Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001557

Physical Location & Seq

Genomic Coordinates Reverse (-)

17751018 .. 17752877

Gene Structure 1860 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17875

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCTAATCCTACTTACCAGGAATCCTTGTCATTTGGAGGCCCAGACCATCCTCAGGGTCAAGAAGTTATTCCATTTGAGAGTGGAACCCTGAAGATTTTGCTACATGGCTCCCTAGTCATATGGGTCAAGAAGGCCGAAAACCTTCCTGACATGGAGAGTTTTCGCAAGCATGTGGGGCATGCAATTGCGAAGTTGCCTGGGACGAGACGCAAAAATATTATCAGTTCTCCATATGTTACGATTTCTTTATCAAATGCTGTGATTGGGAGGACCTTTGTGATGAGTAGTACAGAGAACCCTGTGTGGGAGCAACATTTTGATGTTCCTGTTGCTCATTATGCTTCACGAGTGAACTTTGTTGTGAAACACAGTGATGTTTTCGGCTCTAAGACCATAGGTTTTGTTGGAATCTCAGCTCAACAGTTGTACTCTGGCATCAAAGTTGAGGGAACCTTCCCTATCCTTGACACTACCAGTGGTAAAAGCTGTATGCCTGGAGCTGTGTTGAGCTTGTCAATTCAGTACACCGCGATTGAAAAAATGGCATTTTATAATCGCGGAGTAGGTTTAGATCCTGATCATCAAGGGGTCCCTGGTACTTACTTTCCTGTTAGGAAAGGCGGTAAAGTTACTCTTTATCAAGATGCTCATGTTCCTGATGGTTGCCTCCCCAACTTCAAGCTTGACGGCGGTCTTAAGTACGAGCATGGAAATTGTTGGCAAGACATATTTGATGCAATAAGTCAGGCCCGCCGTTTGATATACATAGCTGGGTGGTCACTGCACCCCAAAGTCAGATTGCTTCGGAATAATAATGGTTCATCAGATAGCACATTAGGTGATCTGCTGAAGACCAAGTCACAGGAAGGTGTGAAAGTTCTGCTTCTTGTTTGGGACGATCCAACTTCTATTAAGGGAATTAAAATGAAAATTTCCTTCAATATATACCCCTTTCAGAGTTCAAGCTTCAAACCTAATTTAGATATGGAGGTTTCCTCCGTTCATCTCTCTTTCTCCATCTGCAGACCAAAACAAGATATAGTTTTTCTCCCCTCCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006629 GO:0006643 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008289 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009816 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0022626 GO:0030054 GO:0032501 GO:0032502 GO:0032991 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0071704 GO:0071944 GO:0098542 GO:1901981 GO:1902936 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

354

Amino Acids

39.13

Weight (kDa)

8.98

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	37 - 154	1.2e-13	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11830 AT4G11830 AT4G11830 AT4G11830 AT4G11840 AT4G11840 AT4G11850
fragaria_vesca	FvH4_5g01274 FvH4_5g01290 FvH4_5g01290 FvH4_5g01290
malus_domestica	MD04G1069600.v1.1
prunus_persica	Prupe.5G088300_v2.0.a1 Prupe.5G088300_v2.0.a1
pyrus_communis	pycom04g06330
rosa_chinensis	RchiOBHm_Chr4g0413221 RchiOBHm_Chr7g0199651 RchiOBHm_Chr7g0199691 RchiOBHm_Chr7g0199711 RchiOBHm_Chr7g0199731
rosa_laevigata	RLG00000003775 RLG00000003776 RLG00000003777 RLG00000003778 RLG00000003779
rosa_multiflora	Rmu_co8400099.1_g000001 Rmu_sc0002748.1_g000025 Rmu_sc0002748.1_g000027 Rmu_sc0002748.1_g000028 Rmu_sc0009191.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256480 Rroxscaffold_3G00256490 Rroxscaffold_3G00256520
rosa_rugosa	Rorug07G0055600 Rorug07G0055800 Rorug07G0055900
rosa_samantha	Rh7AG180700 Rh7AG181000 Rh7AG181200 Rh7BG183600 Rh7BG183900 Rh7BG184100 Rh7CG190400 Rh7CG190600 Rh7CG190700 Rh7DG183600 Rh7DG183800
rosa_wichuraiana	Rw7G015870 Rw7G015880 Rw7G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	555
AccII	CGCG	2 cut(s)	533, 561
AciI	CCGC	5 cut(s)	531, 561, 624, 693, 754
AclWI	GGATC	2 cut(s)	569, 896
AcsI	RAATTY	1 cut(s)	933
AcuI	CTGAAG	2 cut(s)	113, 872
AfaI	GTAC	5 cut(s)	292, 431, 527, 601, 704
AfiI	CCNNNNNNNGG	2 cut(s)	55, 307
AflII	CTTAAG	1 cut(s)	698
AgsI	TTSAA	5 cut(s)	539, 682, 943, 966, 973
AjnI	CCWGG	4 cut(s)	18, 199, 496, 595
AluBI	AGCT	7 cut(s)	419, 489, 503, 513, 685, 773, 969
AluI	AGCT	7 cut(s)	419, 489, 503, 513, 685, 773, 969
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	2 cut(s)	569, 896
AoxI	GGCC	3 cut(s)	40, 135, 750
ApoI	RAATTY	1 cut(s)	933
Asp700I	GAANNNNTTC	2 cut(s)	69, 144
AspS9I	GGNCC	4 cut(s)	41, 273, 592, 751
AsuHPI	GGTGA	1 cut(s)	854
AvaII	GGWCC	2 cut(s)	273, 592
AxyI	CCTNAGG	1 cut(s)	54
BauI	CACGAG	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	860
BccI	CCATC	3 cut(s)	57, 656, 1028
BceAI	ACGGC	2 cut(s)	706, 741
BciT130I	CCWGG	4 cut(s)	20, 201, 498, 597
BclI	TGATCA	1 cut(s)	580
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	1024
BfrI	CTTAAG	1 cut(s)	698
Bme1390I	CCNGG	4 cut(s)	20, 201, 498, 597
Bme18I	GGWCC	2 cut(s)	273, 592
BmgT120I	GGNCC	4 cut(s)	41, 273, 592, 751
BmiI	GGNNCC	5 cut(s)	88, 112, 454, 593, 594
BmrFI	CCNGG	4 cut(s)	20, 201, 498, 597
BmsI	GCATC	3 cut(s)	447, 637, 727
BoxI	GACNNNNGTC	1 cut(s)	693
BpiI	GAAGAC	1 cut(s)	860
BplI	GAGNNNNNCTC	2 cut(s)	983, 1015
BpmI	CTGGAG	1 cut(s)	519
BsaBI	GATNNNNATC	1 cut(s)	579
BsaJI	CCNNGG	2 cut(s)	200, 595
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 307
Bse1I	ACTGG	1 cut(s)	477
Bse21I	CCTNAGG	1 cut(s)	54
Bse8I	GATNNNNATC	1 cut(s)	579
BseBI	CCWGG	4 cut(s)	20, 201, 498, 597
BseDI	CCNNGG	2 cut(s)	200, 595
BseGI	GGATG	1 cut(s)	49
BseJI	GATNNNNATC	1 cut(s)	579
BseLI	CCNNNNNNNGG	2 cut(s)	55, 307
BseMII	CTCAG	2 cut(s)	68, 429
BseNI	ACTGG	1 cut(s)	477
BseYI	CCCAGC	1 cut(s)	773
BsgI	GTGCAG	1 cut(s)	770
Bsh1236I	CGCG	2 cut(s)	533, 561
BshFI	GGCC	3 cut(s)	42, 137, 752
BslFI	GGGAC	3 cut(s)	217, 578, 911
BslI	CCNNNNNNNGG	2 cut(s)	55, 307
BsmAI	GTCTC	1 cut(s)	202
BsmBI	CGTCTC	1 cut(s)	202
BsmFI	GGGAC	3 cut(s)	217, 578, 911
BsnI	GGCC	3 cut(s)	42, 137, 752
Bsp143I	GATC	4 cut(s)	574, 580, 844, 901
BspACI	CCGC	5 cut(s)	531, 561, 624, 693, 754
BspANI	GGCC	3 cut(s)	42, 137, 752
BspCNI	CTCAG	2 cut(s)	67, 428
BspFNI	CGCG	2 cut(s)	533, 561
BspLI	GGNNCC	5 cut(s)	88, 112, 454, 593, 594
BspMAI	CTGCAG	1 cut(s)	1028
BspPI	GGATC	2 cut(s)	569, 896
BspTI	CTTAAG	1 cut(s)	698
BsrI	ACTGG	1 cut(s)	477
BssECI	CCNNGG	2 cut(s)	200, 595
BssMI	GATC	4 cut(s)	574, 580, 844, 901
BssSI	CACGAG	1 cut(s)	348
Bst2BI	CACGAG	1 cut(s)	348
Bst2UI	CCWGG	4 cut(s)	20, 201, 498, 597
Bst4CI	ACNGT	2 cut(s)	374, 426
BstAFI	CTTAAG	1 cut(s)	698
BstC8I	GCNNGC	3 cut(s)	170, 183, 754
BstDEI	CTNAG	3 cut(s)	54, 390, 415
BstF5I	GGATG	1 cut(s)	49
BstFNI	CGCG	2 cut(s)	533, 561
BstKTI	GATC	4 cut(s)	577, 583, 847, 904
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	4 cut(s)	574, 580, 844, 901
BstMWI	GCNNNNNNNGC	2 cut(s)	178, 341
BstNI	CCWGG	4 cut(s)	20, 201, 498, 597
BstNSI	RCATGY	2 cut(s)	176, 185
BstPAI	GACNNNNGTC	1 cut(s)	693
BstSCI	CCNGG	4 cut(s)	18, 199, 496, 595
BstSFI	CTRYAG	1 cut(s)	1024
BstUI	CGCG	2 cut(s)	533, 561
BstV2I	GAAGAC	1 cut(s)	860
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
Bsu36I	CCTNAGG	1 cut(s)	54
BsuRI	GGCC	3 cut(s)	42, 137, 752
BtsCI	GGATG	1 cut(s)	49
BtsI	GCAGTG	1 cut(s)	782
BtsIMutI	CAGTG	3 cut(s)	379, 484, 782
Cac8I	GCNNGC	3 cut(s)	170, 183, 754
Cfr13I	GGNCC	4 cut(s)	41, 273, 592, 751
CseI	GACGC	1 cut(s)	219
Csp6I	GTAC	5 cut(s)	291, 430, 526, 600, 703
CviAII	CATG	6 cut(s)	107, 154, 173, 182, 653, 710
CviQI	GTAC	5 cut(s)	291, 430, 526, 600, 703
DdeI	CTNAG	3 cut(s)	54, 390, 415
DpnI	GATC	4 cut(s)	576, 582, 846, 903
DpnII	GATC	4 cut(s)	574, 580, 844, 901
Eco47I	GGWCC	2 cut(s)	273, 592
Eco57I	CTGAAG	2 cut(s)	113, 872
Eco81I	CCTNAGG	1 cut(s)	54
EcoO109I	RGGNCCY	2 cut(s)	273, 592
EcoRII	CCWGG	4 cut(s)	18, 199, 496, 595
Esp3I	CGTCTC	1 cut(s)	202
FaeI	CATG	6 cut(s)	110, 157, 176, 185, 656, 713
FalI	AAGNNNNNCTT	4 cut(s)	621, 653, 870, 902
FaqI	GGGAC	3 cut(s)	217, 578, 911
FatI	CATG	6 cut(s)	106, 153, 172, 181, 652, 709
FauI	CCCGC	1 cut(s)	761
FauNDI	CATATG	2 cut(s)	122, 235
FbaI	TGATCA	1 cut(s)	580
FokI	GGATG	1 cut(s)	36
FspBI	CTAG	1 cut(s)	116
GsaI	CCCAGC	1 cut(s)	777
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	3 cut(s)	42, 137, 752
HgaI	GACGC	1 cut(s)	219
Hin1II	CATG	6 cut(s)	110, 157, 176, 185, 656, 713
HindIII	AAGCTT	2 cut(s)	683, 967
HinfI	GANTC	2 cut(s)	23, 411
HphI	GGTGA	1 cut(s)	854
Hpy166II	GTNNAC	2 cut(s)	355, 528
Hpy188I	TCNGA	4 cut(s)	800, 810, 829, 960
Hpy188III	TCNNGA	7 cut(s)	62, 130, 149, 348, 578, 644, 659
Hpy8I	GTNNAC	2 cut(s)	355, 528
HpyAV	CCTTC	5 cut(s)	127, 155, 466, 863, 949
HpyCH4III	ACNGT	2 cut(s)	374, 426
HpyCH4V	TGCA	4 cut(s)	185, 740, 787, 1026
HpyF10VI	GCNNNNNNNGC	2 cut(s)	178, 341
HpyF3I	CTNAG	3 cut(s)	54, 390, 415
Hsp92II	CATG	6 cut(s)	110, 157, 176, 185, 656, 713
KflI	GGGWCCC	1 cut(s)	592
Ksp22I	TGATCA	1 cut(s)	580
Kzo9I	GATC	4 cut(s)	574, 580, 844, 901
LmnI	GCTCC	3 cut(s)	116, 310, 500
LweI	GCATC	3 cut(s)	447, 637, 727
MaeI	CTAG	1 cut(s)	116
MaeIII	GTNAC	4 cut(s)	238, 631, 780, 861
MalI	GATC	4 cut(s)	576, 582, 846, 903
MboI	GATC	4 cut(s)	574, 580, 844, 901
MboII	GAAGA	2 cut(s)	106, 865
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	1 cut(s)	574
MluCI	AATT	6 cut(s)	186, 519, 715, 921, 933, 979
MmeI	TCCRAC	2 cut(s)	388, 929
MnlI	CCTC	7 cut(s)	32, 63, 264, 442, 680, 985, 1009
MroXI	GAANNNNTTC	2 cut(s)	69, 144
MseI	TTAA	3 cut(s)	699, 915, 924
MslI	CAYNNNNRTG	2 cut(s)	321, 375
MspCI	CTTAAG	1 cut(s)	698
MspR9I	CCNGG	4 cut(s)	20, 201, 498, 597
MunI	CAATTG	1 cut(s)	186
MvaI	CCWGG	4 cut(s)	20, 201, 498, 597
MvnI	CGCG	2 cut(s)	533, 561
MwoI	GCNNNNNNNGC	2 cut(s)	178, 341
NdeI	CATATG	2 cut(s)	122, 235
NdeII	GATC	4 cut(s)	574, 580, 844, 901
NlaIII	CATG	6 cut(s)	110, 157, 176, 185, 656, 713
NlaIV	GGNNCC	5 cut(s)	88, 112, 454, 593, 594
NmuCI	GTSAC	2 cut(s)	780, 861
NspI	RCATGY	2 cut(s)	176, 185
PaeI	GCATGC	1 cut(s)	185
PdmI	GAANNNNTTC	2 cut(s)	69, 144
PfeI	GAWTC	2 cut(s)	23, 411
PflFI	GACNNNGTC	1 cut(s)	859
PpuMI	RGGWCCY	2 cut(s)	273, 592
PshAI	GACNNNNGTC	1 cut(s)	693
PsiI	TTATAA	1 cut(s)	555
Psp5II	RGGWCCY	2 cut(s)	273, 592
Psp6I	CCWGG	4 cut(s)	18, 199, 496, 595
PspFI	CCCAGC	1 cut(s)	773
PspGI	CCWGG	4 cut(s)	18, 199, 496, 595
PspN4I	GGNNCC	5 cut(s)	88, 112, 454, 593, 594
PspPI	GGNCC	4 cut(s)	41, 273, 592, 751
PspPPI	RGGWCCY	2 cut(s)	273, 592
PstI	CTGCAG	1 cut(s)	1028
PsuI	RGATCY	1 cut(s)	574
PsyI	GACNNNGTC	1 cut(s)	859
RsaI	GTAC	5 cut(s)	292, 431, 527, 601, 704
RsaNI	GTAC	5 cut(s)	291, 430, 526, 600, 703
RseI	CAYNNNNRTG	2 cut(s)	321, 375
SaqAI	TTAA	3 cut(s)	699, 915, 924
Sau3AI	GATC	4 cut(s)	574, 580, 844, 901
Sau96I	GGNCC	4 cut(s)	41, 273, 592, 751
ScrFI	CCNGG	4 cut(s)	20, 201, 498, 597
SfaNI	GCATC	3 cut(s)	447, 637, 727
SfcI	CTRYAG	1 cut(s)	1024
SinI	GGWCC	2 cut(s)	273, 592
SmiMI	CAYNNNNRTG	2 cut(s)	321, 375
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
SphI	GCATGC	1 cut(s)	185
Sse9I	AATT	6 cut(s)	186, 519, 715, 921, 933, 979
SsiI	CCGC	5 cut(s)	531, 561, 624, 693, 754
SspI	AATATT	1 cut(s)	220
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	4 cut(s)	18, 199, 496, 595
TaaI	ACNGT	2 cut(s)	374, 426
TasI	AATT	6 cut(s)	186, 519, 715, 921, 933, 979
TatI	WGTACW	3 cut(s)	290, 429, 525
TfiI	GAWTC	2 cut(s)	23, 411
Tru1I	TTAA	3 cut(s)	699, 915, 924
Tru9I	TTAA	3 cut(s)	699, 915, 924
TscAI	CASTG	3 cut(s)	379, 484, 789
TseFI	GTSAC	2 cut(s)	780, 861
Tsp45I	GTSAC	2 cut(s)	780, 861
TspDTI	ATGAA	3 cut(s)	813, 944, 995
TspGWI	ACGGA	1 cut(s)	991
TspRI	CASTG	3 cut(s)	379, 484, 789
Tth111I	GACNNNGTC	1 cut(s)	859
Vha464I	CTTAAG	1 cut(s)	698
VpaK11BI	GGWCC	2 cut(s)	273, 592
XapI	RAATTY	1 cut(s)	933
XceI	RCATGY	2 cut(s)	176, 185
XmnI	GAANNNNTTC	2 cut(s)	69, 144
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.