Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0001557

Physical Location & Seq

Genomic Coordinates Reverse (-)

16178561 .. 16186140

Gene Structure 7580 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G015870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2433 bp

ATGCTCATATTTACGCACCTCACAAACACAGTGGATCCATGTCACTCAAGGGAGAGCTCACCAACTCTGGGGGATATTGTTGCAAGATTGCCTGGGACTGGTAACAACAAGATAACGAGTGATCCTTATGTCACGGTGTCGGTTGCAGGTGCTGTAGTTGGGAGGACTTTTGTGATCAGTAATAGTGAGAACCCTGTTTGGGAGCAACATTTTGATGTTCCGGTTGCGCATTATGCTTCAGAAGTGCAATTTGTTGTGAAAGATAGTGATGTTGTGGGTTCCCAGCTCATAGGTGTTGTAGCAATCCCAGTTGAGCGGGTATATTCTGGGATCAAAGTTGAGGGCACCTTTCCAATCCTTGGTTCCAATGGGAAGCCCTGTAAGCCTGGAGCTGTTTTGACCTTATCGATTCTCTATGTTCCTATTGAAAAATTGACCTCTTATGATAATGGGGTAGGTTCAGATCCTGATCATCAAGGGGTTCCTGGTACTTACTTTCCTGTTAGGAAAGGCGGTAAGGTTACTCTGTATCAAGATGCCCATGTTCCTGATGGTTGCCTTCCAAGTATCAAGCTTGACGACAATGTTGAGTATGAGCATGGGAGTTGTTGGCAAGACATATTTGATGCAATTAGTCAGGCCCGTCGTTTGATATACATTGTGGGGTGGTCGGTGTACCACAAAGTTAGGTTGCTCCGGGATAATAATGGCAGAACAGATTGCATACTAGGTGATCTTCTTAAGAACAAGTCACAGGAAGGTGTGAGAGTGTTGCTTCTTGTTTGGGATGATCCAACTTCAAGGAGCATTATGGGATATAAAACGGATGGAATTATGCAAACCAATGATGAGGAAACTCGCCGTTTCTTTAAGCATTCTTCAGTCCAAGTGCTACTTTGCCCTCGATCAGCTGGAAAGGGTAGCTGGGCCAAAAAGCAGGAAGTCGGAACAATCTACACCCACCATCAGAAAACAGTGCTTGTTGATGCTGATGCAGGTCATTCTAAAAGAAAGATCATTGCATTTGTTGGTGGTCTTGATTTGTGCCTGGGGCGCTACGATACTCCAGAGCATCCTATTTTTAGGACTTTACAGACAGTCCACAAGGATGACAATCGTAACCCTACTTTTTCGGACCGTGTTGTTGGTTGTCCAAGGCAGCCATGGCATGATTTGCACAGTAAAATTGAGGGTCCAGCAGCATACGATATCCTTACCAATTTTCAGGAGCGTTGGTTAAAAGCTTCAAAACCACGTGGGATGCAGAAACTAAAAGCACTACATGATGATGCATTACTCAAGATTGAGAGGATCCCGGAAATTATGGGAATGGCAGATCTTCCTCAACTGAGTGAGGATGATTTAGAAGCTTGGGATGTTCAGGTTTTTCGTTCAATTGATTCCAATTCTGTGAGAGGATTTCCAGAAGACCCAAAAGATGCTTCACGCATGAACCTGGTGTGTGGGAAGAATGTGCTGATAGACATGAGTATACATACCGCATATGTCAAAGCAATTCGCGCTGCTCAACATTTCATTTACATAGAGAACCAGTACTTCCTTGGATCATCATATAATTGGACCTTATACAATGATTTAGGTGCAAATAACTTGATACCAATGGAAATTGCTCTCAAAATTGTGAATAAAATTAAAGCAAACGAGAGGTTTTCTGTATATATTGTTATCCCCATGTGGCCGGAAGGTGTTCCTACAAGCAGTCCTCTTCAACGAATTCTCTTTTGGCAGCACAAAACGATGCAAATGATGTATGAAATGATTTACAAAGCTCTACATGAGGCTGGACTTCACAATAAATATTGTCCACAAGACTATTTGAATTTCTTTTGCCTTGGTAATCGTGAAAAACCAAGTGGTGAAGAAAGTTCTGCTGCAAAAAAATCAACTGAAGTAAACAAAAAAGAAGCAAACACTGCTCAAGCACTCACTCGGAAGAACCGGCGCTTTATGATTTATGTCCATTCAAAAGGAATGATAGTGGACGATGAATATGTCATATTAGGATCTGCAAATATCAATCAGCGATCCATGGAAGGTACGCGAGATACTGAAATAGCAATGGGGGCATATCAGCCTCATCATACCTGGGCAAGGAAGCTCTCAAGTCCACACGGACAGATATATGGATATAGAACATCACTTTGGGCGGAGCATATTGGTTTTCTTGAAGACTCTTTCAACCAACCAGAGAGTCTCGAATGTGTGCAGCGGGTAAGATCTTTGAGCGAGCAGAACTGGAGGCAGTATGTTGCTGATGAGATTACAGAAATGAAGGGCCACCTGCTGAAATATCCGGTTGAAGTAGATCAAATGGGCAAGGTGAAGCATCTTGCAGGCTGCACAACATTTCCAGATGTTGGTGGCAACATACTTGGGGATTTTATAGCCATCCAAGAAAATCTCACTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006629 GO:0006643 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008289 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009816 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0022626 GO:0030054 GO:0032501 GO:0032502 GO:0032991 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0071704 GO:0071944 GO:0098542 GO:1901981 GO:1902936 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

810

Amino Acids

91.24

Weight (kDa)

6.58

Isoelectric Point (pI)

37.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	37 - 118	2.6e-13	C2 domain
PLDc_2	PF13091	634 - 694	8.1e-07	PLD-like domain
PLDc	PF00614	658 - 683	7.8e-08	Phospholipase D Active site motif
PLD_C	PF12357	730 - 800	2.5e-30	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11830 AT4G11830 AT4G11830 AT4G11830 AT4G11840 AT4G11840 AT4G11850
fragaria_vesca	FvH4_5g01274 FvH4_5g01290 FvH4_5g01290 FvH4_5g01290
malus_domestica	MD04G1069600.v1.1
prunus_persica	Prupe.5G088300_v2.0.a1 Prupe.5G088300_v2.0.a1
pyrus_communis	pycom04g06330
rosa_chinensis	RchiOBHm_Chr4g0413221 RchiOBHm_Chr7g0199651 RchiOBHm_Chr7g0199691 RchiOBHm_Chr7g0199711 RchiOBHm_Chr7g0199731
rosa_laevigata	RLG00000003775 RLG00000003776 RLG00000003777 RLG00000003778 RLG00000003779
rosa_multiflora	Rmu_co8400099.1_g000001 Rmu_sc0002748.1_g000025 Rmu_sc0002748.1_g000027 Rmu_sc0002748.1_g000028 Rmu_sc0009191.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256480 Rroxscaffold_3G00256490 Rroxscaffold_3G00256520
rosa_rugosa	Rorug07G0055600 Rorug07G0055800 Rorug07G0055900
rosa_samantha	Rh7AG180700 Rh7AG181000 Rh7AG181200 Rh7BG183600 Rh7BG183900 Rh7BG184100 Rh7CG190400 Rh7CG190600 Rh7CG190700 Rh7DG183600 Rh7DG183800
rosa_wichuraiana	Rw7G015870 Rw7G015880 Rw7G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	137, 2310
Acc16I	TGCGCA	1 cut(s)	228
Acc36I	ACCTGC	3 cut(s)	137, 986, 2310
AccB1I	GGYRCC	1 cut(s)	344
AccB7I	CCANNNNNTGG	2 cut(s)	359, 2378
AccBSI	CCGCTC	1 cut(s)	316
AccI	GTMKAC	1 cut(s)	1492
AccII	CGCG	2 cut(s)	1521, 2062
AciI	CCGC	5 cut(s)	316, 513, 1500, 2168, 2230
AcoI	YGGCCR	1 cut(s)	1697
AcsI	RAATTY	2 cut(s)	1734, 1840
AcuI	CTGAAG	3 cut(s)	222, 864, 1929
AcvI	CACGTG	1 cut(s)	1256
AfaI	GTAC	4 cut(s)	490, 677, 1556, 2059
AfiI	CCNNNNNNNGG	6 cut(s)	68, 98, 199, 359, 2112, 2378
AflII	CTTAAG	1 cut(s)	740
AjnI	CCWGG	6 cut(s)	91, 385, 484, 1047, 1455, 2105
AjuI	GAANNNNNNNTTGG	8 cut(s)	346, 378, 1426, 1458, 1726, 1758, 2146, 2178
Alw21I	GWGCWC	1 cut(s)	59
Alw26I	GTCTC	1 cut(s)	2219
AlwNI	CAGNNNCTG	2 cut(s)	152, 467
AoxI	GGCC	4 cut(s)	639, 927, 1697, 2296
ApeKI	GCWGC	7 cut(s)	1159, 1199, 1523, 1747, 1892, 2227, 2358
ApoI	RAATTY	2 cut(s)	1734, 1840
Asp700I	GAANNNNTTC	1 cut(s)	1707
AspLEI	GCGC	4 cut(s)	229, 1056, 1523, 1965
AspS9I	GGNCC	6 cut(s)	640, 927, 1135, 1193, 1581, 2296
AsuC2I	CCSGG	2 cut(s)	698, 1316
AsuHPI	GGTGA	4 cut(s)	51, 743, 1889, 2353
AvaII	GGWCC	3 cut(s)	1135, 1193, 1581
BaeGI	GKGCMC	1 cut(s)	347
BamHI	GGATCC	2 cut(s)	34, 1311
BanI	GGYRCC	1 cut(s)	344
BanII	GRGCYC	1 cut(s)	59
BbrPI	CACGTG	1 cut(s)	1256
BbsI	GAAGAC	2 cut(s)	1434, 2196
Bbv12I	GWGCWC	1 cut(s)	59
BbvI	GCAGC	7 cut(s)	1171, 1211, 1510, 1759, 1879, 2239, 2345
BccI	CCATC	4 cut(s)	545, 821, 972, 2417
BceAI	ACGGC	1 cut(s)	846
BciT130I	CCWGG	6 cut(s)	93, 387, 486, 1049, 1457, 2107
BclI	TGATCA	2 cut(s)	174, 469
BcnI	CCSGG	2 cut(s)	698, 1316
BcoDI	GTCTC	1 cut(s)	2219
BfaI	CTAG	1 cut(s)	728
BfmI	CTRYAG	1 cut(s)	153
BfoI	RGCGCY	2 cut(s)	1057, 1966
BfrI	CTTAAG	1 cut(s)	740
BfuAI	ACCTGC	3 cut(s)	137, 986, 2310
BglII	AGATCT	2 cut(s)	1336, 2237
BisI	GCNGC	7 cut(s)	1160, 1200, 1524, 1748, 1893, 2228, 2359
BlsI	GCNGC	7 cut(s)	1161, 1201, 1525, 1749, 1894, 2229, 2360
BmcAI	AGTACT	1 cut(s)	1556
Bme1390I	CCNGG	8 cut(s)	93, 387, 486, 698, 1049, 1316, 1457, 2107
Bme18I	GGWCC	3 cut(s)	1135, 1193, 1581
BmgT120I	GGNCC	6 cut(s)	640, 927, 1135, 1193, 1581, 2296
BmiI	GGNNCC	7 cut(s)	36, 280, 346, 364, 483, 1194, 1313
BmrFI	CCNGG	8 cut(s)	93, 387, 486, 698, 1049, 1316, 1457, 2107
BmrI	ACTGGG	1 cut(s)	302
BmuI	ACTGGG	1 cut(s)	302
BpiI	GAAGAC	2 cut(s)	1434, 2196
BpmI	CTGGAG	3 cut(s)	408, 1050, 2278
BpuEI	CTTGAG	4 cut(s)	31, 1283, 1923, 2107
BpuMI	CCSGG	2 cut(s)	698, 1316
Bsa29I	ATCGAT	1 cut(s)	407
BsaAI	YACGTR	1 cut(s)	1256
BsaBI	GATNNNNATC	2 cut(s)	468, 1113
BsaJI	CCNNGG	9 cut(s)	92, 358, 1048, 1154, 1163, 1561, 1852, 2049, 2106
BsaWI	WCCGGW	2 cut(s)	220, 2314
BsaXI	ACNNNNNCTCC	2 cut(s)	1220, 1250
Bsc4I	CCNNNNNNNGG	6 cut(s)	68, 98, 199, 359, 2112, 2378
Bse118I	RCCGGY	1 cut(s)	1959
Bse1I	ACTGG	4 cut(s)	103, 308, 1552, 2261
Bse3DI	GCAATG	2 cut(s)	1017, 2085
Bse8I	GATNNNNATC	2 cut(s)	468, 1113
BseBI	CCWGG	6 cut(s)	93, 387, 486, 1049, 1457, 2107
BseCI	ATCGAT	1 cut(s)	407
BseDI	CCNNGG	9 cut(s)	92, 358, 1048, 1154, 1163, 1561, 1852, 2049, 2106
BseGI	GGATG	8 cut(s)	793, 832, 1072, 1114, 1266, 1363, 1381, 2409
BseJI	GATNNNNATC	2 cut(s)	468, 1113
BseLI	CCNNNNNNNGG	6 cut(s)	68, 98, 199, 359, 2112, 2378
BseMI	GCAATG	2 cut(s)	1017, 2085
BseMII	CTCAG	1 cut(s)	1340
BseNI	ACTGG	4 cut(s)	103, 308, 1552, 2261
BseSI	GKGCMC	1 cut(s)	347
BseXI	GCAGC	7 cut(s)	1171, 1211, 1510, 1759, 1879, 2239, 2345
BseYI	CCCAGC	2 cut(s)	282, 924
BsgI	GTGCAG	2 cut(s)	2246, 2344
Bsh1236I	CGCG	2 cut(s)	1521, 2062
BshFI	GGCC	4 cut(s)	641, 929, 1699, 2298
BshNI	GGYRCC	1 cut(s)	344
BshVI	ATCGAT	1 cut(s)	407
BsiHKAI	GWGCWC	1 cut(s)	59
BsiSI	CCGG	6 cut(s)	221, 697, 1316, 1700, 1960, 2315
BslFI	GGGAC	1 cut(s)	109
BslI	CCNNNNNNNGG	6 cut(s)	68, 98, 199, 359, 2112, 2378
BsmAI	GTCTC	1 cut(s)	2219
BsmFI	GGGAC	1 cut(s)	109
BsmI	GAATGC	1 cut(s)	874
BsnI	GGCC	4 cut(s)	641, 929, 1699, 2298
Bsp1286I	GDGCHC	2 cut(s)	59, 347
Bsp19I	CCATGG	2 cut(s)	1163, 2049
BspACI	CCGC	5 cut(s)	316, 513, 1500, 2168, 2230
BspANI	GGCC	4 cut(s)	641, 929, 1699, 2298
BspCNI	CTCAG	1 cut(s)	1341
BspDI	ATCGAT	1 cut(s)	407
BspFNI	CGCG	2 cut(s)	1521, 2062
BspLI	GGNNCC	7 cut(s)	36, 280, 346, 364, 483, 1194, 1313
BspMI	ACCTGC	3 cut(s)	137, 986, 2310
BspT107I	GGYRCC	1 cut(s)	344
BspTI	CTTAAG	1 cut(s)	740
BsrBI	CCGCTC	1 cut(s)	316
BsrDI	GCAATG	2 cut(s)	1017, 2085
BsrFI	RCCGGY	1 cut(s)	1959
BsrI	ACTGG	4 cut(s)	103, 308, 1552, 2261
BssAI	RCCGGY	1 cut(s)	1959
BssECI	CCNNGG	9 cut(s)	92, 358, 1048, 1154, 1163, 1561, 1852, 2049, 2106
BssNAI	GTATAC	1 cut(s)	1493
BssT1I	CCWWGG	6 cut(s)	358, 1154, 1163, 1561, 1852, 2049
Bst1107I	GTATAC	1 cut(s)	1493
Bst2UI	CCWGG	6 cut(s)	93, 387, 486, 1049, 1457, 2107
Bst4CI	ACNGT	6 cut(s)	31, 136, 976, 1099, 1139, 1181
Bst6I	CTCTTC	1 cut(s)	1731
BstAFI	CTTAAG	1 cut(s)	740
BstAPI	GCANNNNNTGC	2 cut(s)	1174, 1934
BstBAI	YACGTR	1 cut(s)	1256
BstC8I	GCNNGC	2 cut(s)	2249, 2356
BstDEI	CTNAG	1 cut(s)	1349
BstDSI	CCRYGG	2 cut(s)	1163, 2049
BstENI	CCTNNNNNAGG	1 cut(s)	2110
BstF5I	GGATG	8 cut(s)	793, 832, 1072, 1114, 1266, 1363, 1381, 2409
BstFNI	CGCG	2 cut(s)	1521, 2062
BstH2I	RGCGCY	2 cut(s)	1057, 1966
BstHHI	GCGC	4 cut(s)	229, 1056, 1523, 1965
BstMAI	GTCTC	1 cut(s)	2219
BstMWI	GCNNNNNNNGC	8 cut(s)	233, 382, 1053, 1165, 1174, 1520, 1934, 2084
BstNI	CCWGG	6 cut(s)	93, 387, 486, 1049, 1457, 2107
BstSCI	CCNGG	8 cut(s)	91, 385, 484, 696, 1047, 1314, 1455, 2105
BstSFI	CTRYAG	1 cut(s)	153
BstSLI	GKGCMC	1 cut(s)	347
BstUI	CGCG	2 cut(s)	1521, 2062
BstV1I	GCAGC	7 cut(s)	1171, 1211, 1510, 1759, 1879, 2239, 2345
BstV2I	GAAGAC	2 cut(s)	1434, 2196
BstX2I	RGATCY	6 cut(s)	34, 463, 1311, 1336, 2024, 2237
BstYI	RGATCY	6 cut(s)	34, 463, 1311, 1336, 2024, 2237
BstZ17I	GTATAC	1 cut(s)	1493
Bsu15I	ATCGAT	1 cut(s)	407
BsuRI	GGCC	4 cut(s)	641, 929, 1699, 2298
BsuTUI	ATCGAT	1 cut(s)	407
BtgI	CCRYGG	2 cut(s)	1163, 2049
BtsCI	GGATG	8 cut(s)	793, 832, 1072, 1114, 1266, 1363, 1381, 2409
BtsI	GCAGTG	1 cut(s)	1932
BtsIMutI	CAGTG	3 cut(s)	36, 981, 1932
BveI	ACCTGC	3 cut(s)	137, 986, 2310
Cac8I	GCNNGC	2 cut(s)	2249, 2356
CaiI	CAGNNNCTG	2 cut(s)	152, 467
CfoI	GCGC	4 cut(s)	229, 1056, 1523, 1965
Cfr10I	RCCGGY	1 cut(s)	1959
Cfr13I	GGNCC	6 cut(s)	640, 927, 1135, 1193, 1581, 2296
ClaI	ATCGAT	1 cut(s)	407
CpoI	CGGWCCG	1 cut(s)	1135
CsiI	ACCWGGT	1 cut(s)	1455
Csp6I	GTAC	4 cut(s)	489, 676, 1555, 2058
CspCI	CAANNNNNGTGG	2 cut(s)	12, 47
CspI	CGGWCCG	1 cut(s)	1135
CviQI	GTAC	4 cut(s)	489, 676, 1555, 2058
DdeI	CTNAG	1 cut(s)	1349
EaeI	YGGCCR	1 cut(s)	1697
Eam1104I	CTCTTC	1 cut(s)	1731
EarI	CTCTTC	1 cut(s)	1731
EciI	GGCGGA	1 cut(s)	2183
Ecl136II	GAGCTC	1 cut(s)	57
Eco130I	CCWWGG	6 cut(s)	358, 1154, 1163, 1561, 1852, 2049
Eco24I	GRGCYC	1 cut(s)	59
Eco32I	GATATC	1 cut(s)	1210
Eco47I	GGWCC	3 cut(s)	1135, 1193, 1581
Eco53kI	GAGCTC	1 cut(s)	57
Eco57I	CTGAAG	3 cut(s)	222, 864, 1929
Eco72I	CACGTG	1 cut(s)	1256
EcoICRI	GAGCTC	1 cut(s)	57
EcoNI	CCTNNNNNAGG	1 cut(s)	2110
EcoRI	GAATTC	1 cut(s)	1734
EcoRII	CCWGG	6 cut(s)	91, 385, 484, 1047, 1455, 2105
EcoRV	GATATC	1 cut(s)	1210
EcoT14I	CCWWGG	6 cut(s)	358, 1154, 1163, 1561, 1852, 2049
EcoT22I	ATGCAT	1 cut(s)	1294
EcoT38I	GRGCYC	1 cut(s)	59
ErhI	CCWWGG	6 cut(s)	358, 1154, 1163, 1561, 1852, 2049
FalI	AAGNNNNNCTT	2 cut(s)	879, 911
FaqI	GGGAC	1 cut(s)	109
FauI	CCCGC	2 cut(s)	309, 2223
FauNDI	CATATG	1 cut(s)	1504
FbaI	TGATCA	2 cut(s)	174, 469
FblI	GTMKAC	1 cut(s)	1492
Fnu4HI	GCNGC	7 cut(s)	1160, 1200, 1524, 1748, 1893, 2228, 2359
FokI	GGATG	8 cut(s)	800, 839, 1059, 1121, 1273, 1370, 1388, 2396
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	7 cut(s)	1160, 1200, 1524, 1748, 1893, 2228, 2359
FspBI	CTAG	1 cut(s)	728
FspI	TGCGCA	1 cut(s)	228
GlaI	GCGC	4 cut(s)	228, 1055, 1522, 1964
GluI	GCNGC	7 cut(s)	1160, 1200, 1524, 1748, 1893, 2228, 2359
GsaI	CCCAGC	2 cut(s)	286, 928
GsuI	CTGGAG	3 cut(s)	408, 1050, 2278
HaeII	RGCGCY	2 cut(s)	1057, 1966
HaeIII	GGCC	4 cut(s)	641, 929, 1699, 2298
HapII	CCGG	6 cut(s)	221, 697, 1316, 1700, 1960, 2315
HhaI	GCGC	4 cut(s)	229, 1056, 1523, 1965
Hin6I	GCGC	4 cut(s)	227, 1054, 1521, 1963
HinP1I	GCGC	4 cut(s)	227, 1054, 1521, 1963
HindIII	AAGCTT	3 cut(s)	572, 1242, 1368
HinfI	GANTC	4 cut(s)	409, 1400, 2192, 2212
HpaII	CCGG	6 cut(s)	221, 697, 1316, 1700, 1960, 2315
HphI	GGTGA	4 cut(s)	51, 743, 1889, 2353
Hpy166II	GTNNAC	7 cut(s)	676, 1102, 1493, 1826, 1915, 2002, 2129
Hpy188I	TCNGA	7 cut(s)	241, 463, 947, 969, 1135, 1953, 2432
Hpy8I	GTNNAC	7 cut(s)	676, 1102, 1493, 1826, 1915, 2002, 2129
Hpy99I	CGWCG	1 cut(s)	648
HpyAV	CCTTC	5 cut(s)	569, 752, 1697, 2048, 2287
HpyCH4III	ACNGT	6 cut(s)	31, 136, 976, 1099, 1139, 1181
HpyCH4IV	ACGT	1 cut(s)	1255
HpyF10VI	GCNNNNNNNGC	8 cut(s)	233, 382, 1053, 1165, 1174, 1520, 1934, 2084
HpyF3I	CTNAG	1 cut(s)	1349
HpySE526I	ACGT	1 cut(s)	1255
HspAI	GCGC	4 cut(s)	227, 1054, 1521, 1963
Ksp22I	TGATCA	2 cut(s)	174, 469
LmnI	GCTCC	6 cut(s)	202, 389, 699, 804, 1228, 2170
Lsp1109I	GCAGC	7 cut(s)	1171, 1211, 1510, 1759, 1879, 2239, 2345
MabI	ACCWGGT	1 cut(s)	1455
MaeI	CTAG	1 cut(s)	728
MaeII	ACGT	1 cut(s)	1255
MaeIII	GTNAC	6 cut(s)	41, 101, 130, 520, 750, 1118
MbiI	CCGCTC	1 cut(s)	316
MboII	GAAGA	9 cut(s)	728, 870, 1331, 1439, 1480, 1718, 1892, 1966, 2201
MfeI	CAATTG	1 cut(s)	1395
MflI	RGATCY	6 cut(s)	34, 463, 1311, 1336, 2024, 2237
MhlI	GDGCHC	2 cut(s)	59, 347
MlyI	GAGTC	2 cut(s)	2186, 2221
MmeI	TCCRAC	2 cut(s)	818, 925
Mph1103I	ATGCAT	1 cut(s)	1294
MroXI	GAANNNNTTC	1 cut(s)	1707
MseI	TTAA	4 cut(s)	741, 870, 1238, 1653
MslI	CAYNNNNRTG	3 cut(s)	213, 1107, 1287
MspA1I	CMGCKG	2 cut(s)	911, 2230
MspCI	CTTAAG	1 cut(s)	740
MspI	CCGG	6 cut(s)	221, 697, 1316, 1700, 1960, 2315
MspR9I	CCNGG	8 cut(s)	93, 387, 486, 698, 1049, 1316, 1457, 2107
MunI	CAATTG	1 cut(s)	1395
Mva1269I	GAATGC	1 cut(s)	874
MvaI	CCWGG	6 cut(s)	93, 387, 486, 1049, 1457, 2107
MvnI	CGCG	2 cut(s)	1521, 2062
MwoI	GCNNNNNNNGC	8 cut(s)	233, 382, 1053, 1165, 1174, 1520, 1934, 2084
NciI	CCSGG	2 cut(s)	698, 1316
NcoI	CCATGG	2 cut(s)	1163, 2049
NdeI	CATATG	1 cut(s)	1504
NlaIV	GGNNCC	7 cut(s)	36, 280, 346, 364, 483, 1194, 1313
NmuCI	GTSAC	3 cut(s)	41, 130, 750
NsbI	TGCGCA	1 cut(s)	228
NsiI	ATGCAT	1 cut(s)	1294
PaqCI	CACCTGC	2 cut(s)	137, 2310
PctI	GAATGC	1 cut(s)	874
PdmI	GAANNNNTTC	1 cut(s)	1707
PfeI	GAWTC	2 cut(s)	409, 1400
PflMI	CCANNNNNTGG	2 cut(s)	359, 2378
PfoI	TCCNGGA	2 cut(s)	696, 1314
PkrI	GCNGC	7 cut(s)	1161, 1201, 1525, 1749, 1894, 2229, 2360
PleI	GAGTC	2 cut(s)	2186, 2220
PmaCI	CACGTG	1 cut(s)	1256
PmlI	CACGTG	1 cut(s)	1256
PpsI	GAGTC	2 cut(s)	2186, 2220
Ppu21I	YACGTR	1 cut(s)	1256
Psp124BI	GAGCTC	1 cut(s)	59
Psp6I	CCWGG	6 cut(s)	91, 385, 484, 1047, 1455, 2105
PspCI	CACGTG	1 cut(s)	1256
PspFI	CCCAGC	2 cut(s)	282, 924
PspGI	CCWGG	6 cut(s)	91, 385, 484, 1047, 1455, 2105
PspN4I	GGNNCC	7 cut(s)	36, 280, 346, 364, 483, 1194, 1313
PspPI	GGNCC	6 cut(s)	640, 927, 1135, 1193, 1581, 2296
PstNI	CAGNNNCTG	2 cut(s)	152, 467
PsuI	RGATCY	6 cut(s)	34, 463, 1311, 1336, 2024, 2237
PvuII	CAGCTG	1 cut(s)	911
RsaI	GTAC	4 cut(s)	490, 677, 1556, 2059
RsaNI	GTAC	4 cut(s)	489, 676, 1555, 2058
RseI	CAYNNNNRTG	3 cut(s)	213, 1107, 1287
Rsr2I	CGGWCCG	1 cut(s)	1135
RsrII	CGGWCCG	1 cut(s)	1135
SacI	GAGCTC	1 cut(s)	59
SaqAI	TTAA	4 cut(s)	741, 870, 1238, 1653
SatI	GCNGC	7 cut(s)	1160, 1200, 1524, 1748, 1893, 2228, 2359
Sau96I	GGNCC	6 cut(s)	640, 927, 1135, 1193, 1581, 2296
ScaI	AGTACT	1 cut(s)	1556
SchI	GAGTC	2 cut(s)	2186, 2221
ScrFI	CCNGG	8 cut(s)	93, 387, 486, 698, 1049, 1316, 1457, 2107
SduI	GDGCHC	2 cut(s)	59, 347
SexAI	ACCWGGT	1 cut(s)	1455
SfcI	CTRYAG	1 cut(s)	153
SinI	GGWCC	3 cut(s)	1135, 1193, 1581
SmiMI	CAYNNNNRTG	3 cut(s)	213, 1107, 1287
SmlI	CTYRAG	5 cut(s)	46, 740, 1298, 1938, 2122
SmoI	CTYRAG	5 cut(s)	46, 740, 1298, 1938, 2122
SsiI	CCGC	5 cut(s)	316, 513, 1500, 2168, 2230
SspI	AATATT	1 cut(s)	1820
SspMI	CTAG	1 cut(s)	728
SstI	GAGCTC	1 cut(s)	59
StyD4I	CCNGG	8 cut(s)	91, 385, 484, 696, 1047, 1314, 1455, 2105
StyI	CCWWGG	6 cut(s)	358, 1154, 1163, 1561, 1852, 2049
TaaI	ACNGT	6 cut(s)	31, 136, 976, 1099, 1139, 1181
TaiI	ACGT	1 cut(s)	1258
TaqI	TCGA	3 cut(s)	407, 904, 2217
TatI	WGTACW	1 cut(s)	1554
TfiI	GAWTC	2 cut(s)	409, 1400
Tru1I	TTAA	4 cut(s)	741, 870, 1238, 1653
Tru9I	TTAA	4 cut(s)	741, 870, 1238, 1653
TscAI	CASTG	3 cut(s)	36, 981, 1939
TseFI	GTSAC	3 cut(s)	41, 130, 750
TseI	GCWGC	7 cut(s)	1159, 1199, 1523, 1747, 1892, 2227, 2358
Tsp45I	GTSAC	3 cut(s)	41, 130, 750
TspDTI	ATGAA	5 cut(s)	1466, 1525, 1788, 2022, 2306
TspGWI	ACGGA	2 cut(s)	839, 2148
TspRI	CASTG	3 cut(s)	36, 981, 1939
Van91I	CCANNNNNTGG	2 cut(s)	359, 2378
Vha464I	CTTAAG	1 cut(s)	740
VpaK11BI	GGWCC	3 cut(s)	1135, 1193, 1581
XagI	CCTNNNNNAGG	1 cut(s)	2110
XapI	RAATTY	2 cut(s)	1734, 1840
XcmI	CCANNNNNNNNNTGG	3 cut(s)	548, 1161, 1559
XmiI	GTMKAC	1 cut(s)	1492
XmnI	GAANNNNTTC	1 cut(s)	1707
XspI	CTAG	1 cut(s)	728
ZrmI	AGTACT	1 cut(s)	1556
Zsp2I	ATGCAT	1 cut(s)	1294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.