Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001557

Physical Location & Seq

Genomic Coordinates Reverse (-)

17733143 .. 17740113

Gene Structure 6971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17871

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2589 bp

ATGGCTAATCTTGGATATAAGGAATCGTTGTCATTTGGAGGCTCTGGCCATGCGCAGGGTCAACAAGTTGTGCCATTTGAGAGTGGAGCCCTGAGGCTTTTGCTACACGGGTCCCTAGTTATATGTGTCAAGGAGGCCAAGAATCTTCCTGATATGGATGGTTTGCATAAGCATATGGGGCGTGTGATTTCCAAGTTGCCTGGAAGAAGTAGCAAAAAGACAACCAGTGCTCCATATGTTACAATTGCACTATCAGGTGCTGTAGTTGGGAGGACCTTTGTGATTAGTAATAGTCAGAACCCTGTCTGGAATCAACATTTTGATGTTCCGGTTGCGCACTATGCTTCTGAAGTGCATTTTGTTGTGAAGCATACTGATGTGGTGGGATCCCAGACTATAGGTTCTGTGGGAATCCCAGTTGAAGAATTATACTCTGGCGTAAAAATTGAGGGAACCTTCCCTATCCTTAACTCTACTGGTCATATCTGTATGCCTGGAGTTGTTTTGAGCTTATCAATTCAGTATACCTCAATTCAAAAGATGACCTTTTGCAATTGTGGAGTAGGTTCAGATCCTGATCATCAAGGGGTCCCTGGTACTTACTTTCCTCTTAGGAAAGGCGGTAAAGTAACTCTCTATCAAGATGCCCATGTTCCTGATGGTTGCCTTCCCAATTTTGAGCTTGATGGCGGTCTTGAGTATGAGCATGGAAATTGTTGGCAAGACATATTTGATGCAATAAGTAAGGCCCGTCACTTGATATACATTACCGGGTGGTCATTGTGCCACAAAGTTACATTGGTTCGGGATAATCATGGTGCATCAGATTGCACATTAGGGGATCTTCTTAAGACCAAGTCACAGGAAGGTGTGAGAGTGCTGCTTCTTGTTTGGGATGATCCAACTTCAAGGAATATCATGGGATCTATAAAGGGAGGACTCATGCATACCAATGATGAGGAACTTCGGCGTTTCTTCAAAAACTCTTCAGTCCAAGTGCTTCTTTGCCCTCGATCTGCTGGAGAGGGTACCTGGGCCAAAAAGCAGGAAGCAGGAATAATCTATACCCATCATCAGAAAACTGTGCTTGTGGATGCTGATGCTGGCCAATATAAAAGAAAGATCATTGCTTTTATTGGAGGCCTTGATTTATGTCTGGGACGTTATGATACTCCAGAGCATCCTATCTTTAGGACTTTACAAACAGTGCACAAGGATGACAATCATAACCCCACTTTCTCGAAACCCGTTATTGGGTGTCCAAGGGAGCCATGGCATGATTTGCACAGTAAAATTGATGGTCCAGCTGCTTATGACATCCTCACCAATTTTGAGCAGCGTTGGGGGATGGCTTCAAAACCACATGGTCTTCACAAACTAAAAGAACGAGGTCTTCAAAAACTGAAAGTACGAGGGCTTCATAAACTAGAAACACAAGATGATGGTGATGATGATGCATTGCTTAAGACAGAGAAAATTCCAGACCTTATTGGGATGACAGAAGTTTCTTGCTTGAGTGAGGATGATAAAGAAGCTTGGGATGTTCAGGTATTCCGTTCAATTGATTCAAATTCAGCAAAAGGATTCCCTGAAGACCCCAAAGATGCAACTAGAGTGAACCTGGTTTCAATACGTGCAGCTCAACATTTTATTTACATAGAGAACCAGTACTTTCTTGGATCATCATATAATTGGAACTTATACAATGATTTAGGTGCAAACAATCTGATACCAATGGAAATTGCTCTGAAAATTGTAAATAAAATCAAAGCAAATGAGAGGTTTTCTGTGTATATTATTATCCCCATGTGGCCAGAAGGTGATCCGACAAGTGTTCCTCTACAACGAATTCTCCTTTGGCAGCATAAAACAATGCAAATGATGTATGAAATGATTTACAAGGCTCTAAAGGAGGTTGGACTTGAAAACACGTACTGTCCACAAGACTATTTGAATTTCTTTTGCCTTGGGAATCGTGAGACACTAAGTGGAGAAGACAATTCTGCTCCAAATAATTTAAGTGAAGCAAACACTCCTCAAGCACTCACCCTGAAGAATCGGCGGTTTATGATTTATGTTCATTCTAAAGGAATGATAGTGGACGATGAATATGTTATACTAGGATCTGCAAATATCAATCAGCGATCCATGGAAGGTCCCCGAGATACTGAAATAGCAATGGGGGCTTATCAGCCTCATCATACTTGGACAAGAAAACTCTCTAGTCCACATGGAAAGGTATATGGATATAGAATGTCACTGTGGGCAGAGCATATAGGACTTGTCGAAGAATGTTTCAAGCAGCCAGAGAGTCTTGAATGTGTCCGAAGGGTAAGGTCTTTGAGTGAGCAGAACTGGAGTCAATACGTAGCCAATGAAGTCACAGAAATGAAGGGTCACCTCCTCAAGTATCCGGTTAAAGTTGGTCCAACTGGCGAGGTGGAGCCTCTTCCAAGCTGTGCAGCATTTCCAGATGTCGGTGGCTACATACTGGGGAGTCTCGGCGACATAGGGAAGAGTCTAGGGATCGGTAGTATTAATGGGAGGGGAATATCATTCAGGGCCATGCAAGAAAATCTCACCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006629 GO:0006643 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008289 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009816 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0022626 GO:0030054 GO:0032501 GO:0032502 GO:0032991 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0071704 GO:0071944 GO:0098542 GO:1901981 GO:1902936 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

862

Amino Acids

96.02

Weight (kDa)

6.51

Isoelectric Point (pI)

37.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	37 - 154	5.4e-16	C2 domain
PLDc_2	PF13091	673 - 722	7.4e-06	PLD-like domain
PLDc	PF00614	691 - 716	8.3e-08	Phospholipase D Active site motif
PLD_C	PF12357	763 - 833	3.8e-29	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11830 AT4G11830 AT4G11830 AT4G11830 AT4G11840 AT4G11840 AT4G11850
fragaria_vesca	FvH4_5g01274 FvH4_5g01290 FvH4_5g01290 FvH4_5g01290
malus_domestica	MD04G1069600.v1.1
prunus_persica	Prupe.5G088300_v2.0.a1 Prupe.5G088300_v2.0.a1
pyrus_communis	pycom04g06330
rosa_chinensis	RchiOBHm_Chr4g0413221 RchiOBHm_Chr7g0199651 RchiOBHm_Chr7g0199691 RchiOBHm_Chr7g0199711 RchiOBHm_Chr7g0199731
rosa_laevigata	RLG00000003775 RLG00000003776 RLG00000003777 RLG00000003778 RLG00000003779
rosa_multiflora	Rmu_co8400099.1_g000001 Rmu_sc0002748.1_g000025 Rmu_sc0002748.1_g000027 Rmu_sc0002748.1_g000028 Rmu_sc0009191.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256480 Rroxscaffold_3G00256490 Rroxscaffold_3G00256520
rosa_rugosa	Rorug07G0055600 Rorug07G0055800 Rorug07G0055900
rosa_samantha	Rh7AG180700 Rh7AG181000 Rh7AG181200 Rh7BG183600 Rh7BG183900 Rh7BG184100 Rh7CG190400 Rh7CG190600 Rh7CG190700 Rh7DG183600 Rh7DG183800
rosa_wichuraiana	Rw7G015870 Rw7G015880 Rw7G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	54, 336
Acc65I	GGTACC	1 cut(s)	1028
AccB1I	GGYRCC	1 cut(s)	1028
AccI	GTMKAC	1 cut(s)	524
AciI	CCGC	3 cut(s)	621, 690, 2062
AcoI	YGGCCR	3 cut(s)	46, 1105, 1811
AcsI	RAATTY	4 cut(s)	1476, 1570, 1848, 1954
AcuI	CTGAAG	4 cut(s)	369, 972, 1611, 2072
AdeI	CACNNNGTG	1 cut(s)	1988
AfaI	GTAC	5 cut(s)	598, 1030, 1410, 1670, 1934
AfiI	CCNNNNNNNGG	4 cut(s)	55, 1253, 1254, 2477
AflII	CTTAAG	2 cut(s)	848, 1463
AflIII	ACRYGT	1 cut(s)	1929
AjnI	CCWGG	5 cut(s)	199, 493, 592, 1031, 1620
AjuI	GAANNNNNNNTTGG	2 cut(s)	1840, 1872
AluBI	AGCT	6 cut(s)	510, 682, 1307, 1535, 1640, 2457
AluI	AGCT	6 cut(s)	510, 682, 1307, 1535, 1640, 2457
Alw21I	GWGCWC	2 cut(s)	232, 1212
Alw26I	GTCTC	2 cut(s)	1973, 2504
Alw44I	GTGCAC	1 cut(s)	1208
AlwNI	CAGNNNCTG	2 cut(s)	260, 575
Ama87I	CYCGRG	1 cut(s)	2160
AoxI	GGCC	8 cut(s)	46, 135, 747, 1035, 1105, 1141, 1811, 2562
ApaLI	GTGCAC	1 cut(s)	1208
ApeKI	GCWGC	7 cut(s)	880, 1307, 1336, 1637, 1861, 2302, 2462
ApoI	RAATTY	4 cut(s)	1476, 1570, 1848, 1954
AseI	ATTAAT	1 cut(s)	2538
Asp718I	GGTACC	1 cut(s)	1028
AspLEI	GCGC	2 cut(s)	55, 337
AspS9I	GGNCC	9 cut(s)	111, 273, 589, 748, 1035, 1301, 2156, 2426, 2562
AsuC2I	CCSGG	1 cut(s)	772
AsuHPI	GGTGA	6 cut(s)	1315, 1457, 1832, 2038, 2390, 2572
AvaI	CYCGRG	1 cut(s)	2160
AvaII	GGWCC	6 cut(s)	111, 273, 589, 1301, 2156, 2426
AxyI	CCTNAGG	1 cut(s)	92
BaeGI	GKGCMC	1 cut(s)	1212
BalI	TGGCCA	3 cut(s)	48, 1107, 1813
BamHI	GGATCC	1 cut(s)	386
BanI	GGYRCC	1 cut(s)	1028
BanII	GRGCYC	1 cut(s)	91
BarI	GAAGNNNNNNTAC	2 cut(s)	1401, 1433
BbsI	GAAGAC	4 cut(s)	1361, 1385, 1599, 2001
Bbv12I	GWGCWC	2 cut(s)	232, 1212
BbvI	GCAGC	7 cut(s)	867, 1294, 1348, 1649, 1873, 2314, 2474
BccI	CCATC	7 cut(s)	152, 653, 680, 1077, 1292, 1342, 1436
BciT130I	CCWGG	5 cut(s)	201, 495, 594, 1033, 1622
BciVI	GTATCC	1 cut(s)	2421
BclI	TGATCA	1 cut(s)	577
BcnI	CCSGG	1 cut(s)	772
BcoDI	GTCTC	2 cut(s)	1973, 2504
BfaI	CTAG	6 cut(s)	116, 1427, 1611, 2120, 2223, 2522
BfmI	CTRYAG	2 cut(s)	261, 396
BfrI	CTTAAG	2 cut(s)	848, 1463
BfuI	GTATCC	1 cut(s)	2421
BisI	GCNGC	7 cut(s)	881, 1308, 1337, 1638, 1862, 2303, 2463
BlsI	GCNGC	7 cut(s)	882, 1309, 1338, 1639, 1863, 2304, 2464
BmcAI	AGTACT	1 cut(s)	1670
Bme1390I	CCNGG	6 cut(s)	201, 495, 594, 772, 1033, 1622
Bme18I	GGWCC	6 cut(s)	111, 273, 589, 1301, 2156, 2426
BmeT110I	CYCGRG	1 cut(s)	2160
BmgT120I	GGNCC	9 cut(s)	111, 273, 589, 748, 1035, 1301, 2156, 2426, 2562
BmrFI	CCNGG	6 cut(s)	201, 495, 594, 772, 1033, 1622
BmrI	ACTGGG	2 cut(s)	410, 2501
BmsI	GCATC	8 cut(s)	634, 724, 830, 1084, 1090, 1189, 1444, 1594
BmuI	ACTGGG	2 cut(s)	410, 2501
BpiI	GAAGAC	4 cut(s)	1361, 1385, 1599, 2001
BpmI	CTGGAG	4 cut(s)	516, 1041, 1158, 2377
BpuEI	CTTGAG	4 cut(s)	716, 1534, 2022, 2390
BpuMI	CCSGG	1 cut(s)	772
BsaAI	YACGTR	3 cut(s)	1634, 1932, 2368
BsaBI	GATNNNNATC	2 cut(s)	576, 1221
BsaJI	CCNNGG	6 cut(s)	592, 1032, 1262, 1271, 1966, 2148
BsaWI	WCCGGW	2 cut(s)	328, 2413
BsaXI	ACNNNNNCTCC	4 cut(s)	214, 244, 1836, 1866
Bsc4I	CCNNNNNNNGG	4 cut(s)	55, 1253, 1254, 2477
Bse1I	ACTGG	7 cut(s)	225, 416, 481, 1666, 2360, 2437, 2496
Bse21I	CCTNAGG	1 cut(s)	92
Bse3DI	GCAATG	3 cut(s)	1125, 1457, 2184
Bse8I	GATNNNNATC	2 cut(s)	576, 1221
BseBI	CCWGG	5 cut(s)	201, 495, 594, 1033, 1622
BseDI	CCNNGG	6 cut(s)	592, 1032, 1262, 1271, 1966, 2148
BseJI	GATNNNNATC	2 cut(s)	576, 1221
BseLI	CCNNNNNNNGG	4 cut(s)	55, 1253, 1254, 2477
BseMI	GCAATG	3 cut(s)	1125, 1457, 2184
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	7 cut(s)	225, 416, 481, 1666, 2360, 2437, 2496
BseRI	GAGGAG	2 cut(s)	2025, 2393
BseSI	GKGCMC	1 cut(s)	1212
BseXI	GCAGC	7 cut(s)	867, 1294, 1348, 1649, 1873, 2314, 2474
BsgI	GTGCAG	2 cut(s)	1656, 2481
BshFI	GGCC	8 cut(s)	48, 137, 749, 1037, 1107, 1143, 1813, 2564
BshNI	GGYRCC	1 cut(s)	1028
BsiHKAI	GWGCWC	2 cut(s)	232, 1212
BsiHKCI	CYCGRG	1 cut(s)	2160
BsiSI	CCGG	3 cut(s)	329, 771, 2414
BslFI	GGGAC	4 cut(s)	97, 575, 1173, 2142
BslI	CCNNNNNNNGG	4 cut(s)	55, 1253, 1254, 2477
BsmAI	GTCTC	2 cut(s)	1973, 2504
BsmFI	GGGAC	4 cut(s)	97, 575, 1173, 2142
BsnI	GGCC	8 cut(s)	48, 137, 749, 1037, 1107, 1143, 1813, 2564
BsoBI	CYCGRG	1 cut(s)	2160
Bsp1286I	GDGCHC	3 cut(s)	91, 232, 1212
Bsp19I	CCATGG	2 cut(s)	1271, 2148
BspACI	CCGC	3 cut(s)	621, 690, 2062
BspANI	GGCC	8 cut(s)	48, 137, 749, 1037, 1107, 1143, 1813, 2564
BspCNI	CTCAG	1 cut(s)	84
BspT107I	GGYRCC	1 cut(s)	1028
BspTI	CTTAAG	2 cut(s)	848, 1463
BsrDI	GCAATG	3 cut(s)	1125, 1457, 2184
BsrI	ACTGG	7 cut(s)	225, 416, 481, 1666, 2360, 2437, 2496
BssECI	CCNNGG	6 cut(s)	592, 1032, 1262, 1271, 1966, 2148
BssNAI	GTATAC	1 cut(s)	525
BssT1I	CCWWGG	4 cut(s)	1262, 1271, 1966, 2148
Bst1107I	GTATAC	1 cut(s)	525
Bst2UI	CCWGG	5 cut(s)	201, 495, 594, 1033, 1622
Bst4CI	ACNGT	5 cut(s)	1084, 1207, 1289, 1937, 2262
Bst6I	CTCTTC	3 cut(s)	991, 2454, 2510
BstAFI	CTTAAG	2 cut(s)	848, 1463
BstAPI	GCANNNNNTGC	1 cut(s)	1282
BstBAI	YACGTR	3 cut(s)	1634, 1932, 2368
BstC8I	GCNNGC	1 cut(s)	1105
BstDEI	CTNAG	3 cut(s)	92, 611, 1985
BstDSI	CCRYGG	2 cut(s)	1271, 2148
BstEII	GGTNACC	1 cut(s)	2396
BstHHI	GCGC	2 cut(s)	55, 337
BstMAI	GTCTC	2 cut(s)	1973, 2504
BstMWI	GCNNNNNNNGC	4 cut(s)	178, 341, 1282, 2183
BstNI	CCWGG	5 cut(s)	201, 495, 594, 1033, 1622
BstPI	GGTNACC	1 cut(s)	2396
BstSCI	CCNGG	6 cut(s)	199, 493, 592, 770, 1031, 1620
BstSFI	CTRYAG	2 cut(s)	261, 396
BstSLI	GKGCMC	1 cut(s)	1212
BstSNI	TACGTA	1 cut(s)	2368
BstV1I	GCAGC	7 cut(s)	867, 1294, 1348, 1649, 1873, 2314, 2474
BstV2I	GAAGAC	4 cut(s)	1361, 1385, 1599, 2001
BstX2I	RGATCY	5 cut(s)	386, 571, 841, 923, 2123
BstYI	RGATCY	5 cut(s)	386, 571, 841, 923, 2123
BstZ17I	GTATAC	1 cut(s)	525
Bsu36I	CCTNAGG	1 cut(s)	92
BsuI	GTATCC	1 cut(s)	2421
BsuRI	GGCC	8 cut(s)	48, 137, 749, 1037, 1107, 1143, 1813, 2564
BtgI	CCRYGG	2 cut(s)	1271, 2148
BtsIMutI	CAGTG	3 cut(s)	232, 1212, 2258
Cac8I	GCNNGC	1 cut(s)	1105
CaiI	CAGNNNCTG	2 cut(s)	260, 575
CfoI	GCGC	2 cut(s)	55, 337
Cfr13I	GGNCC	9 cut(s)	111, 273, 589, 748, 1035, 1301, 2156, 2426, 2562
CsiI	ACCWGGT	1 cut(s)	1620
Csp6I	GTAC	5 cut(s)	597, 1029, 1409, 1669, 1933
CviQI	GTAC	5 cut(s)	597, 1029, 1409, 1669, 1933
DdeI	CTNAG	3 cut(s)	92, 611, 1985
DraIII	CACNNNGTG	1 cut(s)	1988
EaeI	YGGCCR	3 cut(s)	46, 1105, 1811
Eam1104I	CTCTTC	3 cut(s)	991, 2454, 2510
EarI	CTCTTC	3 cut(s)	991, 2454, 2510
Eco105I	TACGTA	1 cut(s)	2368
Eco130I	CCWWGG	4 cut(s)	1262, 1271, 1966, 2148
Eco147I	AGGCCT	1 cut(s)	1143
Eco24I	GRGCYC	1 cut(s)	91
Eco47I	GGWCC	6 cut(s)	111, 273, 589, 1301, 2156, 2426
Eco57I	CTGAAG	4 cut(s)	369, 972, 1611, 2072
Eco81I	CCTNAGG	1 cut(s)	92
Eco88I	CYCGRG	1 cut(s)	2160
Eco91I	GGTNACC	1 cut(s)	2396
EcoO109I	RGGNCCY	4 cut(s)	111, 273, 589, 2156
EcoO65I	GGTNACC	1 cut(s)	2396
EcoRI	GAATTC	1 cut(s)	1848
EcoRII	CCWGG	5 cut(s)	199, 493, 592, 1031, 1620
EcoT14I	CCWWGG	4 cut(s)	1262, 1271, 1966, 2148
EcoT22I	ATGCAT	2 cut(s)	948, 1459
EcoT38I	GRGCYC	1 cut(s)	91
ErhI	CCWWGG	4 cut(s)	1262, 1271, 1966, 2148
FalI	AAGNNNNNCTT	4 cut(s)	530, 562, 987, 1019
FaqI	GGGAC	4 cut(s)	97, 575, 1173, 2142
FauNDI	CATATG	2 cut(s)	174, 235
FbaI	TGATCA	1 cut(s)	577
FblI	GTMKAC	1 cut(s)	524
Fnu4HI	GCNGC	7 cut(s)	881, 1308, 1337, 1638, 1862, 2303, 2463
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	7 cut(s)	881, 1308, 1337, 1638, 1862, 2303, 2463
FspBI	CTAG	6 cut(s)	116, 1427, 1611, 2120, 2223, 2522
FspI	TGCGCA	2 cut(s)	54, 336
GlaI	GCGC	2 cut(s)	54, 336
GluI	GCNGC	7 cut(s)	881, 1308, 1337, 1638, 1862, 2303, 2463
GsuI	CTGGAG	4 cut(s)	516, 1041, 1158, 2377
HaeIII	GGCC	8 cut(s)	48, 137, 749, 1037, 1107, 1143, 1813, 2564
HapII	CCGG	3 cut(s)	329, 771, 2414
HhaI	GCGC	2 cut(s)	55, 337
Hin6I	GCGC	2 cut(s)	53, 335
HinP1I	GCGC	2 cut(s)	53, 335
HincII	GTYRAC	1 cut(s)	62
HindII	GTYRAC	1 cut(s)	62
HindIII	AAGCTT	1 cut(s)	1533
HpaII	CCGG	3 cut(s)	329, 771, 2414
HphI	GGTGA	6 cut(s)	1315, 1457, 1832, 2038, 2390, 2572
Hpy166II	GTNNAC	7 cut(s)	62, 525, 1210, 1618, 1940, 2101, 2228
Hpy8I	GTNNAC	7 cut(s)	62, 525, 1210, 1618, 1940, 2101, 2228
HpyAV	CCTTC	7 cut(s)	466, 677, 860, 1811, 2147, 2322, 2386
HpyCH4III	ACNGT	5 cut(s)	1084, 1207, 1289, 1937, 2262
HpyCH4IV	ACGT	4 cut(s)	1162, 1633, 1931, 2367
HpyF10VI	GCNNNNNNNGC	4 cut(s)	178, 341, 1282, 2183
HpyF3I	CTNAG	3 cut(s)	92, 611, 1985
HpySE526I	ACGT	4 cut(s)	1162, 1633, 1931, 2367
HspAI	GCGC	2 cut(s)	53, 335
KflI	GGGWCCC	2 cut(s)	111, 589
KpnI	GGTACC	1 cut(s)	1032
Ksp22I	TGATCA	1 cut(s)	577
LmnI	GCTCC	5 cut(s)	86, 235, 1267, 2011, 2443
Lsp1109I	GCAGC	7 cut(s)	867, 1294, 1348, 1649, 1873, 2314, 2474
LweI	GCATC	8 cut(s)	634, 724, 830, 1084, 1090, 1189, 1444, 1594
MabI	ACCWGGT	1 cut(s)	1620
MaeI	CTAG	6 cut(s)	116, 1427, 1611, 2120, 2223, 2522
MaeII	ACGT	4 cut(s)	1162, 1633, 1931, 2367
MaeIII	GTNAC	8 cut(s)	238, 628, 752, 793, 858, 2256, 2380, 2396
MfeI	CAATTG	3 cut(s)	243, 553, 1560
MflI	RGATCY	5 cut(s)	386, 571, 841, 923, 2123
MhlI	GDGCHC	3 cut(s)	91, 232, 1212
MlsI	TGGCCA	3 cut(s)	48, 1107, 1813
MluNI	TGGCCA	3 cut(s)	48, 1107, 1813
MlyI	GAGTC	5 cut(s)	933, 2320, 2368, 2506, 2527
MmeI	TCCRAC	4 cut(s)	926, 1850, 1897, 2453
Mox20I	TGGCCA	3 cut(s)	48, 1107, 1813
Mph1103I	ATGCAT	2 cut(s)	948, 1459
MscI	TGGCCA	3 cut(s)	48, 1107, 1813
MseI	TTAA	6 cut(s)	468, 849, 1464, 2018, 2418, 2538
MslI	CAYNNNNRTG	5 cut(s)	321, 375, 951, 1215, 2387
Msp20I	TGGCCA	3 cut(s)	48, 1107, 1813
MspA1I	CMGCKG	1 cut(s)	1307
MspCI	CTTAAG	2 cut(s)	848, 1463
MspI	CCGG	3 cut(s)	329, 771, 2414
MspR9I	CCNGG	6 cut(s)	201, 495, 594, 772, 1033, 1622
MunI	CAATTG	3 cut(s)	243, 553, 1560
MvaI	CCWGG	5 cut(s)	201, 495, 594, 1033, 1622
MwoI	GCNNNNNNNGC	4 cut(s)	178, 341, 1282, 2183
NciI	CCSGG	1 cut(s)	772
NcoI	CCATGG	2 cut(s)	1271, 2148
NdeI	CATATG	2 cut(s)	174, 235
NmeAIII	GCCGAG	1 cut(s)	2481
NmuCI	GTSAC	5 cut(s)	752, 858, 2256, 2380, 2396
NsbI	TGCGCA	2 cut(s)	54, 336
NsiI	ATGCAT	2 cut(s)	948, 1459
PceI	AGGCCT	1 cut(s)	1143
PfeI	GAWTC	8 cut(s)	23, 142, 310, 411, 1565, 1584, 1972, 2056
PflFI	GACNNNGTC	1 cut(s)	856
PkrI	GCNGC	7 cut(s)	882, 1309, 1338, 1639, 1863, 2304, 2464
PleI	GAGTC	5 cut(s)	933, 2319, 2367, 2505, 2526
PpsI	GAGTC	5 cut(s)	933, 2319, 2367, 2505, 2526
Ppu21I	YACGTR	3 cut(s)	1634, 1932, 2368
PpuMI	RGGWCCY	4 cut(s)	111, 273, 589, 2156
PshBI	ATTAAT	1 cut(s)	2538
Psp5II	RGGWCCY	4 cut(s)	111, 273, 589, 2156
Psp6I	CCWGG	5 cut(s)	199, 493, 592, 1031, 1620
PspEI	GGTNACC	1 cut(s)	2396
PspGI	CCWGG	5 cut(s)	199, 493, 592, 1031, 1620
PspPI	GGNCC	9 cut(s)	111, 273, 589, 748, 1035, 1301, 2156, 2426, 2562
PspPPI	RGGWCCY	4 cut(s)	111, 273, 589, 2156
PstNI	CAGNNNCTG	2 cut(s)	260, 575
PsuI	RGATCY	5 cut(s)	386, 571, 841, 923, 2123
PsyI	GACNNNGTC	1 cut(s)	856
PvuII	CAGCTG	1 cut(s)	1307
RsaI	GTAC	5 cut(s)	598, 1030, 1410, 1670, 1934
RsaNI	GTAC	5 cut(s)	597, 1029, 1409, 1669, 1933
RseI	CAYNNNNRTG	5 cut(s)	321, 375, 951, 1215, 2387
SaqAI	TTAA	6 cut(s)	468, 849, 1464, 2018, 2418, 2538
SatI	GCNGC	7 cut(s)	881, 1308, 1337, 1638, 1862, 2303, 2463
Sau96I	GGNCC	9 cut(s)	111, 273, 589, 748, 1035, 1301, 2156, 2426, 2562
ScaI	AGTACT	1 cut(s)	1670
SchI	GAGTC	5 cut(s)	933, 2320, 2368, 2506, 2527
ScrFI	CCNGG	6 cut(s)	201, 495, 594, 772, 1033, 1622
SduI	GDGCHC	3 cut(s)	91, 232, 1212
SexAI	ACCWGGT	1 cut(s)	1620
SfaNI	GCATC	8 cut(s)	634, 724, 830, 1084, 1090, 1189, 1444, 1594
SfcI	CTRYAG	2 cut(s)	261, 396
SinI	GGWCC	6 cut(s)	111, 273, 589, 1301, 2156, 2426
SmiMI	CAYNNNNRTG	5 cut(s)	321, 375, 951, 1215, 2387
SmlI	CTYRAG	6 cut(s)	695, 848, 1463, 1513, 2037, 2405
SmoI	CTYRAG	6 cut(s)	695, 848, 1463, 1513, 2037, 2405
SnaBI	TACGTA	1 cut(s)	2368
SseBI	AGGCCT	1 cut(s)	1143
SsiI	CCGC	3 cut(s)	621, 690, 2062
SspMI	CTAG	6 cut(s)	116, 1427, 1611, 2120, 2223, 2522
StuI	AGGCCT	1 cut(s)	1143
StyD4I	CCNGG	6 cut(s)	199, 493, 592, 770, 1031, 1620
StyI	CCWWGG	4 cut(s)	1262, 1271, 1966, 2148
TaaI	ACNGT	5 cut(s)	1084, 1207, 1289, 1937, 2262
TaiI	ACGT	4 cut(s)	1165, 1636, 1934, 2370
TaqI	TCGA	3 cut(s)	1012, 1241, 2286
TatI	WGTACW	1 cut(s)	1668
TfiI	GAWTC	8 cut(s)	23, 142, 310, 411, 1565, 1584, 1972, 2056
Tru1I	TTAA	6 cut(s)	468, 849, 1464, 2018, 2418, 2538
Tru9I	TTAA	6 cut(s)	468, 849, 1464, 2018, 2418, 2538
TscAI	CASTG	3 cut(s)	232, 1212, 2265
TseFI	GTSAC	5 cut(s)	752, 858, 2256, 2380, 2396
TseI	GCWGC	7 cut(s)	880, 1307, 1336, 1637, 1861, 2302, 2462
Tsp45I	GTSAC	5 cut(s)	752, 858, 2256, 2380, 2396
TspDTI	ATGAA	6 cut(s)	1409, 1902, 2069, 2121, 2391, 2405
TspGWI	ACGGA	1 cut(s)	1544
TspRI	CASTG	3 cut(s)	232, 1212, 2265
Tth111I	GACNNNGTC	1 cut(s)	856
Vha464I	CTTAAG	2 cut(s)	848, 1463
VneI	GTGCAC	1 cut(s)	1208
VpaK11BI	GGWCC	6 cut(s)	111, 273, 589, 1301, 2156, 2426
VspI	ATTAAT	1 cut(s)	2538
XapI	RAATTY	4 cut(s)	1476, 1570, 1848, 1954
XcmI	CCANNNNNNNNNTGG	3 cut(s)	656, 1269, 1673
XmiI	GTMKAC	1 cut(s)	524
XspI	CTAG	6 cut(s)	116, 1427, 1611, 2120, 2223, 2522
ZrmI	AGTACT	1 cut(s)	1670
Zsp2I	ATGCAT	2 cut(s)	948, 1459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.