Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001557

Physical Location & Seq

Genomic Coordinates Forward (+)

50864741 .. 50870348

Gene Structure 5608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2328 bp

ATGGCTAATCCTACTTACCAGGAATCCTTGTCATTTGGAGGCCCAGACCATCCTCAGGGTCAAGAAGTTATTCCATTTGAGAGTGGAACCCTGAAGGTTTTGCTACATGGCTCCCTAGTCATATGGGTCAAGAAGGCCGAAAACCTTCCTGACATGGAGAGTTTTCGCAAGCATGTGGGGCATGCAATTGCGAAGTTGCCTAGGACGAGACGCAAAAATATTATCAGTTCTCCATATGTTACGATTTCTTTATCAAATGCTGTGATTGGGAGGACCTTTGTGATGAGCAGTACCGAGAACCCTGTGTGGGAGCAACATTTTGATGTTCCTGTTGCTCATTATGCTTCACGAGTGAACTTTGTTGTGAAACACAGTGATGTTTTCGGCTCTAAGACCATAGGTTTTGTTGGAATCTCAGCTCAACAGTTGTGCTCTGGCATCAAAGTTGAGGGAACCTTCCCTATCCTTGACACTACCAGTGGTAAAAGCTGTATGCCTGGAGCTGTGTTGAGCTTGTCAATTCAGTATACCGCGATTGAAAAAATAACATTTTATAATCGCGGAGTAGGTTTAGATCCTGATCATCAAGGGGTCCCTGGTACTTACTTTCCTGTTAGGAAAGGCGGTAAAGTTACTCTTTATCAAGATGCTCATGTTCCTGATGGTTGCCTCCCCAGCTTCAAGCTTGACGGCGGTCTTAAGTACGAGCATGGGAATTGTTGGCAAGACATATTTGATGCAATAAGTCAGGCCCGCCGTTTGATATACATAGCTGGGTGGTCACTGCACCCCAAAGTCAGATTGCTTCGGAATAATGGTTCATCAGATCGCACATTAGGTGATCTGCTGAAGACCAAGTCACAGGAAGGGTCTGTCTTAAGGTCCAACAGTATTGATTACTACTTGAAGCTGTGGGAAAGCTGTCCTGAATCTAGGAAGGGCTCATGCATACCAATGACGAAGACGCACGACGTTTCTTTAAGGACTCTTCAGTTCAATTTCTACTCTGCCCTCGATCATCAGTCCAAAGCTGGGGGAAAAAGATGGTTGGATAGCATGTCCTTGCTTCAGTTGCTTGAAGCTGGAATAGTCTATACCCATCATCAGAAAACTGTAATTGTGGACGCTGATGTTGGACATTTTAAAAGAAAGATCATTGCATTTGTTGGAGGTCTTGACTTGTGCTTGGGACGTTATGATACTCCGGAGCATTCTATATTTAGGACCTTACGTTCAGTGCACAAGGATGACAATCGTAACCCTACTTTCTCGGTAAACATTGTATTAATTTTCTACAGTGCTGAAGCTGTTCTTGATCTGAGAAGTAAACCCGTTATTGGGTGTCCAAGGCAGCCATGGCATGATTTGCACAGTAAAATTGATGGTCCAGCTGCTTATGACATCCTCACCAATTTGGAGCAGCGTTGGGGGATGGCTTCAAAACCACATGGTCTTCACAAACTAAAAGAACGAGGACTTCAAAAACTGAAATTACGAGGAGATGATGATGATGCATTACTCAAGATTGAGAAAATTCCTGAAATTCTTGGGATGACAGAGGTTTTCCGTTCAATTGATTCCCATTCAGTGCAAGGATTTCCCGAAGACACTGGAGAAGCTACAAGGATGAACCTTGTTTGTGGGAAAAATGTGCTGATAGACATGAGTGCAAACAATTTGATACCGATGGAAATCGCTCTGAAAATAGCAAACAAAATCAAAGCAAATGAGAAGTTTTCTGTATATATTGTCATCCCCATGTGGCCAGAAGGTGATCCCAATACTATGCCTCTTCAAAGAATTCTCCTTTGGCAGCATAAAACAATGCAAATGATGTATGAAATCATTTACAAGGCTCTAAAGGAGGTTGGACTCGAAAATAAGTACTTTCCACAAGACTATTTGAATTTCTTTTGCCTCGGAAATCGTGAGAAACCAAGTGGAGATGCTGCAAATAATTCAAGTGCAGCAAACACTCCTGAAATATATGGATACAGAATGTCACTGTGGGCAGAGCATTTAGGACTTGTTGAAGAATGTTTCAATCAGCCAGAGAGTCTTGAATGTGTTCAAAGGGTAAGGTCTTTGGGTGAGCAGAACTGGAGTCAATACGTGGCCGACGAGGTTACAGAAATGAAAGGTCACCTCCTCAAGTATCCGGTTGAAGTTGGTCCAACGGGCACGGTGGGGCCTCTTCCGGGGTGTCCAACATTTCCAGACGTTGGTGGCAAAATATTGGGGAGTCTCGGCGACATAAAAATTTTGAGTATCAGTAGCAGTAGCAGGGGGAGGTCAATATCACTTAGAGGCGCCATCATCACCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006629 GO:0006643 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008289 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009816 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0022626 GO:0030054 GO:0032501 GO:0032502 GO:0032991 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0071704 GO:0071944 GO:0098542 GO:1901981 GO:1902936 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

775

Amino Acids

86.4

Weight (kDa)

8.47

Isoelectric Point (pI)

44.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	37 - 154	4.4e-13	C2 domain
PLD_C	PF12357	678 - 748	4e-30	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11830 AT4G11830 AT4G11830 AT4G11830 AT4G11840 AT4G11840 AT4G11850
fragaria_vesca	FvH4_5g01274 FvH4_5g01290 FvH4_5g01290 FvH4_5g01290
malus_domestica	MD04G1069600.v1.1
prunus_persica	Prupe.5G088300_v2.0.a1 Prupe.5G088300_v2.0.a1
pyrus_communis	pycom04g06330
rosa_chinensis	RchiOBHm_Chr4g0413221 RchiOBHm_Chr7g0199651 RchiOBHm_Chr7g0199691 RchiOBHm_Chr7g0199711 RchiOBHm_Chr7g0199731
rosa_laevigata	RLG00000003775 RLG00000003776 RLG00000003777 RLG00000003778 RLG00000003779
rosa_multiflora	Rmu_co8400099.1_g000001 Rmu_sc0002748.1_g000025 Rmu_sc0002748.1_g000027 Rmu_sc0002748.1_g000028 Rmu_sc0009191.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256480 Rroxscaffold_3G00256490 Rroxscaffold_3G00256520
rosa_rugosa	Rorug07G0055600 Rorug07G0055800 Rorug07G0055900
rosa_samantha	Rh7AG180700 Rh7AG181000 Rh7AG181200 Rh7BG183600 Rh7BG183900 Rh7BG184100 Rh7CG190400 Rh7CG190600 Rh7CG190700 Rh7DG183600 Rh7DG183800
rosa_wichuraiana	Rw7G015870 Rw7G015880 Rw7G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	555
AccB1I	GGYRCC	1 cut(s)	2309
AccB7I	CCANNNNNTGG	1 cut(s)	2222
AccI	GTMKAC	1 cut(s)	527
AccII	CGCG	2 cut(s)	533, 561
AccIII	TCCGGA	1 cut(s)	1204
AciI	CCGC	5 cut(s)	531, 561, 624, 693, 754
AclWI	GGATC	2 cut(s)	569, 1769
AcoI	YGGCCR	2 cut(s)	1763, 2115
AcsI	RAATTY	5 cut(s)	1533, 1542, 1800, 1906, 2259
AcuI	CTGAAG	5 cut(s)	113, 869, 974, 1052, 1323
AcyI	GRCGYC	1 cut(s)	2310
AfaI	GTAC	4 cut(s)	292, 601, 704, 1886
AfiI	CCNNNNNNNGG	7 cut(s)	55, 307, 1032, 1337, 1338, 2198, 2222
AflII	CTTAAG	2 cut(s)	698, 877
AjnI	CCWGG	3 cut(s)	18, 496, 595
AjuI	GAANNNNNNNTTGG	2 cut(s)	1792, 1824
AloI	GAACNNNNNNTCC	4 cut(s)	802, 834, 1216, 1248
Alw21I	GWGCWC	2 cut(s)	434, 1242
Alw26I	GTCTC	2 cut(s)	202, 2249
Alw44I	GTGCAC	1 cut(s)	1238
AlwI	GGATC	2 cut(s)	569, 1769
Aor13HI	TCCGGA	1 cut(s)	1204
AoxI	GGCC	6 cut(s)	40, 135, 750, 1763, 2115, 2189
ApaLI	GTGCAC	1 cut(s)	1238
ApeKI	GCWGC	6 cut(s)	1351, 1391, 1420, 1813, 1949, 1967
ApoI	RAATTY	5 cut(s)	1533, 1542, 1800, 1906, 2259
AseI	ATTAAT	1 cut(s)	1286
Asp700I	GAANNNNTTC	4 cut(s)	69, 144, 1308, 2067
AspA2I	CCTAGG	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	2312
AspS9I	GGNCC	9 cut(s)	41, 273, 592, 751, 882, 1224, 1385, 2171, 2189
AsuC2I	CCSGG	1 cut(s)	2199
AsuHPI	GGTGA	6 cut(s)	851, 1399, 1784, 2102, 2135, 2311
AvaII	GGWCC	6 cut(s)	273, 592, 882, 1224, 1385, 2171
AvrII	CCTAGG	1 cut(s)	200
AxyI	CCTNAGG	1 cut(s)	54
BaeGI	GKGCMC	2 cut(s)	1242, 2183
BalI	TGGCCA	1 cut(s)	1765
BanI	GGYRCC	1 cut(s)	2309
BanII	GRGCYC	1 cut(s)	944
BauI	CACGAG	1 cut(s)	348
BbsI	GAAGAC	4 cut(s)	857, 968, 1445, 1611
Bbv12I	GWGCWC	2 cut(s)	434, 1242
BbvI	GCAGC	6 cut(s)	1363, 1378, 1432, 1825, 1936, 1979
BccI	CCATC	8 cut(s)	57, 656, 1038, 1107, 1376, 1426, 1681, 2321
BceAI	ACGGC	2 cut(s)	706, 741
BciT130I	CCWGG	3 cut(s)	20, 498, 597
BciVI	GTATCC	2 cut(s)	1985, 2166
BclI	TGATCA	1 cut(s)	580
BcnI	CCSGG	1 cut(s)	2199
BcoDI	GTCTC	2 cut(s)	202, 2249
BfaI	CTAG	3 cut(s)	116, 201, 933
BfmI	CTRYAG	1 cut(s)	1294
BfoI	RGCGCY	1 cut(s)	2313
BfrI	CTTAAG	2 cut(s)	698, 877
BfuI	GTATCC	2 cut(s)	1985, 2166
BisI	GCNGC	6 cut(s)	1352, 1392, 1421, 1814, 1950, 1968
BlnI	CCTAGG	1 cut(s)	200
BlsI	GCNGC	6 cut(s)	1353, 1393, 1422, 1815, 1951, 1969
BmcAI	AGTACT	1 cut(s)	1886
Bme1390I	CCNGG	4 cut(s)	20, 498, 597, 2199
Bme18I	GGWCC	6 cut(s)	273, 592, 882, 1224, 1385, 2171
BmgT120I	GGNCC	9 cut(s)	41, 273, 592, 751, 882, 1224, 1385, 2171, 2189
BmiI	GGNNCC	7 cut(s)	88, 112, 454, 593, 594, 2190, 2311
BmrFI	CCNGG	4 cut(s)	20, 498, 597, 2199
BmsI	GCATC	5 cut(s)	447, 637, 727, 1501, 1936
BoxI	GACNNNNGTC	1 cut(s)	693
BpiI	GAAGAC	4 cut(s)	857, 968, 1445, 1611
BpmI	CTGGAG	3 cut(s)	519, 1632, 2122
BpuEI	CTTGAG	2 cut(s)	1505, 2135
BpuMI	CCSGG	1 cut(s)	2199
BsaAI	YACGTR	1 cut(s)	2113
BsaBI	GATNNNNATC	3 cut(s)	579, 1251, 1691
BsaHI	GRCGYC	1 cut(s)	2310
BsaJI	CCNNGG	6 cut(s)	200, 595, 1346, 1355, 1918, 2198
BsaWI	WCCGGW	2 cut(s)	1204, 2158
Bsc4I	CCNNNNNNNGG	7 cut(s)	55, 307, 1032, 1337, 1338, 2198, 2222
Bse1I	ACTGG	3 cut(s)	477, 1615, 2105
Bse21I	CCTNAGG	1 cut(s)	54
Bse3DI	GCAATG	1 cut(s)	1155
Bse8I	GATNNNNATC	3 cut(s)	579, 1251, 1691
BseAI	TCCGGA	1 cut(s)	1204
BseBI	CCWGG	3 cut(s)	20, 498, 597
BseDI	CCNNGG	6 cut(s)	200, 595, 1346, 1355, 1918, 2198
BseGI	GGATG	7 cut(s)	49, 1252, 1401, 1437, 1557, 1632, 1752
BseJI	GATNNNNATC	3 cut(s)	579, 1251, 1691
BseLI	CCNNNNNNNGG	7 cut(s)	55, 307, 1032, 1337, 1338, 2198, 2222
BseMI	GCAATG	1 cut(s)	1155
BseMII	CTCAG	3 cut(s)	68, 429, 1310
BseNI	ACTGG	3 cut(s)	477, 1615, 2105
BseRI	GAGGAG	2 cut(s)	1512, 2138
BseSI	GKGCMC	2 cut(s)	1242, 2183
BseXI	GCAGC	6 cut(s)	1363, 1378, 1432, 1825, 1936, 1979
BseYI	CCCAGC	3 cut(s)	674, 773, 1031
BsgI	GTGCAG	2 cut(s)	770, 1986
Bsh1236I	CGCG	2 cut(s)	533, 561
BshFI	GGCC	6 cut(s)	42, 137, 752, 1765, 2117, 2191
BshNI	GGYRCC	1 cut(s)	2309
BsiHKAI	GWGCWC	2 cut(s)	434, 1242
BsiSI	CCGG	3 cut(s)	1205, 2159, 2198
BslFI	GGGAC	2 cut(s)	578, 1203
BslI	CCNNNNNNNGG	7 cut(s)	55, 307, 1032, 1337, 1338, 2198, 2222
BsmAI	GTCTC	2 cut(s)	202, 2249
BsmBI	CGTCTC	1 cut(s)	202
BsmFI	GGGAC	2 cut(s)	578, 1203
BsmI	GAATGC	1 cut(s)	1210
BsnI	GGCC	6 cut(s)	42, 137, 752, 1765, 2117, 2191
Bsp1286I	GDGCHC	4 cut(s)	434, 944, 1242, 2183
Bsp13I	TCCGGA	1 cut(s)	1204
Bsp143I	GATC	8 cut(s)	574, 580, 826, 841, 1015, 1152, 1315, 1774
Bsp19I	CCATGG	1 cut(s)	1355
BspACI	CCGC	5 cut(s)	531, 561, 624, 693, 754
BspANI	GGCC	6 cut(s)	42, 137, 752, 1765, 2117, 2191
BspCNI	CTCAG	3 cut(s)	67, 428, 1311
BspEI	TCCGGA	1 cut(s)	1204
BspFNI	CGCG	2 cut(s)	533, 561
BspLI	GGNNCC	7 cut(s)	88, 112, 454, 593, 594, 2190, 2311
BspPI	GGATC	2 cut(s)	569, 1769
BspT107I	GGYRCC	1 cut(s)	2309
BspTI	CTTAAG	2 cut(s)	698, 877
BsrDI	GCAATG	1 cut(s)	1155
BsrI	ACTGG	3 cut(s)	477, 1615, 2105
BssECI	CCNNGG	6 cut(s)	200, 595, 1346, 1355, 1918, 2198
BssMI	GATC	8 cut(s)	574, 580, 826, 841, 1015, 1152, 1315, 1774
BssNAI	GTATAC	1 cut(s)	528
BssNI	GRCGYC	1 cut(s)	2310
BssSI	CACGAG	1 cut(s)	348
BssT1I	CCWWGG	3 cut(s)	200, 1346, 1355
Bst1107I	GTATAC	1 cut(s)	528
Bst2BI	CACGAG	1 cut(s)	348
Bst2UI	CCWGG	3 cut(s)	20, 498, 597
Bst4CI	ACNGT	8 cut(s)	374, 426, 890, 1114, 1298, 1373, 2007, 2185
Bst6I	CTCTTC	3 cut(s)	993, 1797, 2199
BstACI	GRCGYC	1 cut(s)	2310
BstAFI	CTTAAG	2 cut(s)	698, 877
BstAPI	GCANNNNNTGC	1 cut(s)	1366
BstBAI	YACGTR	1 cut(s)	2113
BstC8I	GCNNGC	3 cut(s)	170, 183, 754
BstDEI	CTNAG	5 cut(s)	54, 390, 415, 1319, 2303
BstDSI	CCRYGG	1 cut(s)	1355
BstEII	GGTNACC	1 cut(s)	2141
BstF5I	GGATG	7 cut(s)	49, 1252, 1401, 1437, 1557, 1632, 1752
BstFNI	CGCG	2 cut(s)	533, 561
BstH2I	RGCGCY	1 cut(s)	2313
BstHHI	GCGC	1 cut(s)	2312
BstKTI	GATC	8 cut(s)	577, 583, 829, 844, 1018, 1155, 1318, 1777
BstMAI	GTCTC	2 cut(s)	202, 2249
BstMBI	GATC	8 cut(s)	574, 580, 826, 841, 1015, 1152, 1315, 1774
BstMWI	GCNNNNNNNGC	6 cut(s)	178, 341, 675, 1072, 1357, 1366
BstNI	CCWGG	3 cut(s)	20, 498, 597
BstNSI	RCATGY	3 cut(s)	176, 185, 1060
BstPAI	GACNNNNGTC	1 cut(s)	693
BstPI	GGTNACC	1 cut(s)	2141
BstSCI	CCNGG	4 cut(s)	18, 496, 595, 2197
BstSFI	CTRYAG	1 cut(s)	1294
BstSLI	GKGCMC	2 cut(s)	1242, 2183
BstUI	CGCG	2 cut(s)	533, 561
BstV1I	GCAGC	6 cut(s)	1363, 1378, 1432, 1825, 1936, 1979
BstV2I	GAAGAC	4 cut(s)	857, 968, 1445, 1611
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
BstZ17I	GTATAC	1 cut(s)	528
Bsu36I	CCTNAGG	1 cut(s)	54
BsuI	GTATCC	2 cut(s)	1985, 2166
BsuRI	GGCC	6 cut(s)	42, 137, 752, 1765, 2117, 2191
BtgI	CCRYGG	1 cut(s)	1355
BtsCI	GGATG	7 cut(s)	49, 1252, 1401, 1437, 1557, 1632, 1752
BtsI	GCAGTG	1 cut(s)	782
BtsIMutI	CAGTG	8 cut(s)	379, 484, 782, 1242, 1303, 1593, 1608, 2003
Cac8I	GCNNGC	3 cut(s)	170, 183, 754
CfoI	GCGC	1 cut(s)	2312
Cfr13I	GGNCC	9 cut(s)	41, 273, 592, 751, 882, 1224, 1385, 2171, 2189
CseI	GACGC	3 cut(s)	219, 973, 1133
Csp6I	GTAC	4 cut(s)	291, 600, 703, 1885
CviQI	GTAC	4 cut(s)	291, 600, 703, 1885
DdeI	CTNAG	5 cut(s)	54, 390, 415, 1319, 2303
DinI	GGCGCC	1 cut(s)	2311
DpnI	GATC	8 cut(s)	576, 582, 828, 843, 1017, 1154, 1317, 1776
DpnII	GATC	8 cut(s)	574, 580, 826, 841, 1015, 1152, 1315, 1774
DraI	TTTAAA	1 cut(s)	1144
EaeI	YGGCCR	2 cut(s)	1763, 2115
Eam1104I	CTCTTC	3 cut(s)	993, 1797, 2199
EarI	CTCTTC	3 cut(s)	993, 1797, 2199
Eco130I	CCWWGG	3 cut(s)	200, 1346, 1355
Eco24I	GRGCYC	1 cut(s)	944
Eco47I	GGWCC	6 cut(s)	273, 592, 882, 1224, 1385, 2171
Eco57I	CTGAAG	5 cut(s)	113, 869, 974, 1052, 1323
Eco81I	CCTNAGG	1 cut(s)	54
Eco91I	GGTNACC	1 cut(s)	2141
EcoO109I	RGGNCCY	4 cut(s)	273, 592, 1224, 2189
EcoO65I	GGTNACC	1 cut(s)	2141
EcoRI	GAATTC	1 cut(s)	1800
EcoRII	CCWGG	3 cut(s)	18, 496, 595
EcoT14I	CCWWGG	3 cut(s)	200, 1346, 1355
EcoT22I	ATGCAT	2 cut(s)	950, 1516
EcoT38I	GRGCYC	1 cut(s)	944
EgeI	GGCGCC	1 cut(s)	2311
EheI	GGCGCC	1 cut(s)	2311
ErhI	CCWWGG	3 cut(s)	200, 1346, 1355
Esp3I	CGTCTC	1 cut(s)	202
FalI	AAGNNNNNCTT	4 cut(s)	621, 653, 1296, 1328
FaqI	GGGAC	2 cut(s)	578, 1203
FauI	CCCGC	1 cut(s)	761
FauNDI	CATATG	2 cut(s)	122, 235
FbaI	TGATCA	1 cut(s)	580
FblI	GTMKAC	1 cut(s)	527
Fnu4HI	GCNGC	6 cut(s)	1352, 1392, 1421, 1814, 1950, 1968
FokI	GGATG	7 cut(s)	36, 1259, 1388, 1444, 1564, 1639, 1739
FriOI	GRGCYC	1 cut(s)	944
Fsp4HI	GCNGC	6 cut(s)	1352, 1392, 1421, 1814, 1950, 1968
FspBI	CTAG	3 cut(s)	116, 201, 933
GlaI	GCGC	1 cut(s)	2311
GluI	GCNGC	6 cut(s)	1352, 1392, 1421, 1814, 1950, 1968
GsaI	CCCAGC	3 cut(s)	678, 777, 1035
GsuI	CTGGAG	3 cut(s)	519, 1632, 2122
HaeII	RGCGCY	1 cut(s)	2313
HaeIII	GGCC	6 cut(s)	42, 137, 752, 1765, 2117, 2191
HapII	CCGG	3 cut(s)	1205, 2159, 2198
HgaI	GACGC	3 cut(s)	219, 973, 1133
HhaI	GCGC	1 cut(s)	2312
Hin1I	GRCGYC	1 cut(s)	2310
Hin6I	GCGC	1 cut(s)	2310
HinP1I	GCGC	1 cut(s)	2310
HindIII	AAGCTT	1 cut(s)	683
HinfI	GANTC	9 cut(s)	23, 411, 929, 985, 1577, 1872, 2056, 2104, 2242
HpaII	CCGG	3 cut(s)	1205, 2159, 2198
HphI	GGTGA	6 cut(s)	851, 1399, 1784, 2102, 2135, 2311
Hpy166II	GTNNAC	6 cut(s)	355, 528, 1123, 1240, 1276, 1328
Hpy188I	TCNGA	7 cut(s)	800, 810, 826, 1107, 1320, 1701, 1922
Hpy8I	GTNNAC	6 cut(s)	355, 528, 1123, 1240, 1276, 1328
Hpy99I	CGWCG	2 cut(s)	974, 2123
HpyAV	CCTTC	7 cut(s)	88, 127, 155, 466, 860, 931, 1763
HpyCH4III	ACNGT	8 cut(s)	374, 426, 890, 1114, 1298, 1373, 2007, 2185
HpyCH4IV	ACGT	5 cut(s)	972, 1192, 1231, 2112, 2220
HpyF10VI	GCNNNNNNNGC	6 cut(s)	178, 341, 675, 1072, 1357, 1366
HpyF3I	CTNAG	5 cut(s)	54, 390, 415, 1319, 2303
HpySE526I	ACGT	5 cut(s)	972, 1192, 1231, 2112, 2220
Hsp92I	GRCGYC	1 cut(s)	2310
HspAI	GCGC	1 cut(s)	2310
KasI	GGCGCC	1 cut(s)	2309
KflI	GGGWCCC	1 cut(s)	592
Kpn2I	TCCGGA	1 cut(s)	1204
Ksp22I	TGATCA	1 cut(s)	580
Kzo9I	GATC	8 cut(s)	574, 580, 826, 841, 1015, 1152, 1315, 1774
LmnI	GCTCC	5 cut(s)	116, 310, 500, 1207, 1417
Lsp1109I	GCAGC	6 cut(s)	1363, 1378, 1432, 1825, 1936, 1979
LweI	GCATC	5 cut(s)	447, 637, 727, 1501, 1936
MaeI	CTAG	3 cut(s)	116, 201, 933
MaeII	ACGT	5 cut(s)	972, 1192, 1231, 2112, 2220
MaeIII	GTNAC	8 cut(s)	238, 631, 780, 858, 1256, 2001, 2125, 2141
MalI	GATC	8 cut(s)	576, 582, 828, 843, 1017, 1154, 1317, 1776
MboI	GATC	8 cut(s)	574, 580, 826, 841, 1015, 1152, 1315, 1774
MboII	GAAGA	8 cut(s)	862, 973, 980, 1445, 1616, 1784, 2045, 2186
MfeI	CAATTG	2 cut(s)	186, 1572
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	4 cut(s)	434, 944, 1242, 2183
MlsI	TGGCCA	1 cut(s)	1765
MluNI	TGGCCA	1 cut(s)	1765
Mly113I	GGCGCC	1 cut(s)	2310
MlyI	GAGTC	5 cut(s)	979, 1866, 2065, 2113, 2251
MmeI	TCCRAC	8 cut(s)	388, 909, 1029, 1114, 1147, 1849, 2198, 2231
Mox20I	TGGCCA	1 cut(s)	1765
Mph1103I	ATGCAT	2 cut(s)	950, 1516
MroI	TCCGGA	1 cut(s)	1204
MroXI	GAANNNNTTC	4 cut(s)	69, 144, 1308, 2067
MscI	TGGCCA	1 cut(s)	1765
MseI	TTAA	5 cut(s)	699, 878, 980, 1143, 1286
MslI	CAYNNNNRTG	5 cut(s)	321, 375, 953, 1245, 1757
Msp20I	TGGCCA	1 cut(s)	1765
MspA1I	CMGCKG	1 cut(s)	1391
MspCI	CTTAAG	2 cut(s)	698, 877
MspI	CCGG	3 cut(s)	1205, 2159, 2198
MspR9I	CCNGG	4 cut(s)	20, 498, 597, 2199
MunI	CAATTG	2 cut(s)	186, 1572
Mva1269I	GAATGC	1 cut(s)	1210
MvaI	CCWGG	3 cut(s)	20, 498, 597
MvnI	CGCG	2 cut(s)	533, 561
MwoI	GCNNNNNNNGC	6 cut(s)	178, 341, 675, 1072, 1357, 1366
NarI	GGCGCC	1 cut(s)	2310
NciI	CCSGG	1 cut(s)	2199
NcoI	CCATGG	1 cut(s)	1355
NdeI	CATATG	2 cut(s)	122, 235
NdeII	GATC	8 cut(s)	574, 580, 826, 841, 1015, 1152, 1315, 1774
NlaIV	GGNNCC	7 cut(s)	88, 112, 454, 593, 594, 2190, 2311
NmeAIII	GCCGAG	1 cut(s)	2226
NmuCI	GTSAC	4 cut(s)	780, 858, 2001, 2141
NsiI	ATGCAT	2 cut(s)	950, 1516
NspI	RCATGY	3 cut(s)	176, 185, 1060
PaeI	GCATGC	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	2118
PctI	GAATGC	1 cut(s)	1210
PdmI	GAANNNNTTC	4 cut(s)	69, 144, 1308, 2067
PfeI	GAWTC	4 cut(s)	23, 411, 929, 1577
PflFI	GACNNNGTC	1 cut(s)	856
PflMI	CCANNNNNTGG	1 cut(s)	2222
PkrI	GCNGC	6 cut(s)	1353, 1393, 1422, 1815, 1951, 1969
PleI	GAGTC	5 cut(s)	979, 1866, 2064, 2112, 2250
PluTI	GGCGCC	1 cut(s)	2313
PpsI	GAGTC	5 cut(s)	979, 1866, 2064, 2112, 2250
Ppu21I	YACGTR	1 cut(s)	2113
PpuMI	RGGWCCY	3 cut(s)	273, 592, 1224
PshAI	GACNNNNGTC	1 cut(s)	693
PshBI	ATTAAT	1 cut(s)	1286
PsiI	TTATAA	1 cut(s)	555
Psp5II	RGGWCCY	3 cut(s)	273, 592, 1224
Psp6I	CCWGG	3 cut(s)	18, 496, 595
PspEI	GGTNACC	1 cut(s)	2141
PspFI	CCCAGC	3 cut(s)	674, 773, 1031
PspGI	CCWGG	3 cut(s)	18, 496, 595
PspN4I	GGNNCC	7 cut(s)	88, 112, 454, 593, 594, 2190, 2311
PspPI	GGNCC	9 cut(s)	41, 273, 592, 751, 882, 1224, 1385, 2171, 2189
PspPPI	RGGWCCY	3 cut(s)	273, 592, 1224
PsuI	RGATCY	1 cut(s)	574
PsyI	GACNNNGTC	1 cut(s)	856
PvuII	CAGCTG	1 cut(s)	1391
RsaI	GTAC	4 cut(s)	292, 601, 704, 1886
RsaNI	GTAC	4 cut(s)	291, 600, 703, 1885
RseI	CAYNNNNRTG	5 cut(s)	321, 375, 953, 1245, 1757
SaqAI	TTAA	5 cut(s)	699, 878, 980, 1143, 1286
SatI	GCNGC	6 cut(s)	1352, 1392, 1421, 1814, 1950, 1968
Sau3AI	GATC	8 cut(s)	574, 580, 826, 841, 1015, 1152, 1315, 1774
Sau96I	GGNCC	9 cut(s)	41, 273, 592, 751, 882, 1224, 1385, 2171, 2189
ScaI	AGTACT	1 cut(s)	1886
SchI	GAGTC	5 cut(s)	979, 1866, 2065, 2113, 2251
ScrFI	CCNGG	4 cut(s)	20, 498, 597, 2199
SduI	GDGCHC	4 cut(s)	434, 944, 1242, 2183
SfaNI	GCATC	5 cut(s)	447, 637, 727, 1501, 1936
SfcI	CTRYAG	1 cut(s)	1294
SfoI	GGCGCC	1 cut(s)	2311
SinI	GGWCC	6 cut(s)	273, 592, 882, 1224, 1385, 2171
SmiMI	CAYNNNNRTG	5 cut(s)	321, 375, 953, 1245, 1757
SmlI	CTYRAG	4 cut(s)	698, 877, 1520, 2150
SmoI	CTYRAG	4 cut(s)	698, 877, 1520, 2150
SphI	GCATGC	1 cut(s)	185
SsiI	CCGC	5 cut(s)	531, 561, 624, 693, 754
SspDI	GGCGCC	1 cut(s)	2309
SspI	AATATT	2 cut(s)	220, 2235
SspMI	CTAG	3 cut(s)	116, 201, 933
StyD4I	CCNGG	4 cut(s)	18, 496, 595, 2197
StyI	CCWWGG	3 cut(s)	200, 1346, 1355
TaaI	ACNGT	8 cut(s)	374, 426, 890, 1114, 1298, 1373, 2007, 2185
TaiI	ACGT	5 cut(s)	975, 1195, 1234, 2115, 2223
TaqI	TCGA	2 cut(s)	1014, 1875
TatI	WGTACW	1 cut(s)	1884
TfiI	GAWTC	4 cut(s)	23, 411, 929, 1577
Tru1I	TTAA	5 cut(s)	699, 878, 980, 1143, 1286
Tru9I	TTAA	5 cut(s)	699, 878, 980, 1143, 1286
TscAI	CASTG	8 cut(s)	379, 484, 789, 1242, 1303, 1593, 1615, 2010
TseFI	GTSAC	4 cut(s)	780, 858, 2001, 2141
TseI	GCWGC	6 cut(s)	1351, 1391, 1420, 1813, 1949, 1967
Tsp45I	GTSAC	4 cut(s)	780, 858, 2001, 2141
TspDTI	ATGAA	4 cut(s)	810, 1643, 1854, 2150
TspGWI	ACGGA	1 cut(s)	1556
TspRI	CASTG	8 cut(s)	379, 484, 789, 1242, 1303, 1593, 1615, 2010
Tth111I	GACNNNGTC	1 cut(s)	856
Van91I	CCANNNNNTGG	1 cut(s)	2222
Vha464I	CTTAAG	2 cut(s)	698, 877
VneI	GTGCAC	1 cut(s)	1238
VpaK11BI	GGWCC	6 cut(s)	273, 592, 882, 1224, 1385, 2171
VspI	ATTAAT	1 cut(s)	1286
XapI	RAATTY	5 cut(s)	1533, 1542, 1800, 1906, 2259
XceI	RCATGY	3 cut(s)	176, 185, 1060
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1353
XmaJI	CCTAGG	1 cut(s)	200
XmiI	GTMKAC	1 cut(s)	527
XmnI	GAANNNNTTC	4 cut(s)	69, 144, 1308, 2067
XspI	CTAG	3 cut(s)	116, 201, 933
ZrmI	AGTACT	1 cut(s)	1886
Zsp2I	ATGCAT	2 cut(s)	950, 1516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.