Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002748.1

Orthogroup ID

OG0001557

Physical Location & Seq

Genomic Coordinates Forward (+)

127375 .. 128358

Gene Structure 984 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002748.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

atggctaatcctacttaccaggaatccttgtcatttggaggcccagaccatcctcagggtcaagaagttattccatttgagagtggaaccctgaagattttgctacatggctccctagtcatatgggtcaagaaggccgaaaaccttcctgacatggagagttttcgcaagcatgtggggcatgcaattgcgaagttgcctgggacgagacgcaaaaatattatcagttctccatatgttacgatttctttatcaaatgctgtgattgggaggacctttgtgatgagtagtacagagaaccctgtgtgggagcaacattttgatgttcctgttgctcattatgcttcacgagtgaactttgttgcgaaacacagtgatgttttcggctctaagaccataggttttgttggaatctcagctcaacagttgtgctctggcatcaaagttgagggaaccttccctatccttgacactaccagtggtaaaagctgtatgcctggagctgtgttgagcttgtcaattcagtacaccgcgattgaaaaaatggcattttataatcgcggagtaggtttagatcctgatcatcaaggggtccctggtacttactttcctgttaggaaaggcggtaaagttactctttatcaagatgctcatgttcctgatggttgcctccccaacttcaagcttgacggcggtcttaagtacgagcatggaaattgttggcaagacatatttgatgcaattagtcaggcccgccgtttgatatacatagctgggtggtcactgcaccccaaagtcagattgcttcggaataataatggttcatcagatcgcacattaggtgatctgctgaagaccaagtcacaggaaggtgtgaaagttctgcttcttgtttgggacgatccaacttctattaagggaattaaaatggtaaggcccaaggtgattagacgtatacatacatgctcatattctgaactgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006629 GO:0006643 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008289 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009816 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0022626 GO:0030054 GO:0032501 GO:0032502 GO:0032991 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0071704 GO:0071944 GO:0098542 GO:1901981 GO:1902936 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

327

Amino Acids

36.09

Weight (kDa)

9.25

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11830 AT4G11830 AT4G11830 AT4G11830 AT4G11840 AT4G11840 AT4G11850
fragaria_vesca	FvH4_5g01274 FvH4_5g01290 FvH4_5g01290 FvH4_5g01290
malus_domestica	MD04G1069600.v1.1
prunus_persica	Prupe.5G088300_v2.0.a1 Prupe.5G088300_v2.0.a1
pyrus_communis	pycom04g06330
rosa_chinensis	RchiOBHm_Chr4g0413221 RchiOBHm_Chr7g0199651 RchiOBHm_Chr7g0199691 RchiOBHm_Chr7g0199711 RchiOBHm_Chr7g0199731
rosa_laevigata	RLG00000003775 RLG00000003776 RLG00000003777 RLG00000003778 RLG00000003779
rosa_multiflora	Rmu_co8400099.1_g000001 Rmu_sc0002748.1_g000025 Rmu_sc0002748.1_g000027 Rmu_sc0002748.1_g000028 Rmu_sc0009191.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256480 Rroxscaffold_3G00256490 Rroxscaffold_3G00256520
rosa_rugosa	Rorug07G0055600 Rorug07G0055800 Rorug07G0055900
rosa_samantha	Rh7AG180700 Rh7AG181000 Rh7AG181200 Rh7BG183600 Rh7BG183900 Rh7BG184100 Rh7CG190400 Rh7CG190600 Rh7CG190700 Rh7DG183600 Rh7DG183800
rosa_wichuraiana	Rw7G015870 Rw7G015880 Rw7G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	555
AccI	GTMKAC	1 cut(s)	955
AccII	CGCG	2 cut(s)	533, 561
AciI	CCGC	5 cut(s)	531, 561, 624, 693, 754
AclWI	GGATC	2 cut(s)	569, 896
AcuI	CTGAAG	2 cut(s)	113, 872
AfaI	GTAC	4 cut(s)	292, 527, 601, 704
AfiI	CCNNNNNNNGG	2 cut(s)	55, 307
AflII	CTTAAG	1 cut(s)	698
AgsI	TTSAA	2 cut(s)	539, 682
AjnI	CCWGG	4 cut(s)	18, 199, 496, 595
AluBI	AGCT	6 cut(s)	419, 489, 503, 513, 685, 773
AluI	AGCT	6 cut(s)	419, 489, 503, 513, 685, 773
Alw21I	GWGCWC	1 cut(s)	434
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	2 cut(s)	569, 896
AoxI	GGCC	4 cut(s)	40, 135, 750, 935
Asp700I	GAANNNNTTC	2 cut(s)	69, 144
AspS9I	GGNCC	5 cut(s)	41, 273, 592, 751, 936
AsuHPI	GGTGA	2 cut(s)	854, 955
AvaII	GGWCC	2 cut(s)	273, 592
AxyI	CCTNAGG	1 cut(s)	54
BauI	CACGAG	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	860
Bbv12I	GWGCWC	1 cut(s)	434
BccI	CCATC	2 cut(s)	57, 656
BceAI	ACGGC	2 cut(s)	706, 741
BciT130I	CCWGG	4 cut(s)	20, 201, 498, 597
BclI	TGATCA	1 cut(s)	580
BcoDI	GTCTC	1 cut(s)	202
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	980
BfrI	CTTAAG	1 cut(s)	698
Bme1390I	CCNGG	4 cut(s)	20, 201, 498, 597
Bme18I	GGWCC	2 cut(s)	273, 592
BmgT120I	GGNCC	5 cut(s)	41, 273, 592, 751, 936
BmiI	GGNNCC	5 cut(s)	88, 112, 454, 593, 594
BmrFI	CCNGG	4 cut(s)	20, 201, 498, 597
BmsI	GCATC	3 cut(s)	447, 637, 727
BoxI	GACNNNNGTC	1 cut(s)	693
BpiI	GAAGAC	1 cut(s)	860
BpmI	CTGGAG	1 cut(s)	519
BsaBI	GATNNNNATC	1 cut(s)	579
BsaJI	CCNNGG	3 cut(s)	200, 595, 939
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 307
Bse1I	ACTGG	1 cut(s)	477
Bse21I	CCTNAGG	1 cut(s)	54
Bse8I	GATNNNNATC	1 cut(s)	579
BseBI	CCWGG	4 cut(s)	20, 201, 498, 597
BseDI	CCNNGG	3 cut(s)	200, 595, 939
BseGI	GGATG	1 cut(s)	49
BseJI	GATNNNNATC	1 cut(s)	579
BseLI	CCNNNNNNNGG	2 cut(s)	55, 307
BseMII	CTCAG	2 cut(s)	68, 429
BseNI	ACTGG	1 cut(s)	477
BseYI	CCCAGC	1 cut(s)	773
BsgI	GTGCAG	1 cut(s)	770
Bsh1236I	CGCG	2 cut(s)	533, 561
BshFI	GGCC	4 cut(s)	42, 137, 752, 937
BsiHKAI	GWGCWC	1 cut(s)	434
BslFI	GGGAC	3 cut(s)	217, 578, 911
BslI	CCNNNNNNNGG	2 cut(s)	55, 307
BsmAI	GTCTC	1 cut(s)	202
BsmBI	CGTCTC	1 cut(s)	202
BsmFI	GGGAC	3 cut(s)	217, 578, 911
BsnI	GGCC	4 cut(s)	42, 137, 752, 937
Bsp1286I	GDGCHC	1 cut(s)	434
Bsp143I	GATC	5 cut(s)	574, 580, 829, 844, 901
BspACI	CCGC	5 cut(s)	531, 561, 624, 693, 754
BspANI	GGCC	4 cut(s)	42, 137, 752, 937
BspCNI	CTCAG	2 cut(s)	67, 428
BspFNI	CGCG	2 cut(s)	533, 561
BspLI	GGNNCC	5 cut(s)	88, 112, 454, 593, 594
BspPI	GGATC	2 cut(s)	569, 896
BspTI	CTTAAG	1 cut(s)	698
BsrI	ACTGG	1 cut(s)	477
BssECI	CCNNGG	3 cut(s)	200, 595, 939
BssMI	GATC	5 cut(s)	574, 580, 829, 844, 901
BssNAI	GTATAC	1 cut(s)	956
BssSI	CACGAG	1 cut(s)	348
BssT1I	CCWWGG	1 cut(s)	939
Bst1107I	GTATAC	1 cut(s)	956
Bst2BI	CACGAG	1 cut(s)	348
Bst2UI	CCWGG	4 cut(s)	20, 201, 498, 597
Bst4CI	ACNGT	3 cut(s)	374, 426, 981
BstAFI	CTTAAG	1 cut(s)	698
BstC8I	GCNNGC	3 cut(s)	170, 183, 754
BstDEI	CTNAG	3 cut(s)	54, 390, 415
BstF5I	GGATG	1 cut(s)	49
BstFNI	CGCG	2 cut(s)	533, 561
BstKTI	GATC	5 cut(s)	577, 583, 832, 847, 904
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	5 cut(s)	574, 580, 829, 844, 901
BstMWI	GCNNNNNNNGC	2 cut(s)	178, 341
BstNI	CCWGG	4 cut(s)	20, 201, 498, 597
BstNSI	RCATGY	3 cut(s)	176, 185, 966
BstPAI	GACNNNNGTC	1 cut(s)	693
BstSCI	CCNGG	4 cut(s)	18, 199, 496, 595
BstSFI	CTRYAG	1 cut(s)	980
BstUI	CGCG	2 cut(s)	533, 561
BstV2I	GAAGAC	1 cut(s)	860
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
BstZ17I	GTATAC	1 cut(s)	956
Bsu36I	CCTNAGG	1 cut(s)	54
BsuRI	GGCC	4 cut(s)	42, 137, 752, 937
BtsCI	GGATG	1 cut(s)	49
BtsI	GCAGTG	1 cut(s)	782
BtsIMutI	CAGTG	3 cut(s)	379, 484, 782
Cac8I	GCNNGC	3 cut(s)	170, 183, 754
Cfr13I	GGNCC	5 cut(s)	41, 273, 592, 751, 936
CseI	GACGC	1 cut(s)	219
Csp6I	GTAC	4 cut(s)	291, 526, 600, 703
CviAII	CATG	7 cut(s)	107, 154, 173, 182, 653, 710, 963
CviQI	GTAC	4 cut(s)	291, 526, 600, 703
DdeI	CTNAG	3 cut(s)	54, 390, 415
DpnI	GATC	5 cut(s)	576, 582, 831, 846, 903
DpnII	GATC	5 cut(s)	574, 580, 829, 844, 901
Eco130I	CCWWGG	1 cut(s)	939
Eco47I	GGWCC	2 cut(s)	273, 592
Eco57I	CTGAAG	2 cut(s)	113, 872
Eco81I	CCTNAGG	1 cut(s)	54
EcoO109I	RGGNCCY	2 cut(s)	273, 592
EcoRII	CCWGG	4 cut(s)	18, 199, 496, 595
EcoT14I	CCWWGG	1 cut(s)	939
ErhI	CCWWGG	1 cut(s)	939
Esp3I	CGTCTC	1 cut(s)	202
FaeI	CATG	7 cut(s)	110, 157, 176, 185, 656, 713, 966
FalI	AAGNNNNNCTT	4 cut(s)	621, 653, 870, 902
FaqI	GGGAC	3 cut(s)	217, 578, 911
FatI	CATG	7 cut(s)	106, 153, 172, 181, 652, 709, 962
FauI	CCCGC	1 cut(s)	761
FauNDI	CATATG	2 cut(s)	122, 235
FbaI	TGATCA	1 cut(s)	580
FblI	GTMKAC	1 cut(s)	955
FokI	GGATG	1 cut(s)	36
FspBI	CTAG	1 cut(s)	116
GsaI	CCCAGC	1 cut(s)	777
GsuI	CTGGAG	1 cut(s)	519
HaeIII	GGCC	4 cut(s)	42, 137, 752, 937
HgaI	GACGC	1 cut(s)	219
Hin1II	CATG	7 cut(s)	110, 157, 176, 185, 656, 713, 966
HindIII	AAGCTT	1 cut(s)	683
HinfI	GANTC	2 cut(s)	23, 411
HphI	GGTGA	2 cut(s)	854, 955
Hpy166II	GTNNAC	3 cut(s)	355, 528, 956
Hpy188I	TCNGA	4 cut(s)	800, 810, 829, 976
Hpy188III	TCNNGA	7 cut(s)	62, 130, 149, 348, 578, 644, 659
Hpy8I	GTNNAC	3 cut(s)	355, 528, 956
HpyAV	CCTTC	4 cut(s)	127, 155, 466, 863
HpyCH4III	ACNGT	3 cut(s)	374, 426, 981
HpyCH4IV	ACGT	1 cut(s)	952
HpyCH4V	TGCA	3 cut(s)	185, 740, 787
HpyF10VI	GCNNNNNNNGC	2 cut(s)	178, 341
HpyF3I	CTNAG	3 cut(s)	54, 390, 415
HpySE526I	ACGT	1 cut(s)	952
Hsp92II	CATG	7 cut(s)	110, 157, 176, 185, 656, 713, 966
KflI	GGGWCCC	1 cut(s)	592
Ksp22I	TGATCA	1 cut(s)	580
Kzo9I	GATC	5 cut(s)	574, 580, 829, 844, 901
LmnI	GCTCC	3 cut(s)	116, 310, 500
LweI	GCATC	3 cut(s)	447, 637, 727
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	1 cut(s)	952
MaeIII	GTNAC	4 cut(s)	238, 631, 780, 861
MalI	GATC	5 cut(s)	576, 582, 831, 846, 903
MboI	GATC	5 cut(s)	574, 580, 829, 844, 901
MboII	GAAGA	2 cut(s)	106, 865
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	1 cut(s)	434
MluCI	AATT	5 cut(s)	186, 519, 715, 741, 921
MmeI	TCCRAC	2 cut(s)	388, 929
MnlI	CCTC	5 cut(s)	32, 63, 264, 442, 680
MroXI	GAANNNNTTC	2 cut(s)	69, 144
MseI	TTAA	3 cut(s)	699, 915, 924
MslI	CAYNNNNRTG	2 cut(s)	321, 375
MspCI	CTTAAG	1 cut(s)	698
MspR9I	CCNGG	4 cut(s)	20, 201, 498, 597
MunI	CAATTG	1 cut(s)	186
MvaI	CCWGG	4 cut(s)	20, 201, 498, 597
MvnI	CGCG	2 cut(s)	533, 561
MwoI	GCNNNNNNNGC	2 cut(s)	178, 341
NdeI	CATATG	2 cut(s)	122, 235
NdeII	GATC	5 cut(s)	574, 580, 829, 844, 901
NlaIII	CATG	7 cut(s)	110, 157, 176, 185, 656, 713, 966
NlaIV	GGNNCC	5 cut(s)	88, 112, 454, 593, 594
NmuCI	GTSAC	2 cut(s)	780, 861
NspI	RCATGY	3 cut(s)	176, 185, 966
PaeI	GCATGC	1 cut(s)	185
PdmI	GAANNNNTTC	2 cut(s)	69, 144
PfeI	GAWTC	2 cut(s)	23, 411
PflFI	GACNNNGTC	1 cut(s)	859
PpuMI	RGGWCCY	2 cut(s)	273, 592
PshAI	GACNNNNGTC	1 cut(s)	693
PsiI	TTATAA	1 cut(s)	555
Psp5II	RGGWCCY	2 cut(s)	273, 592
Psp6I	CCWGG	4 cut(s)	18, 199, 496, 595
PspFI	CCCAGC	1 cut(s)	773
PspGI	CCWGG	4 cut(s)	18, 199, 496, 595
PspN4I	GGNNCC	5 cut(s)	88, 112, 454, 593, 594
PspPI	GGNCC	5 cut(s)	41, 273, 592, 751, 936
PspPPI	RGGWCCY	2 cut(s)	273, 592
PsuI	RGATCY	1 cut(s)	574
PsyI	GACNNNGTC	1 cut(s)	859
RsaI	GTAC	4 cut(s)	292, 527, 601, 704
RsaNI	GTAC	4 cut(s)	291, 526, 600, 703
RseI	CAYNNNNRTG	2 cut(s)	321, 375
SaqAI	TTAA	3 cut(s)	699, 915, 924
Sau3AI	GATC	5 cut(s)	574, 580, 829, 844, 901
Sau96I	GGNCC	5 cut(s)	41, 273, 592, 751, 936
ScrFI	CCNGG	4 cut(s)	20, 201, 498, 597
SduI	GDGCHC	1 cut(s)	434
SfaNI	GCATC	3 cut(s)	447, 637, 727
SfcI	CTRYAG	1 cut(s)	980
SinI	GGWCC	2 cut(s)	273, 592
SmiMI	CAYNNNNRTG	2 cut(s)	321, 375
SmlI	CTYRAG	1 cut(s)	698
SmoI	CTYRAG	1 cut(s)	698
SphI	GCATGC	1 cut(s)	185
Sse9I	AATT	5 cut(s)	186, 519, 715, 741, 921
SsiI	CCGC	5 cut(s)	531, 561, 624, 693, 754
SspI	AATATT	1 cut(s)	220
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	4 cut(s)	18, 199, 496, 595
StyI	CCWWGG	1 cut(s)	939
TaaI	ACNGT	3 cut(s)	374, 426, 981
TaiI	ACGT	1 cut(s)	955
TasI	AATT	5 cut(s)	186, 519, 715, 741, 921
TatI	WGTACW	2 cut(s)	290, 525
TfiI	GAWTC	2 cut(s)	23, 411
Tru1I	TTAA	3 cut(s)	699, 915, 924
Tru9I	TTAA	3 cut(s)	699, 915, 924
TscAI	CASTG	3 cut(s)	379, 484, 789
TseFI	GTSAC	2 cut(s)	780, 861
Tsp45I	GTSAC	2 cut(s)	780, 861
TspDTI	ATGAA	1 cut(s)	813
TspRI	CASTG	3 cut(s)	379, 484, 789
Tth111I	GACNNNGTC	1 cut(s)	859
Vha464I	CTTAAG	1 cut(s)	698
VpaK11BI	GGWCC	2 cut(s)	273, 592
XceI	RCATGY	3 cut(s)	176, 185, 966
XmiI	GTMKAC	1 cut(s)	955
XmnI	GAANNNNTTC	2 cut(s)	69, 144
XspI	CTAG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.