cut(s)	350, 1041, 1325, 1445, 1829, 2089, 2444
BslFI	GGGAC	3 cut(s)	72, 84, 238
BslI	CCNNNNNNNGG	5 cut(s)	227, 328, 488, 2241, 2507
BsmAI	GTCTC	2 cut(s)	111, 2348
BsmFI	GGGAC	3 cut(s)	72, 84, 238
BsmI	GAATGC	1 cut(s)	1003
BsnI	GGCC	5 cut(s)	158, 770, 1058, 1828, 2427
Bsp1286I	GDGCHC	1 cut(s)	476
Bsp19I	CCATGG	3 cut(s)	127, 1292, 2178
BspACI	CCGC	6 cut(s)	445, 642, 772, 1629, 2297, 2359
BspANI	GGCC	5 cut(s)	158, 770, 1058, 1828, 2427
BspCNI	CTCAG	1 cut(s)	1470
BspDI	ATCGAT	1 cut(s)	536
BspFNI	CGCG	2 cut(s)	1650, 2191
BspLI	GGNNCC	6 cut(s)	409, 475, 493, 612, 1323, 1442
BspMI	ACCTGC	3 cut(s)	266, 1115, 2439
BspT107I	GGYRCC	1 cut(s)	473
BspTI	CTTAAG	1 cut(s)	869
BsrBI	CCGCTC	1 cut(s)	445
BsrDI	GCAATG	2 cut(s)	1146, 2214
BsrFI	RCCGGY	1 cut(s)	2088
BsrI	ACTGG	4 cut(s)	232, 437, 1681, 2390
BssAI	RCCGGY	1 cut(s)	2088
BssNAI	GTATAC	1 cut(s)	1622
BssT1I	CCWWGG	6 cut(s)	127, 487, 1283, 1292, 1690, 2178
Bst1107I	GTATAC	1 cut(s)	1622
Bst2UI	CCWGG	6 cut(s)	222, 516, 615, 1178, 1586, 2236
Bst4CI	ACNGT	5 cut(s)	265, 1105, 1228, 1268, 1310
Bst6I	CTCTTC	1 cut(s)	1860
BstAFI	CTTAAG	1 cut(s)	869
BstAPI	GCANNNNNTGC	1 cut(s)	1303
BstBAI	YACGTR	1 cut(s)	1385
BstC8I	GCNNGC	4 cut(s)	503, 772, 2378, 2485
BstDEI	CTNAG	1 cut(s)	1478
BstDSI	CCRYGG	3 cut(s)	127, 1292, 2178
BstENI	CCTNNNNNAGG	1 cut(s)	2239
BstFNI	CGCG	2 cut(s)	1650, 2191
BstH2I	RGCGCY	2 cut(s)	1186, 2095
BstHHI	GCGC	4 cut(s)	358, 1185, 1652, 2094
BstMAI	GTCTC	2 cut(s)	111, 2348
BstMWI	GCNNNNNNNGC	7 cut(s)	362, 511, 1182, 1294, 1303, 1649, 2213
BstNI	CCWGG	6 cut(s)	222, 516, 615, 1178, 1586, 2236
BstNSI	RCATGY	1 cut(s)	1628
BstSCI	CCNGG	7 cut(s)	220, 514, 613, 1176, 1443, 1584, 2234
BstSFI	CTRYAG	2 cut(s)	282, 1922
BstSLI	GKGCMC	1 cut(s)	476
BstUI	CGCG	2 cut(s)	1650, 2191
BstV1I	GCAGC	7 cut(s)	1300, 1340, 1639, 1888, 2008, 2368, 2474
BstV2I	GAAGAC	2 cut(s)	1563, 2325
BstX2I	RGATCY	6 cut(s)	592, 862, 1440, 1465, 2153, 2366
BstYI	RGATCY	6 cut(s)	592, 862, 1440, 1465, 2153, 2366
BstZ17I	GTATAC	1 cut(s)	1622
Bsu15I	ATCGAT	1 cut(s)	536
BsuRI	GGCC	5 cut(s)	158, 770, 1058, 1828, 2427
BsuTUI	ATCGAT	1 cut(s)	536
BtgI	CCRYGG	3 cut(s)	127, 1292, 2178
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	2 cut(s)	106, 1110
BveI	ACCTGC	3 cut(s)	266, 1115, 2439
Cac8I	GCNNGC	4 cut(s)	503, 772, 2378, 2485
CaiI	CAGNNNCTG	2 cut(s)	281, 596
CfoI	GCGC	4 cut(s)	358, 1185, 1652, 2094
Cfr10I	RCCGGY	1 cut(s)	2088
Cfr13I	GGNCC	6 cut(s)	769, 1056, 1264, 1322, 1710, 2425
ClaI	ATCGAT	1 cut(s)	536
CpoI	CGGWCCG	1 cut(s)	1264
CsiI	ACCWGGT	1 cut(s)	1584
Csp6I	GTAC	4 cut(s)	618, 805, 1684, 2187
CspI	CGGWCCG	1 cut(s)	1264
CviQI	GTAC	4 cut(s)	618, 805, 1684, 2187
DdeI	CTNAG	1 cut(s)	1478
EaeI	YGGCCR	1 cut(s)	1826
Eam1104I	CTCTTC	1 cut(s)	1860
EarI	CTCTTC	1 cut(s)	1860
EciI	GGCGGA	1 cut(s)	2312
Eco130I	CCWWGG	6 cut(s)	127, 487, 1283, 1292, 1690, 2178
Eco32I	GATATC	1 cut(s)	1339
Eco47I	GGWCC	3 cut(s)	1264, 1322, 1710
Eco57I	CTGAAG	3 cut(s)	351, 993, 2058
Eco72I	CACGTG	1 cut(s)	1385
EcoNI	CCTNNNNNAGG	1 cut(s)	2239
EcoRI	GAATTC	1 cut(s)	1863
EcoRII	CCWGG	6 cut(s)	220, 514, 613, 1176, 1584, 2234
EcoRV	GATATC	1 cut(s)	1339
EcoT14I	CCWWGG	6 cut(s)	127, 487, 1283, 1292, 1690, 2178
EcoT22I	ATGCAT	1 cut(s)	1423
ErhI	CCWWGG	6 cut(s)	127, 487, 1283, 1292, 1690, 2178
FalI	AAGNNNNNCTT	2 cut(s)	1008, 1040
FaqI	GGGAC	3 cut(s)	72, 84, 238
FauI	CCCGC	3 cut(s)	438, 779, 2352
FauNDI	CATATG	1 cut(s)	1633
FbaI	TGATCA	2 cut(s)	303, 598
FblI	GTMKAC	1 cut(s)	1621
Fnu4HI	GCNGC	8 cut(s)	1289, 1329, 1629, 1653, 1877, 2022, 2357, 2488
Fsp4HI	GCNGC	8 cut(s)	1289, 1329, 1629, 1653, 1877, 2022, 2357, 2488
FspBI	CTAG	2 cut(s)	6, 857
FspI	TGCGCA	1 cut(s)	357
GlaI	GCGC	4 cut(s)	357, 1184, 1651, 2093
GluI	GCNGC	8 cut(s)	1289, 1329, 1629, 1653, 1877, 2022, 2357, 2488
GsaI	CCCAGC	2 cut(s)	415, 1057
GsuI	CTGGAG	3 cut(s)	537, 1179, 2407
HaeII	RGCGCY	2 cut(s)	1186, 2095
HaeIII	GGCC	5 cut(s)	158, 770, 1058, 1828, 2427
HapII	CCGG	7 cut(s)	350, 1041, 1325, 1445, 1829, 2089, 2444
HhaI	GCGC	4 cut(s)	358, 1185, 1652, 2094
Hin6I	GCGC	4 cut(s)	356, 1183, 1650, 2092
HinP1I	GCGC	4 cut(s)	356, 1183, 1650, 2092
HindIII	AAGCTT	4 cut(s)	113, 701, 1371, 1497
HinfI	GANTC	6 cut(s)	20, 193, 538, 1529, 2321, 2341
HpaII	CCGG	7 cut(s)	350, 1041, 1325, 1445, 1829, 2089, 2444
HphI	GGTGA	2 cut(s)	2018, 2482
Hpy166II	GTNNAC	6 cut(s)	805, 1231, 1622, 1955, 2131, 2258
Hpy188I	TCNGA	9 cut(s)	93, 111, 370, 592, 1076, 1098, 1264, 2082, 2561
Hpy8I	GTNNAC	6 cut(s)	805, 1231, 1622, 1955, 2131, 2258
HpyAV	CCTTC	7 cut(s)	176, 698, 881, 1826, 2177, 2335, 2416
HpyCH4III	ACNGT	5 cut(s)	265, 1105, 1228, 1268, 1310
HpyCH4IV	ACGT	1 cut(s)	1384
HpyF10VI	GCNNNNNNNGC	7 cut(s)	362, 511, 1182, 1294, 1303, 1649, 2213
HpyF3I	CTNAG	1 cut(s)	1478
HpySE526I	ACGT	1 cut(s)	1384
HspAI	GCGC	4 cut(s)	356, 1183, 1650, 2092
Ksp22I	TGATCA	2 cut(s)	303, 598
LmnI	GCTCC	6 cut(s)	35, 331, 518, 933, 1357, 2299
Lsp1109I	GCAGC	7 cut(s)	1300, 1340, 1639, 1888, 2008, 2368, 2474
MabI	ACCWGGT	1 cut(s)	1584
MaeI	CTAG	2 cut(s)	6, 857
MaeII	ACGT	1 cut(s)	1384
MaeIII	GTNAC	6 cut(s)	11, 230, 259, 649, 879, 1247
MbiI	CCGCTC	1 cut(s)	445
MboII	GAAGA	9 cut(s)	857, 999, 1460, 1568, 1609, 1847, 2021, 2095, 2330
MfeI	CAATTG	1 cut(s)	1524
MflI	RGATCY	6 cut(s)	592, 862, 1440, 1465, 2153, 2366
MhlI	GDGCHC	1 cut(s)	476
MlyI	GAGTC	3 cut(s)	187, 2315, 2350
MmeI	TCCRAC	2 cut(s)	947, 1054
Mph1103I	ATGCAT	1 cut(s)	1423
MroXI	GAANNNNTTC	1 cut(s)	1836
MseI	TTAA	4 cut(s)	870, 999, 1367, 1782
MslI	CAYNNNNRTG	3 cut(s)	342, 1236, 1416
MspA1I	CMGCKG	1 cut(s)	2359
MspCI	CTTAAG	1 cut(s)	869
MspI	CCGG	7 cut(s)	350, 1041, 1325, 1445, 1829, 2089, 2444
MspR9I	CCNGG	7 cut(s)	222, 516, 615, 1178, 1445, 1586, 2236
MunI	CAATTG	1 cut(s)	1524
Mva1269I	GAATGC	1 cut(s)	1003
MvaI	CCWGG	6 cut(s)	222, 516, 615, 1178, 1586, 2236
MvnI	CGCG	2 cut(s)	1650, 2191
MwoI	GCNNNNNNNGC	7 cut(s)	362, 511, 1182, 1294, 1303, 1649, 2213
NciI	CCSGG	1 cut(s)	1445
NcoI	CCATGG	3 cut(s)	127, 1292, 2178
NdeI	CATATG	1 cut(s)	1633
NlaIV	GGNNCC	6 cut(s)	409, 475, 493, 612, 1323, 1442
NmuCI	GTSAC	2 cut(s)	259, 879
NsbI	TGCGCA	1 cut(s)	357
NsiI	ATGCAT	1 cut(s)	1423
NspI	RCATGY	1 cut(s)	1628
PaqCI	CACCTGC	2 cut(s)	266, 2439
PcsI	WCGNNNNNNNCGW	2 cut(s)	35, 251
PctI	GAATGC	1 cut(s)	1003
PdmI	GAANNNNTTC	1 cut(s)	1836
PfeI	GAWTC	3 cut(s)	20, 538, 1529
PflMI	CCANNNNNTGG	2 cut(s)	488, 2507
PfoI	TCCNGGA	1 cut(s)	1443
PkrI	GCNGC	8 cut(s)	1290, 1330, 1630, 1654, 1878, 2023, 2358, 2489
PleI	GAGTC	3 cut(s)	187, 2315, 2349
PmaCI	CACGTG	1 cut(s)	1385
PmlI	CACGTG	1 cut(s)	1385
PpsI	GAGTC	3 cut(s)	187, 2315, 2349
Ppu21I	YACGTR	1 cut(s)	1385
Psp6I	CCWGG	6 cut(s)	220, 514, 613, 1176, 1584, 2234
PspCI	CACGTG	1 cut(s)	1385
PspFI	CCCAGC	2 cut(s)	411, 1053
PspGI	CCWGG	6 cut(s)	220, 514, 613, 1176, 1584, 2234
PspN4I	GGNNCC	6 cut(s)	409, 475, 493, 612, 1323, 1442
PspPI	GGNCC	6 cut(s)	769, 1056, 1264, 1322, 1710, 2425
PstNI	CAGNNNCTG	2 cut(s)	281, 596
PsuI	RGATCY	6 cut(s)	592, 862, 1440, 1465, 2153, 2366
RsaI	GTAC	4 cut(s)	619, 806, 1685, 2188
RsaNI	GTAC	4 cut(s)	618, 805, 1684, 2187
RseI	CAYNNNNRTG	3 cut(s)	342, 1236, 1416
Rsr2I	CGGWCCG	1 cut(s)	1264
RsrII	CGGWCCG	1 cut(s)	1264
SaqAI	TTAA	4 cut(s)	870, 999, 1367, 1782
SatI	GCNGC	8 cut(s)	1289, 1329, 1629, 1653, 1877, 2022, 2357, 2488
Sau96I	GGNCC	6 cut(s)	769, 1056, 1264, 1322, 1710, 2425
ScaI	AGTACT	1 cut(s)	1685
SchI	GAGTC	3 cut(s)	187, 2315, 2350
ScrFI	CCNGG	7 cut(s)	222, 516, 615, 1178, 1445, 1586, 2236
SduI	GDGCHC	1 cut(s)	476
SexAI	ACCWGGT	1 cut(s)	1584
SfcI	CTRYAG	2 cut(s)	282, 1922
SinI	GGWCC	3 cut(s)	1264, 1322, 1710
SmiMI	CAYNNNNRTG	3 cut(s)	342, 1236, 1416
SmlI	CTYRAG	5 cut(s)	116, 869, 1427, 2067, 2251
SmoI	CTYRAG	5 cut(s)	116, 869, 1427, 2067, 2251
SsiI	CCGC	6 cut(s)	445, 642, 772, 1629, 2297, 2359
SspI	AATATT	1 cut(s)	1949
SspMI	CTAG	2 cut(s)	6, 857
StyD4I	CCNGG	7 cut(s)	220, 514, 613, 1176, 1443, 1584, 2234
StyI	CCWWGG	6 cut(s)	127, 487, 1283, 1292, 1690, 2178
TaaI	ACNGT	5 cut(s)	265, 1105, 1228, 1268, 1310
TaiI	ACGT	1 cut(s)	1387
TaqI	TCGA	3 cut(s)	536, 1033, 2346
TatI	WGTACW	1 cut(s)	1683
TauI	GCSGC	1 cut(s)	1631
TfiI	GAWTC	3 cut(s)	20, 538, 1529
Tru1I	TTAA	4 cut(s)	870, 999, 1367, 1782
Tru9I	TTAA	4 cut(s)	870, 999, 1367, 1782
TscAI	CASTG	2 cut(s)	106, 1110
TseFI	GTSAC	2 cut(s)	259, 879
TseI	GCWGC	7 cut(s)	1288, 1328, 1652, 1876, 2021, 2356, 2487
Tsp45I	GTSAC	2 cut(s)	259, 879
TspDTI	ATGAA	5 cut(s)	1595, 1654, 1917, 2151, 2435
TspGWI	ACGGA	3 cut(s)	243, 968, 2277
TspRI	CASTG	2 cut(s)	106, 1110
Van91I	CCANNNNNTGG	2 cut(s)	488, 2507
Vha464I	CTTAAG	1 cut(s)	869
VpaK11BI	GGWCC	3 cut(s)	1264, 1322, 1710
XagI	CCTNNNNNAGG	1 cut(s)	2239
XapI	RAATTY	2 cut(s)	1863, 1969
XceI	RCATGY	1 cut(s)	1628
XcmI	CCANNNNNNNNNTGG	3 cut(s)	677, 1290, 1688
XmiI	GTMKAC	1 cut(s)	1621
XmnI	GAANNNNTTC	1 cut(s)	1836
XspI	CTAG	2 cut(s)	6, 857
ZrmI	AGTACT	1 cut(s)	1685
Zsp2I	ATGCAT	1 cut(s)	1423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.