Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001557

Physical Location & Seq

Genomic Coordinates Reverse (-)

16199348 .. 16204576

Gene Structure 5229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G015890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2616 bp

ATGGCCAATCCTACTTACCAGGAATCCTTGTCATTTGGAGGCCCAGACCATCCTCAGGGTCAAGAAGAAGTTATTCCATGTAAGAGTGGAACCCTGAAGGTTTTGCTACATGGGTCCCTAGTCATATGCGTCAAGGAGGCCAAAAACCTTCCTGACATGAAGAGTTTTCGCAAGCTTGTGGGGCACACAATTTCGAAGTTGCCTGGGACGAGCCGCAAAAATATAATCAGTTCTCCATATGTTACGATTTCTTTATCAAATGCTGTAATTGCGAGGACCTTTGTGAAGAGTAGTATCGAGAACCCTGTGTGGCGGCAACATTTTGATGTTCCTGTTGCTCATTACGCTTCACAAGTGAACTTTGTTGTGAAACACAGTGATGTTTTCGGCTCTAAGACCATAGGTTTTGTTGGAATCTCAGCTCAAAAGTTGTACTCTGGCATAAAAGTTGAGGGAACCTTCCCTATCCTTGACATCACCAGTGGTAAAAGCTATATGCCTGGAGCTGTGTTGAGCTTGTCAATTAAGTATACCACGATTGAGAAAATGGCATTTTATAATCGCGGAGTAGGTTTAGATCCTGATCATCAAGGGGTCCCTGGTACTTACTTTCCTGTTAGGAAAGGCGGTAAAGTTACTCTTTATCAAGATGCTCATGTTCCTGATGGTTGCCTTCCCAACTTCAAGCTTGATGGCTGTCTTGAGTACGAGCATGGAAATTGTTGGCAAGACATATTTGATGCAATAAGTAAGGCCCACCGTTTGATATACATAACTGGGTGGTCACTGCACCCCAAAGTCAGATTGCTTCGGAATAATAATGGTTCATCAGATAGCACATTAGGTGATCTGCTGAAGACCAAGTCACAGGAAGGTGTAAAAGTTCTGCTTCTTGTTTGGGACGATCCAACTTCTATTAAGGGATTTAAAATGGAAGGGCTCATGCATACCAATGATGAAGACGCTCGACGTTTCTTTAAGGACTCTTCAGTTCAATTTCTACTCTGCCCTCGATCATCAGTCCAAAGCTGGGGGAAAAAGATGGAAGCTGGAATAGTCTATACCCATCATCAGAAAACTGTAATTGTGGACGCTGATGCTGGTCATTTTAAAAGAAAGATCATTGCATTTGTTGGAGGTCTTGACTTGTGCTTGGGACGTTATGATACTCCGGAGCATTCTATATTTAGGACCTTACGTACAGTGCACAAGGATGACAATCGTAACCCGACTTTCTCGAAACCCGTTATTGGGTGTCCAAGGCAGCCATGGCATGATTTGCACAGTAAAATTGATGGTCCAGCTGCTTATGACATCCTCACCAATTTTGAGCAGCGTTGGGGGATGGCTTCAAAACCACATGGTCTTCACAAACTTAAAGAACGAGGACTTCAAAAACTGAAAATACGAGGAGATGATGATGATGATGATGATGCATTACTCAAGATTGAGAAAATTCCTGAAATTCTTAGGATGACAGAGGTTCCTCGCTTGAGTGAGGATGACAAAGAAGCTTGGGATATTCAGGTTTTCCGTTCAATTGATTCCGATTCAGTGAAAGGATTTCCCGAAGACCCTGGAGAGGCTACAAGGATGAACCTTGTTTGTGGGAAAAATGTGCTGATAGACATGAGTATACATGCAGCATATGTAAAAGCAATCCGTGCGGCTCAACATTTTATTTACATAGAGAACCAGTACTTTCTTGGATCATCATATAATTGGAAGTCAAACATTGGTGATAGTGATACAGGTGCAAACAATTTGATACCGATGGAAATCGCTCTGAAAATAGCAAACAAAATCAAAGCAAATGAGAAGTTTTCTGTATATATTGTCATCCCCATGTGGCCAGAAGGTGATCCCAATGATATGCCTCTTCAAAGAATTCTCCTTTGGCAGCATAAAACAATGCAAATGATGTATGAAATCATTTACAAGGCTCTAAAGGAGGTTGGGCTCGAAAATAAGAACTGTCCACAAGACTATTTGAATTTCTTTTGCCTCGGAAATCGTGAGAAACCAAGTGGAGATGCTGCAAATAATTTAAGTGCAGCAAACACTCCCGAAGTACTCACTCAGAATAGTCGGCGATTTATGATTTATGTCCATTCTAAAGGAATGATAGTGGATGATGAATATGTTATAGTGGGATCTGCAAATATCAATCAGCGATCCATGGAAGGTCTCCGAGATACTGAAATAGCAATGGGGGCTTATCAGCCTCATCATACTTGGGCGAGAAAACTCTCAAGTCCACACGGAAAGATATATGGATACAGAATGTCACTGTGGGCAGAGCATTTAGGACTTGTTGAAGAATGTTTCAATCAGCCAGAGAGTCTTGAATGTGTTCAAAGGGTAAGGTCTTTGGGTGAGCAGAACTGGAGTCAATACTTGGACGACGTAGTCACAGAAATGAAGGGTCACCTCCTCAAGTATCCGGTTGAAGTTGGTCCAACGGGCACGGTGGGGCCTCTTCCAGGGTGTCCAACATTTCCAGACGTTGGTGGCAATATATTGGGGAGTCTCGGCGACATAAAAGTAGTGAAGAATCTGCGTATCAGTAGCAGAGGGAGGACAATATCACTTAGAGGCGCCATCATCACCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006629 GO:0006643 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008289 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009816 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0022626 GO:0030054 GO:0032501 GO:0032502 GO:0032991 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0071704 GO:0071944 GO:0098542 GO:1901981 GO:1902936 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

871

Amino Acids

97.56

Weight (kDa)

8.31

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	38 - 155	5e-12	C2 domain
PLDc_2	PF13091	680 - 737	1.6e-06	PLD-like domain
PLDc	PF00614	701 - 726	2.8e-08	Phospholipase D Active site motif
PLD_C	PF12357	773 - 843	1.1e-28	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11830 AT4G11830 AT4G11830 AT4G11830 AT4G11840 AT4G11840 AT4G11850
fragaria_vesca	FvH4_5g01274 FvH4_5g01290 FvH4_5g01290 FvH4_5g01290
malus_domestica	MD04G1069600.v1.1
prunus_persica	Prupe.5G088300_v2.0.a1 Prupe.5G088300_v2.0.a1
pyrus_communis	pycom04g06330
rosa_chinensis	RchiOBHm_Chr4g0413221 RchiOBHm_Chr7g0199651 RchiOBHm_Chr7g0199691 RchiOBHm_Chr7g0199711 RchiOBHm_Chr7g0199731
rosa_laevigata	RLG00000003775 RLG00000003776 RLG00000003777 RLG00000003778 RLG00000003779
rosa_multiflora	Rmu_co8400099.1_g000001 Rmu_sc0002748.1_g000025 Rmu_sc0002748.1_g000027 Rmu_sc0002748.1_g000028 Rmu_sc0009191.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256480 Rroxscaffold_3G00256490 Rroxscaffold_3G00256520
rosa_rugosa	Rorug07G0055600 Rorug07G0055800 Rorug07G0055900
rosa_samantha	Rh7AG180700 Rh7AG181000 Rh7AG181200 Rh7BG183600 Rh7BG183900 Rh7BG184100 Rh7CG190400 Rh7CG190600 Rh7CG190700 Rh7DG183600 Rh7DG183800
rosa_wichuraiana	Rw7G015870 Rw7G015880 Rw7G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	558
AasI	GACNNNNNNGTC	1 cut(s)	2408
AccB1I	GGYRCC	1 cut(s)	2597
AccB7I	CCANNNNNTGG	1 cut(s)	2507
AccI	GTMKAC	2 cut(s)	530, 1636
AccII	CGCG	1 cut(s)	564
AccIII	TCCGGA	1 cut(s)	1171
AciI	CCGC	5 cut(s)	214, 313, 564, 627, 1667
AclWI	GGATC	6 cut(s)	572, 899, 1717, 1856, 2161, 2169
AcoI	YGGCCR	2 cut(s)	3, 1850
AcsI	RAATTY	4 cut(s)	1455, 1464, 1887, 1993
AcuI	CTGAAG	3 cut(s)	116, 875, 972
AcyI	GRCGYC	1 cut(s)	2598
AfaI	GTAC	6 cut(s)	434, 604, 707, 1201, 1700, 2073
AfiI	CCNNNNNNNGG	7 cut(s)	55, 1030, 1250, 1251, 1582, 2483, 2507
AjnI	CCWGG	6 cut(s)	18, 202, 499, 598, 1576, 2482
AjuI	GAANNNNNNNTTGG	2 cut(s)	1879, 1911
Alw21I	GWGCWC	1 cut(s)	1209
Alw26I	GTCTC	2 cut(s)	2192, 2534
Alw44I	GTGCAC	1 cut(s)	1205
AlwI	GGATC	6 cut(s)	572, 899, 1717, 1856, 2161, 2169
Aor13HI	TCCGGA	1 cut(s)	1171
AoxI	GGCC	6 cut(s)	3, 40, 138, 753, 1850, 2474
ApaLI	GTGCAC	1 cut(s)	1205
ApeKI	GCWGC	7 cut(s)	1264, 1304, 1333, 1643, 1900, 2036, 2054
ApoI	RAATTY	4 cut(s)	1455, 1464, 1887, 1993
Asp700I	GAANNNNTTC	2 cut(s)	72, 2352
AspLEI	GCGC	1 cut(s)	2600
AspS9I	GGNCC	9 cut(s)	41, 114, 276, 595, 754, 1191, 1298, 2456, 2474
AsuHPI	GGTGA	8 cut(s)	469, 857, 1312, 1751, 1871, 2387, 2420, 2599
AsuII	TTCGAA	1 cut(s)	194
AvaII	GGWCC	6 cut(s)	114, 276, 595, 1191, 1298, 2456
AxyI	CCTNAGG	1 cut(s)	54
BaeGI	GKGCMC	3 cut(s)	186, 1209, 2468
BalI	TGGCCA	2 cut(s)	5, 1852
BanI	GGYRCC	1 cut(s)	2597
BanII	GRGCYC	2 cut(s)	942, 1962
BbsI	GAAGAC	4 cut(s)	863, 966, 1358, 1578
Bbv12I	GWGCWC	1 cut(s)	1209
BbvI	GCAGC	7 cut(s)	1276, 1291, 1345, 1655, 1912, 2023, 2066
BccI	CCATC	9 cut(s)	57, 659, 686, 1036, 1074, 1289, 1339, 1768, 2609
BciT130I	CCWGG	6 cut(s)	20, 204, 501, 600, 1578, 2484
BciVI	GTATCC	2 cut(s)	2270, 2451
BclI	TGATCA	1 cut(s)	583
BcoDI	GTCTC	2 cut(s)	2192, 2534
BfaI	CTAG	1 cut(s)	119
BfoI	RGCGCY	1 cut(s)	2601
BfuI	GTATCC	2 cut(s)	2270, 2451
BmcAI	AGTACT	2 cut(s)	1700, 2073
Bme1390I	CCNGG	6 cut(s)	20, 204, 501, 600, 1578, 2484
Bme18I	GGWCC	6 cut(s)	114, 276, 595, 1191, 1298, 2456
BmgT120I	GGNCC	9 cut(s)	41, 114, 276, 595, 754, 1191, 1298, 2456, 2474
BmiI	GGNNCC	9 cut(s)	91, 115, 116, 457, 596, 597, 1485, 2475, 2599
BmrFI	CCNGG	6 cut(s)	20, 204, 501, 600, 1578, 2484
BmrI	ACTGGG	1 cut(s)	786
BmsI	GCATC	5 cut(s)	640, 730, 1087, 1423, 2023
BmuI	ACTGGG	1 cut(s)	786
BpiI	GAAGAC	4 cut(s)	863, 966, 1358, 1578
BpmI	CTGGAG	3 cut(s)	522, 1599, 2407
Bpu14I	TTCGAA	1 cut(s)	194
BpuEI	CTTGAG	5 cut(s)	722, 1427, 1513, 2236, 2420
BsaAI	YACGTR	1 cut(s)	1199
BsaBI	GATNNNNATC	3 cut(s)	582, 1218, 1778
BsaHI	GRCGYC	1 cut(s)	2598
BsaI	GGTCTC	1 cut(s)	2192
BsaJI	CCNNGG	8 cut(s)	203, 598, 1259, 1268, 1576, 2005, 2178, 2483
BsaWI	WCCGGW	2 cut(s)	1171, 2443
Bsc4I	CCNNNNNNNGG	7 cut(s)	55, 1030, 1250, 1251, 1582, 2483, 2507
Bse1I	ACTGG	4 cut(s)	480, 781, 1696, 2390
Bse21I	CCTNAGG	1 cut(s)	54
Bse3DI	GCAATG	2 cut(s)	1122, 2214
Bse8I	GATNNNNATC	3 cut(s)	582, 1218, 1778
BseAI	TCCGGA	1 cut(s)	1171
BseBI	CCWGG	6 cut(s)	20, 204, 501, 600, 1578, 2484
BseDI	CCNNGG	8 cut(s)	203, 598, 1259, 1268, 1576, 2005, 2178, 2483
BseGI	GGATG	9 cut(s)	49, 1219, 1314, 1350, 1479, 1507, 1599, 1839, 2137
BseJI	GATNNNNATC	3 cut(s)	582, 1218, 1778
BseLI	CCNNNNNNNGG	7 cut(s)	55, 1030, 1250, 1251, 1582, 2483, 2507
BseMI	GCAATG	2 cut(s)	1122, 2214
BseMII	CTCAG	3 cut(s)	68, 432, 2093
BseNI	ACTGG	4 cut(s)	480, 781, 1696, 2390
BseRI	GAGGAG	2 cut(s)	1425, 2423
BseSI	GKGCMC	3 cut(s)	186, 1209, 2468
BseXI	GCAGC	7 cut(s)	1276, 1291, 1345, 1655, 1912, 2023, 2066
BseYI	CCCAGC	1 cut(s)	1029
BsgI	GTGCAG	2 cut(s)	773, 2073
Bsh1236I	CGCG	1 cut(s)	564
BshFI	GGCC	6 cut(s)	5, 42, 140, 755, 1852, 2476
BshNI	GGYRCC	1 cut(s)	2597
BsiHKAI	GWGCWC	1 cut(s)	1209
BsiSI	CCGG	2 cut(s)	1172, 2444
BslFI	GGGAC	5 cut(s)	100, 220, 581, 914, 1170
BslI	CCNNNNNNNGG	7 cut(s)	55, 1030, 1250, 1251, 1582, 2483, 2507
BsmAI	GTCTC	2 cut(s)	2192, 2534
BsmFI	GGGAC	5 cut(s)	100, 220, 581, 914, 1170
BsmI	GAATGC	1 cut(s)	1177
BsnI	GGCC	6 cut(s)	5, 42, 140, 755, 1852, 2476
Bso31I	GGTCTC	1 cut(s)	2192
Bsp119I	TTCGAA	1 cut(s)	194
Bsp1286I	GDGCHC	5 cut(s)	186, 942, 1209, 1962, 2468
Bsp13I	TCCGGA	1 cut(s)	1171
Bsp19I	CCATGG	2 cut(s)	1268, 2178
BspACI	CCGC	5 cut(s)	214, 313, 564, 627, 1667
BspANI	GGCC	6 cut(s)	5, 42, 140, 755, 1852, 2476
BspCNI	CTCAG	3 cut(s)	67, 431, 2092
BspEI	TCCGGA	1 cut(s)	1171
BspFNI	CGCG	1 cut(s)	564
BspLI	GGNNCC	9 cut(s)	91, 115, 116, 457, 596, 597, 1485, 2475, 2599
BspPI	GGATC	6 cut(s)	572, 899, 1717, 1856, 2161, 2169
BspT104I	TTCGAA	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	2597
BspTNI	GGTCTC	1 cut(s)	2192
BsrDI	GCAATG	2 cut(s)	1122, 2214
BsrI	ACTGG	4 cut(s)	480, 781, 1696, 2390
BssECI	CCNNGG	8 cut(s)	203, 598, 1259, 1268, 1576, 2005, 2178, 2483
BssNAI	GTATAC	2 cut(s)	531, 1637
BssNI	GRCGYC	1 cut(s)	2598
BssT1I	CCWWGG	3 cut(s)	1259, 1268, 2178
Bst1107I	GTATAC	2 cut(s)	531, 1637
Bst2UI	CCWGG	6 cut(s)	20, 204, 501, 600, 1578, 2484
Bst4CI	ACNGT	8 cut(s)	377, 761, 1081, 1204, 1286, 1976, 2292, 2470
Bst6I	CTCTTC	5 cut(s)	155, 281, 991, 1884, 2484
BstACI	GRCGYC	1 cut(s)	2598
BstAPI	GCANNNNNTGC	2 cut(s)	1279, 1664
BstBAI	YACGTR	1 cut(s)	1199
BstBI	TTCGAA	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	173
BstDEI	CTNAG	6 cut(s)	54, 393, 418, 1469, 2079, 2591
BstDSI	CCRYGG	2 cut(s)	1268, 2178
BstEII	GGTNACC	1 cut(s)	2426
BstENI	CCTNNNNNAGG	1 cut(s)	2481
BstF5I	GGATG	9 cut(s)	49, 1219, 1314, 1350, 1479, 1507, 1599, 1839, 2137
BstFNI	CGCG	1 cut(s)	564
BstH2I	RGCGCY	1 cut(s)	2601
BstHHI	GCGC	1 cut(s)	2600
BstMAI	GTCTC	2 cut(s)	2192, 2534
BstMWI	GCNNNNNNNGC	7 cut(s)	181, 269, 344, 1270, 1279, 1664, 2213
BstNI	CCWGG	6 cut(s)	20, 204, 501, 600, 1578, 2484
BstNSI	RCATGY	1 cut(s)	1643
BstPI	GGTNACC	1 cut(s)	2426
BstSCI	CCNGG	6 cut(s)	18, 202, 499, 598, 1576, 2482
BstSLI	GKGCMC	3 cut(s)	186, 1209, 2468
BstSNI	TACGTA	1 cut(s)	1199
BstUI	CGCG	1 cut(s)	564
BstV1I	GCAGC	7 cut(s)	1276, 1291, 1345, 1655, 1912, 2023, 2066
BstV2I	GAAGAC	4 cut(s)	863, 966, 1358, 1578
BstX2I	RGATCY	2 cut(s)	577, 2153
BstYI	RGATCY	2 cut(s)	577, 2153
BstZ17I	GTATAC	2 cut(s)	531, 1637
Bsu36I	CCTNAGG	1 cut(s)	54
BsuI	GTATCC	2 cut(s)	2270, 2451
BsuRI	GGCC	6 cut(s)	5, 42, 140, 755, 1852, 2476
BtgI	CCRYGG	2 cut(s)	1268, 2178
BtsCI	GGATG	9 cut(s)	49, 1219, 1314, 1350, 1479, 1507, 1599, 1839, 2137
BtsI	GCAGTG	1 cut(s)	785
BtsIMutI	CAGTG	6 cut(s)	382, 487, 785, 1209, 1560, 2288
Cac8I	GCNNGC	1 cut(s)	173
CfoI	GCGC	1 cut(s)	2600
Cfr13I	GGNCC	9 cut(s)	41, 114, 276, 595, 754, 1191, 1298, 2456, 2474
CseI	GACGC	3 cut(s)	118, 971, 1100
Csp6I	GTAC	6 cut(s)	433, 603, 706, 1200, 1699, 2072
CviQI	GTAC	6 cut(s)	433, 603, 706, 1200, 1699, 2072
DdeI	CTNAG	6 cut(s)	54, 393, 418, 1469, 2079, 2591
DinI	GGCGCC	1 cut(s)	2599
DraI	TTTAAA	2 cut(s)	928, 1111
DrdI	GACNNNNNNGTC	1 cut(s)	2408
DseDI	GACNNNNNNGTC	1 cut(s)	2408
EaeI	YGGCCR	2 cut(s)	3, 1850
Eam1104I	CTCTTC	5 cut(s)	155, 281, 991, 1884, 2484
EarI	CTCTTC	5 cut(s)	155, 281, 991, 1884, 2484
Eco105I	TACGTA	1 cut(s)	1199
Eco130I	CCWWGG	3 cut(s)	1259, 1268, 2178
Eco24I	GRGCYC	2 cut(s)	942, 1962
Eco31I	GGTCTC	1 cut(s)	2192
Eco47I	GGWCC	6 cut(s)	114, 276, 595, 1191, 1298, 2456
Eco57I	CTGAAG	3 cut(s)	116, 875, 972
Eco81I	CCTNAGG	1 cut(s)	54
Eco91I	GGTNACC	1 cut(s)	2426
EcoNI	CCTNNNNNAGG	1 cut(s)	2481
EcoO109I	RGGNCCY	5 cut(s)	114, 276, 595, 1191, 2474
EcoO65I	GGTNACC	1 cut(s)	2426
EcoRI	GAATTC	1 cut(s)	1887
EcoRII	CCWGG	6 cut(s)	18, 202, 499, 598, 1576, 2482
EcoT14I	CCWWGG	3 cut(s)	1259, 1268, 2178
EcoT22I	ATGCAT	2 cut(s)	948, 1438
EcoT38I	GRGCYC	2 cut(s)	942, 1962
EgeI	GGCGCC	1 cut(s)	2599
EheI	GGCGCC	1 cut(s)	2599
ErhI	CCWWGG	3 cut(s)	1259, 1268, 2178
FalI	AAGNNNNNCTT	4 cut(s)	624, 656, 873, 905
FaqI	GGGAC	5 cut(s)	100, 220, 581, 914, 1170
FauNDI	CATATG	3 cut(s)	125, 238, 1648
FbaI	TGATCA	1 cut(s)	583
FblI	GTMKAC	2 cut(s)	530, 1636
FokI	GGATG	9 cut(s)	36, 1226, 1301, 1357, 1486, 1514, 1606, 1826, 2144
FriOI	GRGCYC	2 cut(s)	942, 1962
FspBI	CTAG	1 cut(s)	119
GlaI	GCGC	1 cut(s)	2599
GsaI	CCCAGC	1 cut(s)	1033
GsuI	CTGGAG	3 cut(s)	522, 1599, 2407
HaeII	RGCGCY	1 cut(s)	2601
HaeIII	GGCC	6 cut(s)	5, 42, 140, 755, 1852, 2476
HapII	CCGG	2 cut(s)	1172, 2444
HgaI	GACGC	3 cut(s)	118, 971, 1100
HhaI	GCGC	1 cut(s)	2600
Hin1I	GRCGYC	1 cut(s)	2598
Hin6I	GCGC	1 cut(s)	2598
HinP1I	GCGC	1 cut(s)	2598
HindIII	AAGCTT	3 cut(s)	173, 686, 1512
HinfI	GANTC	9 cut(s)	23, 414, 983, 1544, 1550, 2341, 2389, 2527, 2554
HpaII	CCGG	2 cut(s)	1172, 2444
HphI	GGTGA	8 cut(s)	469, 857, 1312, 1751, 1871, 2387, 2420, 2599
Hpy166II	GTNNAC	7 cut(s)	358, 531, 1090, 1207, 1637, 1979, 2258
Hpy188I	TCNGA	9 cut(s)	803, 813, 832, 1074, 1549, 1788, 2009, 2082, 2192
Hpy8I	GTNNAC	7 cut(s)	358, 531, 1090, 1207, 1637, 1979, 2258
Hpy99I	CGWCG	2 cut(s)	972, 2408
HpyAV	CCTTC	9 cut(s)	91, 158, 469, 683, 866, 929, 1850, 2177, 2416
HpyCH4III	ACNGT	8 cut(s)	377, 761, 1081, 1204, 1286, 1976, 2292, 2470
HpyCH4IV	ACGT	5 cut(s)	970, 1159, 1198, 2406, 2505
HpyF10VI	GCNNNNNNNGC	7 cut(s)	181, 269, 344, 1270, 1279, 1664, 2213
HpyF3I	CTNAG	6 cut(s)	54, 393, 418, 1469, 2079, 2591
HpySE526I	ACGT	5 cut(s)	970, 1159, 1198, 2406, 2505
Hsp92I	GRCGYC	1 cut(s)	2598
HspAI	GCGC	1 cut(s)	2598
KasI	GGCGCC	1 cut(s)	2597
KflI	GGGWCCC	2 cut(s)	114, 595
Kpn2I	TCCGGA	1 cut(s)	1171
Ksp22I	TGATCA	1 cut(s)	583
LmnI	GCTCC	2 cut(s)	503, 1174
Lsp1109I	GCAGC	7 cut(s)	1276, 1291, 1345, 1655, 1912, 2023, 2066
LweI	GCATC	5 cut(s)	640, 730, 1087, 1423, 2023
MaeI	CTAG	1 cut(s)	119
MaeII	ACGT	5 cut(s)	970, 1159, 1198, 2406, 2505
MaeIII	GTNAC	8 cut(s)	241, 634, 783, 864, 1223, 2286, 2410, 2426
MfeI	CAATTG	1 cut(s)	1539
MflI	RGATCY	2 cut(s)	577, 2153
MhlI	GDGCHC	5 cut(s)	186, 942, 1209, 1962, 2468
MlsI	TGGCCA	2 cut(s)	5, 1852
MluNI	TGGCCA	2 cut(s)	5, 1852
Mly113I	GGCGCC	1 cut(s)	2598
MlyI	GAGTC	4 cut(s)	977, 2350, 2398, 2536
MmeI	TCCRAC	5 cut(s)	391, 932, 1114, 2483, 2516
Mox20I	TGGCCA	2 cut(s)	5, 1852
Mph1103I	ATGCAT	2 cut(s)	948, 1438
MroI	TCCGGA	1 cut(s)	1171
MroXI	GAANNNNTTC	2 cut(s)	72, 2352
MscI	TGGCCA	2 cut(s)	5, 1852
MseI	TTAA	7 cut(s)	525, 918, 927, 978, 1110, 1377, 2048
MslI	CAYNNNNRTG	6 cut(s)	324, 378, 951, 1212, 1844, 2417
Msp20I	TGGCCA	2 cut(s)	5, 1852
MspA1I	CMGCKG	1 cut(s)	1304
MspI	CCGG	2 cut(s)	1172, 2444
MspR9I	CCNGG	6 cut(s)	20, 204, 501, 600, 1578, 2484
MunI	CAATTG	1 cut(s)	1539
Mva1269I	GAATGC	1 cut(s)	1177
MvaI	CCWGG	6 cut(s)	20, 204, 501, 600, 1578, 2484
MvnI	CGCG	1 cut(s)	564
MwoI	GCNNNNNNNGC	7 cut(s)	181, 269, 344, 1270, 1279, 1664, 2213
NarI	GGCGCC	1 cut(s)	2598
NcoI	CCATGG	2 cut(s)	1268, 2178
NdeI	CATATG	3 cut(s)	125, 238, 1648
NlaIV	GGNNCC	9 cut(s)	91, 115, 116, 457, 596, 597, 1485, 2475, 2599
NmeAIII	GCCGAG	1 cut(s)	2511
NmuCI	GTSAC	5 cut(s)	783, 864, 2286, 2410, 2426
NsiI	ATGCAT	2 cut(s)	948, 1438
NspI	RCATGY	1 cut(s)	1643
NspV	TTCGAA	1 cut(s)	194
PctI	GAATGC	1 cut(s)	1177
PdmI	GAANNNNTTC	2 cut(s)	72, 2352
PfeI	GAWTC	5 cut(s)	23, 414, 1544, 1550, 2554
PflFI	GACNNNGTC	2 cut(s)	862, 2408
PflMI	CCANNNNNTGG	1 cut(s)	2507
PleI	GAGTC	4 cut(s)	977, 2349, 2397, 2535
PluTI	GGCGCC	1 cut(s)	2601
PpsI	GAGTC	4 cut(s)	977, 2349, 2397, 2535
Ppu21I	YACGTR	1 cut(s)	1199
PpuMI	RGGWCCY	4 cut(s)	114, 276, 595, 1191
PsiI	TTATAA	1 cut(s)	558
Psp5II	RGGWCCY	4 cut(s)	114, 276, 595, 1191
Psp6I	CCWGG	6 cut(s)	18, 202, 499, 598, 1576, 2482
PspEI	GGTNACC	1 cut(s)	2426
PspFI	CCCAGC	1 cut(s)	1029
PspGI	CCWGG	6 cut(s)	18, 202, 499, 598, 1576, 2482
PspN4I	GGNNCC	9 cut(s)	91, 115, 116, 457, 596, 597, 1485, 2475, 2599
PspPI	GGNCC	9 cut(s)	41, 114, 276, 595, 754, 1191, 1298, 2456, 2474
PspPPI	RGGWCCY	4 cut(s)	114, 276, 595, 1191
PsuI	RGATCY	2 cut(s)	577, 2153
PsyI	GACNNNGTC	2 cut(s)	862, 2408
PvuII	CAGCTG	1 cut(s)	1304
RsaI	GTAC	6 cut(s)	434, 604, 707, 1201, 1700, 2073
RsaNI	GTAC	6 cut(s)	433, 603, 706, 1200, 1699, 2072
RseI	CAYNNNNRTG	6 cut(s)	324, 378, 951, 1212, 1844, 2417
SaqAI	TTAA	7 cut(s)	525, 918, 927, 978, 1110, 1377, 2048
Sau96I	GGNCC	9 cut(s)	41, 114, 276, 595, 754, 1191, 1298, 2456, 2474
ScaI	AGTACT	2 cut(s)	1700, 2073
SchI	GAGTC	4 cut(s)	977, 2350, 2398, 2536
ScrFI	CCNGG	6 cut(s)	20, 204, 501, 600, 1578, 2484
SduI	GDGCHC	5 cut(s)	186, 942, 1209, 1962, 2468
SfaNI	GCATC	5 cut(s)	640, 730, 1087, 1423, 2023
SfoI	GGCGCC	1 cut(s)	2599
SfuI	TTCGAA	1 cut(s)	194
SinI	GGWCC	6 cut(s)	114, 276, 595, 1191, 1298, 2456
SmiMI	CAYNNNNRTG	6 cut(s)	324, 378, 951, 1212, 1844, 2417
SmlI	CTYRAG	5 cut(s)	701, 1442, 1492, 2251, 2435
SmoI	CTYRAG	5 cut(s)	701, 1442, 1492, 2251, 2435
SnaBI	TACGTA	1 cut(s)	1199
SsiI	CCGC	5 cut(s)	214, 313, 564, 627, 1667
SspDI	GGCGCC	1 cut(s)	2597
SspMI	CTAG	1 cut(s)	119
StyD4I	CCNGG	6 cut(s)	18, 202, 499, 598, 1576, 2482
StyI	CCWWGG	3 cut(s)	1259, 1268, 2178
TaaI	ACNGT	8 cut(s)	377, 761, 1081, 1204, 1286, 1976, 2292, 2470
TaiI	ACGT	5 cut(s)	973, 1162, 1201, 2409, 2508
TaqI	TCGA	6 cut(s)	194, 297, 967, 1012, 1238, 1962
TatI	WGTACW	3 cut(s)	432, 1698, 2071
TauI	GCSGC	3 cut(s)	216, 316, 1670
TfiI	GAWTC	5 cut(s)	23, 414, 1544, 1550, 2554
Tru1I	TTAA	7 cut(s)	525, 918, 927, 978, 1110, 1377, 2048
Tru9I	TTAA	7 cut(s)	525, 918, 927, 978, 1110, 1377, 2048
TscAI	CASTG	6 cut(s)	382, 487, 792, 1209, 1560, 2295
TseFI	GTSAC	5 cut(s)	783, 864, 2286, 2410, 2426
TseI	GCWGC	7 cut(s)	1264, 1304, 1333, 1643, 1900, 2036, 2054
Tsp45I	GTSAC	5 cut(s)	783, 864, 2286, 2410, 2426
TspDTI	ATGAA	7 cut(s)	173, 816, 972, 1610, 1941, 2151, 2435
TspGWI	ACGGA	3 cut(s)	1523, 1652, 2277
TspRI	CASTG	6 cut(s)	382, 487, 792, 1209, 1560, 2295
Tth111I	GACNNNGTC	2 cut(s)	862, 2408
Van91I	CCANNNNNTGG	1 cut(s)	2507
VneI	GTGCAC	1 cut(s)	1205
VpaK11BI	GGWCC	6 cut(s)	114, 276, 595, 1191, 1298, 2456
XagI	CCTNNNNNAGG	1 cut(s)	2481
XapI	RAATTY	4 cut(s)	1455, 1464, 1887, 1993
XceI	RCATGY	1 cut(s)	1643
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1266, 1703
XmiI	GTMKAC	2 cut(s)	530, 1636
XmnI	GAANNNNTTC	2 cut(s)	72, 2352
XspI	CTAG	1 cut(s)	119
ZrmI	AGTACT	2 cut(s)	1700, 2073
Zsp2I	ATGCAT	2 cut(s)	948, 1438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.