Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001557

Physical Location & Seq

Genomic Coordinates Forward (+)

3938277 .. 3941385

Gene Structure 3109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0055600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCAACGGTTCCTTCAGTAACCCTAAGCTCCTCCAGTGATGAGATCCTAACCATGCCTATCATCGGCATGGGAACTTCATCGTACCCTCGGGCCGACCCAGAAACCGCCAAGGCTGCCATTCTCAAAGCGATCAGAGCTGGTTACAGTGGCGGACGCAGGAATATATATCACTGGGGGCAGTTGCCAAATGTCAAAAGCTCAGTGGGGGCAGCTGCCCCCACTCGTCCCACTGTGCGTCCGCCACTAGCTGGTTACCGACATTTTGACACCGCCTTTGCTTACGGGTCGGAGCAAGATCTCGGTGCAGCCATAGACGAGGCTCTCCATCTCGGACTCATCAACTCTAGGGATGACCTCTTCATCACAACCAAGCTTTGGGCTAGTTTCGCCGACAAAGACCTTGTGCTGTCGTCCATCAAAACCAGTTTAAGGAATCTACTCAACATTGACATGTACATCATACATTGGCCTTTCAAATTGGGAAAAGAGGTGAAAAGCATGCCTGTTGAGAGAGATCTGGTGCAGCCCCTTGATCTCAAATCTGTTTGGGAAGCCATGGAAGAGTGCAAGAAACTTGGCCTTGCTAGAGGTATTGGCGTCAGTAACTTCACATGCAGTATGCTCGAGGAGCTTCTTTCCTTCGCCGAAATCCCTCCGGCCGTCAACCAATTGGAGATGAACCCAGCTTGGCAGCTGAAGAAATTGAGGGACTTCTGCAAGGCAAAGGGTGTTCATGTCACGGCTTACTCTCCGCTCGGAGCAGCTAGGACTAAATGGGGTGACAATAGGATTTTGGGGTCAGATGTGATCGAAGAGATTGCCCTAGCCAGAGGAAAAACAACTGCTCAGATATCATTGAGATGGGTCATGGGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006629 GO:0006643 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008289 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009816 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0022626 GO:0030054 GO:0032501 GO:0032502 GO:0032991 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0071704 GO:0071944 GO:0098542 GO:1901981 GO:1902936 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

293

Amino Acids

32.13

Weight (kDa)

8.87

Isoelectric Point (pI)

41.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	84 - 291	4.5e-35	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11830 AT4G11830 AT4G11830 AT4G11830 AT4G11840 AT4G11840 AT4G11850
fragaria_vesca	FvH4_5g01274 FvH4_5g01290 FvH4_5g01290 FvH4_5g01290
malus_domestica	MD04G1069600.v1.1
prunus_persica	Prupe.5G088300_v2.0.a1 Prupe.5G088300_v2.0.a1
pyrus_communis	pycom04g06330
rosa_chinensis	RchiOBHm_Chr4g0413221 RchiOBHm_Chr7g0199651 RchiOBHm_Chr7g0199691 RchiOBHm_Chr7g0199711 RchiOBHm_Chr7g0199731
rosa_laevigata	RLG00000003775 RLG00000003776 RLG00000003777 RLG00000003778 RLG00000003779
rosa_multiflora	Rmu_co8400099.1_g000001 Rmu_sc0002748.1_g000025 Rmu_sc0002748.1_g000027 Rmu_sc0002748.1_g000028 Rmu_sc0009191.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256480 Rroxscaffold_3G00256490 Rroxscaffold_3G00256520
rosa_rugosa	Rorug07G0055600 Rorug07G0055800 Rorug07G0055900
rosa_samantha	Rh7AG180700 Rh7AG181000 Rh7AG181200 Rh7BG183600 Rh7BG183900 Rh7BG184100 Rh7CG190400 Rh7CG190600 Rh7CG190700 Rh7DG183600 Rh7DG183800
rosa_wichuraiana	Rw7G015870 Rw7G015880 Rw7G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	251, 378
AccBSI	CCGCTC	1 cut(s)	757
AciI	CCGC	5 cut(s)	108, 153, 242, 273, 755
AclWI	GGATC	1 cut(s)	40
AcoI	YGGCCR	1 cut(s)	660
AcuI	CTGAAG	1 cut(s)	719
AcyI	GRCGYC	1 cut(s)	600
AfaI	GTAC	2 cut(s)	86, 458
AfiI	CCNNNNNNNGG	4 cut(s)	65, 251, 378, 432
AflIII	ACRYGT	1 cut(s)	453
AgsI	TTSAA	1 cut(s)	478
AlwI	GGATC	1 cut(s)	40
Ama87I	CYCGRG	2 cut(s)	90, 626
AoxI	GGCC	4 cut(s)	93, 470, 580, 660
ApeKI	GCWGC	7 cut(s)	116, 212, 215, 308, 526, 694, 764
ArsI	GACNNNNNNTTYG	2 cut(s)	260, 292
AspS9I	GGNCC	1 cut(s)	93
AsuHPI	GGTGA	2 cut(s)	505, 794
AvaI	CYCGRG	2 cut(s)	90, 626
BbvI	GCAGC	7 cut(s)	103, 202, 224, 320, 538, 706, 776
BccI	CCATC	3 cut(s)	336, 425, 858
BceAI	ACGGC	2 cut(s)	647, 759
BcgI	CGANNNNNNTGC	4 cut(s)	607, 641, 803, 837
BfaI	CTAG	6 cut(s)	248, 348, 384, 588, 768, 827
BglII	AGATCT	2 cut(s)	298, 517
BisI	GCNGC	7 cut(s)	117, 213, 216, 309, 527, 695, 765
BlsI	GCNGC	7 cut(s)	118, 214, 217, 310, 528, 696, 766
BmeT110I	CYCGRG	2 cut(s)	90, 626
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	1 cut(s)	12
BmrI	ACTGGG	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	184
BpmI	CTGGAG	1 cut(s)	19
Bpu10I	CCTNAGC	1 cut(s)	26
BsaHI	GRCGYC	1 cut(s)	600
BsaJI	CCNNGG	3 cut(s)	89, 111, 558
Bsc4I	CCNNNNNNNGG	4 cut(s)	65, 251, 378, 432
Bse1I	ACTGG	3 cut(s)	36, 179, 426
BseDI	CCNNGG	3 cut(s)	89, 111, 558
BseGI	GGATG	1 cut(s)	358
BseLI	CCNNNNNNNGG	4 cut(s)	65, 251, 378, 432
BseMII	CTCAG	2 cut(s)	216, 863
BseNI	ACTGG	3 cut(s)	36, 179, 426
BseRI	GAGGAG	2 cut(s)	22, 644
BseX3I	CGGCCG	1 cut(s)	660
BseXI	GCAGC	7 cut(s)	103, 202, 224, 320, 538, 706, 776
BseYI	CCCAGC	1 cut(s)	685
BsgI	GTGCAG	2 cut(s)	327, 545
Bsh1285I	CGRYCG	1 cut(s)	663
BshFI	GGCC	4 cut(s)	95, 472, 582, 662
BsiEI	CGRYCG	1 cut(s)	663
BsiHKCI	CYCGRG	2 cut(s)	90, 626
BsiSI	CCGG	1 cut(s)	659
BslFI	GGGAC	2 cut(s)	213, 725
BslI	CCNNNNNNNGG	4 cut(s)	65, 251, 378, 432
BsmFI	GGGAC	2 cut(s)	213, 725
BsnI	GGCC	4 cut(s)	95, 472, 582, 662
BsoBI	CYCGRG	2 cut(s)	90, 626
Bsp1407I	TGTACA	1 cut(s)	456
Bsp143I	GATC	6 cut(s)	45, 132, 298, 517, 535, 810
Bsp19I	CCATGG	1 cut(s)	558
BspACI	CCGC	5 cut(s)	108, 153, 242, 273, 755
BspANI	GGCC	4 cut(s)	95, 472, 582, 662
BspCNI	CTCAG	2 cut(s)	215, 862
BspLI	GGNNCC	1 cut(s)	12
BspPI	GGATC	1 cut(s)	40
BsrBI	CCGCTC	1 cut(s)	757
BsrGI	TGTACA	1 cut(s)	456
BsrI	ACTGG	3 cut(s)	36, 179, 426
BssECI	CCNNGG	3 cut(s)	89, 111, 558
BssMI	GATC	6 cut(s)	45, 132, 298, 517, 535, 810
BssNI	GRCGYC	1 cut(s)	600
BssT1I	CCWWGG	2 cut(s)	111, 558
Bst4CI	ACNGT	3 cut(s)	10, 149, 235
Bst6I	CTCTTC	3 cut(s)	365, 558, 810
BstACI	GRCGYC	1 cut(s)	600
BstAUI	TGTACA	1 cut(s)	456
BstC8I	GCNNGC	1 cut(s)	503
BstDEI	CTNAG	3 cut(s)	26, 202, 849
BstDSI	CCRYGG	1 cut(s)	558
BstEII	GGTNACC	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	358
BstKTI	GATC	6 cut(s)	48, 135, 301, 520, 538, 813
BstMBI	GATC	6 cut(s)	45, 132, 298, 517, 535, 810
BstMCI	CGRYCG	1 cut(s)	663
BstMWI	GCNNNNNNNGC	4 cut(s)	116, 137, 389, 631
BstNSI	RCATGY	3 cut(s)	457, 505, 618
BstPI	GGTNACC	1 cut(s)	254
BstV1I	GCAGC	7 cut(s)	103, 202, 224, 320, 538, 706, 776
BstX2I	RGATCY	3 cut(s)	45, 298, 517
BstYI	RGATCY	3 cut(s)	45, 298, 517
BstZI	CGGCCG	1 cut(s)	660
BsuRI	GGCC	4 cut(s)	95, 472, 582, 662
BtgI	CCRYGG	1 cut(s)	558
BtsCI	GGATG	1 cut(s)	358
BtsIMutI	CAGTG	5 cut(s)	43, 154, 172, 210, 231
Cac8I	GCNNGC	1 cut(s)	503
Cfr13I	GGNCC	1 cut(s)	93
CseI	GACGC	3 cut(s)	165, 227, 589
Csp6I	GTAC	2 cut(s)	85, 457
CviAII	CATG	8 cut(s)	55, 70, 454, 502, 559, 615, 737, 871
CviQI	GTAC	2 cut(s)	85, 457
DdeI	CTNAG	3 cut(s)	26, 202, 849
DpnI	GATC	6 cut(s)	47, 134, 300, 519, 537, 812
DpnII	GATC	6 cut(s)	45, 132, 298, 517, 535, 810
EaeI	YGGCCR	1 cut(s)	660
EagI	CGGCCG	1 cut(s)	660
Eam1104I	CTCTTC	3 cut(s)	365, 558, 810
EarI	CTCTTC	3 cut(s)	365, 558, 810
EciI	GGCGGA	2 cut(s)	168, 231
EclXI	CGGCCG	1 cut(s)	660
Eco130I	CCWWGG	2 cut(s)	111, 558
Eco32I	GATATC	1 cut(s)	855
Eco52I	CGGCCG	1 cut(s)	660
Eco57I	CTGAAG	1 cut(s)	719
Eco88I	CYCGRG	2 cut(s)	90, 626
Eco91I	GGTNACC	1 cut(s)	254
EcoO65I	GGTNACC	1 cut(s)	254
EcoRV	GATATC	1 cut(s)	855
EcoT14I	CCWWGG	2 cut(s)	111, 558
ErhI	CCWWGG	2 cut(s)	111, 558
FaeI	CATG	8 cut(s)	58, 73, 457, 505, 562, 618, 740, 874
FaqI	GGGAC	2 cut(s)	213, 725
FatI	CATG	8 cut(s)	54, 69, 453, 501, 558, 614, 736, 870
Fnu4HI	GCNGC	7 cut(s)	117, 213, 216, 309, 527, 695, 765
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	7 cut(s)	117, 213, 216, 309, 527, 695, 765
FspBI	CTAG	6 cut(s)	248, 348, 384, 588, 768, 827
GluI	GCNGC	7 cut(s)	117, 213, 216, 309, 527, 695, 765
GsaI	CCCAGC	1 cut(s)	689
GsuI	CTGGAG	1 cut(s)	19
HaeIII	GGCC	4 cut(s)	95, 472, 582, 662
HapII	CCGG	1 cut(s)	659
HgaI	GACGC	3 cut(s)	165, 227, 589
Hin1I	GRCGYC	1 cut(s)	600
Hin1II	CATG	8 cut(s)	58, 73, 457, 505, 562, 618, 740, 874
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	2 cut(s)	336, 436
HpaII	CCGG	1 cut(s)	659
HphI	GGTGA	2 cut(s)	505, 794
Hpy166II	GTNNAC	1 cut(s)	667
Hpy188I	TCNGA	6 cut(s)	137, 292, 335, 761, 805, 852
Hpy8I	GTNNAC	1 cut(s)	667
HpyAV	CCTTC	2 cut(s)	24, 652
HpyCH4III	ACNGT	3 cut(s)	10, 149, 235
HpyCH4V	TGCA	5 cut(s)	308, 526, 570, 618, 720
HpyF10VI	GCNNNNNNNGC	4 cut(s)	116, 137, 389, 631
HpyF3I	CTNAG	3 cut(s)	26, 202, 849
Hsp92I	GRCGYC	1 cut(s)	600
Hsp92II	CATG	8 cut(s)	58, 73, 457, 505, 562, 618, 740, 874
Kzo9I	GATC	6 cut(s)	45, 132, 298, 517, 535, 810
LmnI	GCTCC	4 cut(s)	35, 292, 631, 761
Lsp1109I	GCAGC	7 cut(s)	103, 202, 224, 320, 538, 706, 776
MaeI	CTAG	6 cut(s)	248, 348, 384, 588, 768, 827
MaeIII	GTNAC	6 cut(s)	19, 143, 254, 605, 739, 782
MalI	GATC	6 cut(s)	47, 134, 300, 519, 537, 812
MbiI	CCGCTC	1 cut(s)	757
MboI	GATC	6 cut(s)	45, 132, 298, 517, 535, 810
MboII	GAAGA	4 cut(s)	352, 575, 712, 827
MfeI	CAATTG	1 cut(s)	671
MflI	RGATCY	3 cut(s)	45, 298, 517
MluCI	AATT	3 cut(s)	479, 671, 704
MlyI	GAGTC	1 cut(s)	330
MmeI	TCCRAC	1 cut(s)	270
MseI	TTAA	1 cut(s)	431
MslI	CAYNNNNRTG	3 cut(s)	68, 452, 862
MspA1I	CMGCKG	2 cut(s)	215, 697
MspI	CCGG	1 cut(s)	659
MunI	CAATTG	1 cut(s)	671
MwoI	GCNNNNNNNGC	4 cut(s)	116, 137, 389, 631
NcoI	CCATGG	1 cut(s)	558
NdeII	GATC	6 cut(s)	45, 132, 298, 517, 535, 810
NlaIII	CATG	8 cut(s)	58, 73, 457, 505, 562, 618, 740, 874
NlaIV	GGNNCC	1 cut(s)	12
NmuCI	GTSAC	2 cut(s)	739, 782
NspI	RCATGY	3 cut(s)	457, 505, 618
PaeI	GCATGC	1 cut(s)	505
PaeR7I	CTCGAG	1 cut(s)	626
PciI	ACATGT	1 cut(s)	453
PfeI	GAWTC	1 cut(s)	436
PflMI	CCANNNNNTGG	2 cut(s)	251, 378
PkrI	GCNGC	7 cut(s)	118, 214, 217, 310, 528, 696, 766
PleI	GAGTC	1 cut(s)	330
PpsI	GAGTC	1 cut(s)	330
PscI	ACATGT	1 cut(s)	453
PspEI	GGTNACC	1 cut(s)	254
PspFI	CCCAGC	1 cut(s)	685
PspN4I	GGNNCC	1 cut(s)	12
PspPI	GGNCC	1 cut(s)	93
PspXI	VCTCGAGB	1 cut(s)	626
PsuI	RGATCY	3 cut(s)	45, 298, 517
PvuII	CAGCTG	2 cut(s)	215, 697
RsaI	GTAC	2 cut(s)	86, 458
RsaNI	GTAC	2 cut(s)	85, 457
RseI	CAYNNNNRTG	3 cut(s)	68, 452, 862
SaqAI	TTAA	1 cut(s)	431
SatI	GCNGC	7 cut(s)	117, 213, 216, 309, 527, 695, 765
Sau3AI	GATC	6 cut(s)	45, 132, 298, 517, 535, 810
Sau96I	GGNCC	1 cut(s)	93
SchI	GAGTC	1 cut(s)	330
Sfr274I	CTCGAG	1 cut(s)	626
SlaI	CTCGAG	1 cut(s)	626
SmiMI	CAYNNNNRTG	3 cut(s)	68, 452, 862
SmlI	CTYRAG	1 cut(s)	626
SmoI	CTYRAG	1 cut(s)	626
SphI	GCATGC	1 cut(s)	505
Sse9I	AATT	3 cut(s)	479, 671, 704
SsiI	CCGC	5 cut(s)	108, 153, 242, 273, 755
SspMI	CTAG	6 cut(s)	248, 348, 384, 588, 768, 827
StyI	CCWWGG	2 cut(s)	111, 558
TaaI	ACNGT	3 cut(s)	10, 149, 235
TaqI	TCGA	2 cut(s)	627, 813
TasI	AATT	3 cut(s)	479, 671, 704
TatI	WGTACW	1 cut(s)	456
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	1 cut(s)	431
Tru9I	TTAA	1 cut(s)	431
TscAI	CASTG	5 cut(s)	43, 154, 179, 210, 238
TseFI	GTSAC	2 cut(s)	739, 782
TseI	GCWGC	7 cut(s)	116, 212, 215, 308, 526, 694, 764
Tsp45I	GTSAC	2 cut(s)	739, 782
TspDTI	ATGAA	4 cut(s)	69, 352, 695, 725
TspRI	CASTG	5 cut(s)	43, 154, 179, 210, 238
Van91I	CCANNNNNTGG	2 cut(s)	251, 378
XceI	RCATGY	3 cut(s)	457, 505, 618
XhoI	CTCGAG	1 cut(s)	626
XspI	CTAG	6 cut(s)	248, 348, 384, 588, 768, 827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.