Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001557

Physical Location & Seq

Genomic Coordinates Reverse (-)

16804862 .. 16809976

Gene Structure 5115 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG190700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2604 bp

ATGGCCAATCCTACTTACCAGGAATCCTTGTCATTTGGAGGCCCAGACCATCCTCAGGGTCAAGAAGAAGTTATTCCATGTGAGAGTGGAACCCTGAAGGTTTTGCTACATGGGTCCCTAGTCATATGGGTCAAGGAGGCCAAAAACCTTCCTGACATGGAGAGTTTTCGCAAGCTTGTGGGGCATGCAATTTCGAAGTTGCCTGGGACGAGCCGCAAAAATATAATCAGTTCTCCATATGTTACGATTTCTTTATCAAATGCTGTAATTGCGAGGACCTTTGTGAAGAGTAGTATCGAGAACCCTGTGTGGCAGCAACATTTTGATGTTCCTGTTGCTCATTACGCTTCACAAGTGAACTTTGTTGTGAAACACAGTGATGTTTTCGGCTCTAAGACCATAGGTTTTGTTGGAATCTCAGCTCAAAAGTTGTACTCTGGCATAAAAGTTGAGGGAACCTTCCCTATCCTTGACATCACCAGTGGTAAAAGCTATATGCCTGGAGTTGTGTTGAGCTTGTCAATTCAGTATACCGCGATTGAGAAAATGGCATTTTATAATCGCGGAGTAGGTTTAGATCCTGATCATCAAGGAGTCCCTGGTACTTACTTTCCTGTTAGGAAAGGCGGTAAAGTTACTCTTTATCAAGATGCTCATGTTCCTGATGGTTGCCTTCCCAACTTCAAGCTTGATGGCTGTCTTAAGTACGAGCATGGAAATTGTTGGCAAGACATATTTGATGCAATAAGTCAGGCCCGCCGTTTGATATACATAACTGGGTGGTCACTGCACCCCAAAGTCAGATTGCTTCGGAATAATAATGGTTCATCAGACAGCACATTAGGTGATCTGCTGAAGACCAAGTCACAGGAAGGTGTGAAAGTTCTGCTTCTTGTTTGGGACGATCCAACTTCTAGTAAGGGATTTAAAATGGAAGGGCTCATGCATACCAATGATGAAGACGCTCGACGTTTCTTTAAGGACTCTTCAGTTCAATTTCTACTCTGCCCTCGATCATCAGTCCAAAGCTGGGGGAAAAAGATGGAAGCTGGAATAGTCTATACCCATCATCAGAAAACTGTAATTGTGGACGCTGATGCTGGTCATTTAAAAAGAAAGATCATTGCATTTGTTGGAGGTCTTGACTTGTGCTTGGGACGTTATGATACTCCGGAGCATTCTATATTTAGGACCTTACGTACAGTGCACAAGGATGACAATCGTAACCCGACTTTCTCGAAACCCGTTATTGGGTGTCCAAGGCAGCCATGGCATGATTTGCACAGTAAAATTGATGGTCCAGCTGCTTATGACATCCTCACCAATTTTGAGCAGCGTTGGGGGATGGCTTCAAAACCACATGGTCTTCACAAACTTAAAGAACGAGGACTTCAAAAACTGAAATTACGAGGAGATGATGATGATGCATTACTCAAGATTGAGAAAATTCCTGAAATTCTTGGGATGACAGAGGTTCCTCGCTTGAGTGAGGATGACAAAGAAGCTTGGGATATTCAGGTTTTCCGTTCAATTGATTCCGATTCAGTGAAAGGATTTCCCGAAGACCCTGGAGAGGCTACAAGGATGAACCTTGTTTGTGGGAAAAATGTGCTGATAGACATGAGTATACATGCAGCATATGTAAAAGCAATCCGTGCGGCTCAACATTTTATTTACATAGAGAACCAGTACTTTCTTGGATCATCATATAATTGGAAGTCAAACATTGGTGATAGTGATACAGGTGCAAACAATTTGATACCGATGGAAATCGCTCTGAAAATAGCAAACAAAATCAAAGCAAATGAGAAGTTTTCTGTTTATATTGTCATCCCCATGTGGCCAGAAGGTGATCCCAATGATATGCCTCTTCAAAGAATTCTCCTTTGGCAGCATAAAACAATGCAAATGATGTATGAAATCATTTACAAGGCTCTAAAGGAGGTTGGGCTCGAAAATAAGAACTGTCCACAAGACTATTTGAATTTCTTTTGCCTCGGAAATCGTGAGAAACCAAGTGGAGATGCTGCAAATAATTTAAGTGCAACAAACACTCCCGAAGTACTCACTCAGAATAGTCGGCGATTTATGATTTATGTCCATTCTAAAGGAATGATAGTGGATGATGAATATGTTATAGTGGGATCTGCAAATATCAATCAGCGATCCATGGAAGGTCTCCGAGATACTGAAATAGCAATGGGGGCTTATCAGCCTCATCATACTTGGGCGAGAAAACTCTCAAGTCCACACGGAAAGATATATGGATACAGAATGTCACTGTGGGCAGAGCATTTAGGACTTGTTGAAGAATGTTTCAATCAGCCAGAGAGTCTTGAATGTGTTCAAAGGGTAAGGTCTTTGGGTGAGCAGAACTGGAGTCAATACTTGGCCGACGTAGTCACAGAAATGAAGGGTCACCTCCTCAAGTATCCGGTTGAAGTTGGTCCAACGGGCACGGTGGGGCCTCTTCCAGGGTGTCCAACATTTCCAGACGTTGGTGGCAATATATTGGGGAGTCTCGGCGACATAAAAATGAAGAATCTGCGTATCAGTAGCAGTGGGAGGACAATATCACTTAGAGGCGCCATCATCACCACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006629 GO:0006643 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008289 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009816 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0022626 GO:0030054 GO:0032501 GO:0032502 GO:0032991 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0071704 GO:0071944 GO:0098542 GO:1901981 GO:1902936 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

867

Amino Acids

96.95

Weight (kDa)

8.06

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	38 - 155	1.4e-12	C2 domain
PLDc_2	PF13091	696 - 734	2.2e-06	PLD-like domain
PLDc	PF00614	698 - 723	2.8e-08	Phospholipase D Active site motif
PLD_C	PF12357	770 - 840	9.3e-29	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11830 AT4G11830 AT4G11830 AT4G11830 AT4G11840 AT4G11840 AT4G11850
fragaria_vesca	FvH4_5g01274 FvH4_5g01290 FvH4_5g01290 FvH4_5g01290
malus_domestica	MD04G1069600.v1.1
prunus_persica	Prupe.5G088300_v2.0.a1 Prupe.5G088300_v2.0.a1
pyrus_communis	pycom04g06330
rosa_chinensis	RchiOBHm_Chr4g0413221 RchiOBHm_Chr7g0199651 RchiOBHm_Chr7g0199691 RchiOBHm_Chr7g0199711 RchiOBHm_Chr7g0199731
rosa_laevigata	RLG00000003775 RLG00000003776 RLG00000003777 RLG00000003778 RLG00000003779
rosa_multiflora	Rmu_co8400099.1_g000001 Rmu_sc0002748.1_g000025 Rmu_sc0002748.1_g000027 Rmu_sc0002748.1_g000028 Rmu_sc0009191.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256480 Rroxscaffold_3G00256490 Rroxscaffold_3G00256520
rosa_rugosa	Rorug07G0055600 Rorug07G0055800 Rorug07G0055900
rosa_samantha	Rh7AG180700 Rh7AG181000 Rh7AG181200 Rh7BG183600 Rh7BG183900 Rh7BG184100 Rh7CG190400 Rh7CG190600 Rh7CG190700 Rh7DG183600 Rh7DG183800
rosa_wichuraiana	Rw7G015870 Rw7G015880 Rw7G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	558
AccB1I	GGYRCC	1 cut(s)	2585
AccB7I	CCANNNNNTGG	1 cut(s)	2498
AccI	GTMKAC	2 cut(s)	530, 1627
AccII	CGCG	2 cut(s)	536, 564
AccIII	TCCGGA	1 cut(s)	1171
AciI	CCGC	6 cut(s)	214, 534, 564, 627, 757, 1658
AclWI	GGATC	6 cut(s)	572, 899, 1708, 1847, 2152, 2160
AcoI	YGGCCR	3 cut(s)	3, 1841, 2391
AcsI	RAATTY	4 cut(s)	1446, 1455, 1878, 1984
AcuI	CTGAAG	3 cut(s)	116, 875, 972
AcyI	GRCGYC	1 cut(s)	2586
AfaI	GTAC	6 cut(s)	434, 604, 707, 1201, 1691, 2064
AfiI	CCNNNNNNNGG	7 cut(s)	55, 1030, 1250, 1251, 1573, 2474, 2498
AflII	CTTAAG	1 cut(s)	701
AjnI	CCWGG	6 cut(s)	18, 202, 499, 598, 1567, 2473
AjuI	GAANNNNNNNTTGG	2 cut(s)	1870, 1902
AluBI	AGCT	9 cut(s)	175, 422, 492, 516, 688, 1029, 1049, 1304, 1505
AluI	AGCT	9 cut(s)	175, 422, 492, 516, 688, 1029, 1049, 1304, 1505
Alw21I	GWGCWC	1 cut(s)	1209
Alw26I	GTCTC	2 cut(s)	2183, 2525
Alw44I	GTGCAC	1 cut(s)	1205
AlwI	GGATC	6 cut(s)	572, 899, 1708, 1847, 2152, 2160
Aor13HI	TCCGGA	1 cut(s)	1171
AoxI	GGCC	7 cut(s)	3, 40, 138, 753, 1841, 2391, 2465
ApaLI	GTGCAC	1 cut(s)	1205
ApeKI	GCWGC	7 cut(s)	313, 1264, 1304, 1333, 1634, 1891, 2027
ApoI	RAATTY	4 cut(s)	1446, 1455, 1878, 1984
Asp700I	GAANNNNTTC	2 cut(s)	72, 2343
AspLEI	GCGC	1 cut(s)	2588
AspS9I	GGNCC	8 cut(s)	41, 114, 276, 754, 1191, 1298, 2447, 2465
AsuHPI	GGTGA	8 cut(s)	469, 857, 1312, 1742, 1862, 2378, 2411, 2587
AsuII	TTCGAA	1 cut(s)	194
AvaII	GGWCC	5 cut(s)	114, 276, 1191, 1298, 2447
AxyI	CCTNAGG	1 cut(s)	54
BaeGI	GKGCMC	2 cut(s)	1209, 2459
BalI	TGGCCA	2 cut(s)	5, 1843
BanI	GGYRCC	1 cut(s)	2585
BanII	GRGCYC	2 cut(s)	942, 1953
BbsI	GAAGAC	4 cut(s)	863, 966, 1358, 1569
Bbv12I	GWGCWC	1 cut(s)	1209
BbvI	GCAGC	7 cut(s)	325, 1276, 1291, 1345, 1646, 1903, 2014
BccI	CCATC	9 cut(s)	57, 659, 686, 1036, 1074, 1289, 1339, 1759, 2597
BceAI	ACGGC	1 cut(s)	744
BciT130I	CCWGG	6 cut(s)	20, 204, 501, 600, 1569, 2475
BciVI	GTATCC	2 cut(s)	2261, 2442
BclI	TGATCA	1 cut(s)	583
BcoDI	GTCTC	2 cut(s)	2183, 2525
BfaI	CTAG	2 cut(s)	119, 915
BfoI	RGCGCY	1 cut(s)	2589
BfrI	CTTAAG	1 cut(s)	701
BfuI	GTATCC	2 cut(s)	2261, 2442
BisI	GCNGC	9 cut(s)	214, 314, 1265, 1305, 1334, 1635, 1659, 1892, 2028
BlsI	GCNGC	9 cut(s)	215, 315, 1266, 1306, 1335, 1636, 1660, 1893, 2029
BmcAI	AGTACT	2 cut(s)	1691, 2064
Bme1390I	CCNGG	6 cut(s)	20, 204, 501, 600, 1569, 2475
Bme18I	GGWCC	5 cut(s)	114, 276, 1191, 1298, 2447
BmgT120I	GGNCC	8 cut(s)	41, 114, 276, 754, 1191, 1298, 2447, 2465
BmiI	GGNNCC	7 cut(s)	91, 115, 116, 457, 1476, 2466, 2587
BmrFI	CCNGG	6 cut(s)	20, 204, 501, 600, 1569, 2475
BmrI	ACTGGG	1 cut(s)	786
BmsI	GCATC	5 cut(s)	640, 730, 1087, 1414, 2014
BmuI	ACTGGG	1 cut(s)	786
BpiI	GAAGAC	4 cut(s)	863, 966, 1358, 1569
BpmI	CTGGAG	3 cut(s)	522, 1590, 2398
Bpu14I	TTCGAA	1 cut(s)	194
BpuEI	CTTGAG	4 cut(s)	1418, 1504, 2227, 2411
BsaAI	YACGTR	1 cut(s)	1199
BsaBI	GATNNNNATC	3 cut(s)	582, 1218, 1769
BsaHI	GRCGYC	1 cut(s)	2586
BsaI	GGTCTC	1 cut(s)	2183
BsaJI	CCNNGG	8 cut(s)	203, 598, 1259, 1268, 1567, 1996, 2169, 2474
BsaWI	WCCGGW	2 cut(s)	1171, 2434
BsaXI	ACNNNNNCTCC	2 cut(s)	2038, 2068
Bsc4I	CCNNNNNNNGG	7 cut(s)	55, 1030, 1250, 1251, 1573, 2474, 2498
Bse1I	ACTGG	4 cut(s)	480, 781, 1687, 2381
Bse21I	CCTNAGG	1 cut(s)	54
Bse3DI	GCAATG	2 cut(s)	1122, 2205
Bse8I	GATNNNNATC	3 cut(s)	582, 1218, 1769
BseAI	TCCGGA	1 cut(s)	1171
BseBI	CCWGG	6 cut(s)	20, 204, 501, 600, 1569, 2475
BseDI	CCNNGG	8 cut(s)	203, 598, 1259, 1268, 1567, 1996, 2169, 2474
BseGI	GGATG	9 cut(s)	49, 1219, 1314, 1350, 1470, 1498, 1590, 1830, 2128
BseJI	GATNNNNATC	3 cut(s)	582, 1218, 1769
BseLI	CCNNNNNNNGG	7 cut(s)	55, 1030, 1250, 1251, 1573, 2474, 2498
BseMI	GCAATG	2 cut(s)	1122, 2205
BseMII	CTCAG	3 cut(s)	68, 432, 2084
BseNI	ACTGG	4 cut(s)	480, 781, 1687, 2381
BseRI	GAGGAG	2 cut(s)	1425, 2414
BseSI	GKGCMC	2 cut(s)	1209, 2459
BseXI	GCAGC	7 cut(s)	325, 1276, 1291, 1345, 1646, 1903, 2014
BseYI	CCCAGC	1 cut(s)	1029
BsgI	GTGCAG	1 cut(s)	773
Bsh1236I	CGCG	2 cut(s)	536, 564
BshFI	GGCC	7 cut(s)	5, 42, 140, 755, 1843, 2393, 2467
BshNI	GGYRCC	1 cut(s)	2585
BsiHKAI	GWGCWC	1 cut(s)	1209
BsiSI	CCGG	2 cut(s)	1172, 2435
BslFI	GGGAC	5 cut(s)	100, 220, 581, 914, 1170
BslI	CCNNNNNNNGG	7 cut(s)	55, 1030, 1250, 1251, 1573, 2474, 2498
BsmAI	GTCTC	2 cut(s)	2183, 2525
BsmFI	GGGAC	5 cut(s)	100, 220, 581, 914, 1170
BsmI	GAATGC	1 cut(s)	1177
BsnI	GGCC	7 cut(s)	5, 42, 140, 755, 1843, 2393, 2467
Bso31I	GGTCTC	1 cut(s)	2183
Bsp119I	TTCGAA	1 cut(s)	194
Bsp1286I	GDGCHC	4 cut(s)	942, 1209, 1953, 2459
Bsp13I	TCCGGA	1 cut(s)	1171
Bsp19I	CCATGG	2 cut(s)	1268, 2169
BspACI	CCGC	6 cut(s)	214, 534, 564, 627, 757, 1658
BspANI	GGCC	7 cut(s)	5, 42, 140, 755, 1843, 2393, 2467
BspCNI	CTCAG	3 cut(s)	67, 431, 2083
BspEI	TCCGGA	1 cut(s)	1171
BspFNI	CGCG	2 cut(s)	536, 564
BspLI	GGNNCC	7 cut(s)	91, 115, 116, 457, 1476, 2466, 2587
BspPI	GGATC	6 cut(s)	572, 899, 1708, 1847, 2152, 2160
BspT104I	TTCGAA	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	2585
BspTI	CTTAAG	1 cut(s)	701
BspTNI	GGTCTC	1 cut(s)	2183
BsrDI	GCAATG	2 cut(s)	1122, 2205
BsrI	ACTGG	4 cut(s)	480, 781, 1687, 2381
BssECI	CCNNGG	8 cut(s)	203, 598, 1259, 1268, 1567, 1996, 2169, 2474
BssNAI	GTATAC	2 cut(s)	531, 1628
BssNI	GRCGYC	1 cut(s)	2586
BssT1I	CCWWGG	3 cut(s)	1259, 1268, 2169
Bst1107I	GTATAC	2 cut(s)	531, 1628
Bst2UI	CCWGG	6 cut(s)	20, 204, 501, 600, 1569, 2475
Bst4CI	ACNGT	7 cut(s)	377, 1081, 1204, 1286, 1967, 2283, 2461
Bst6I	CTCTTC	4 cut(s)	281, 991, 1875, 2475
BstACI	GRCGYC	1 cut(s)	2586
BstAFI	CTTAAG	1 cut(s)	701
BstAPI	GCANNNNNTGC	2 cut(s)	1279, 1655
BstBAI	YACGTR	1 cut(s)	1199
BstBI	TTCGAA	1 cut(s)	194
BstC8I	GCNNGC	3 cut(s)	173, 186, 757
BstDEI	CTNAG	5 cut(s)	54, 393, 418, 2070, 2579
BstDSI	CCRYGG	2 cut(s)	1268, 2169
BstEII	GGTNACC	1 cut(s)	2417
BstENI	CCTNNNNNAGG	1 cut(s)	2472
BstF5I	GGATG	9 cut(s)	49, 1219, 1314, 1350, 1470, 1498, 1590, 1830, 2128
BstFNI	CGCG	2 cut(s)	536, 564
BstH2I	RGCGCY	1 cut(s)	2589
BstHHI	GCGC	1 cut(s)	2588
BstMAI	GTCTC	2 cut(s)	2183, 2525
BstMWI	GCNNNNNNNGC	7 cut(s)	181, 269, 344, 1270, 1279, 1655, 2204
BstNI	CCWGG	6 cut(s)	20, 204, 501, 600, 1569, 2475
BstNSI	RCATGY	2 cut(s)	188, 1634
BstPI	GGTNACC	1 cut(s)	2417
BstSCI	CCNGG	6 cut(s)	18, 202, 499, 598, 1567, 2473
BstSLI	GKGCMC	2 cut(s)	1209, 2459
BstSNI	TACGTA	1 cut(s)	1199
BstUI	CGCG	2 cut(s)	536, 564
BstV1I	GCAGC	7 cut(s)	325, 1276, 1291, 1345, 1646, 1903, 2014
BstV2I	GAAGAC	4 cut(s)	863, 966, 1358, 1569
BstX2I	RGATCY	2 cut(s)	577, 2144
BstYI	RGATCY	2 cut(s)	577, 2144
BstZ17I	GTATAC	2 cut(s)	531, 1628
Bsu36I	CCTNAGG	1 cut(s)	54
BsuI	GTATCC	2 cut(s)	2261, 2442
BsuRI	GGCC	7 cut(s)	5, 42, 140, 755, 1843, 2393, 2467
BtgI	CCRYGG	2 cut(s)	1268, 2169
BtsCI	GGATG	9 cut(s)	49, 1219, 1314, 1350, 1470, 1498, 1590, 1830, 2128
BtsI	GCAGTG	2 cut(s)	785, 2566
BtsIMutI	CAGTG	7 cut(s)	382, 487, 785, 1209, 1551, 2279, 2566
Cac8I	GCNNGC	3 cut(s)	173, 186, 757
CfoI	GCGC	1 cut(s)	2588
Cfr13I	GGNCC	8 cut(s)	41, 114, 276, 754, 1191, 1298, 2447, 2465
CseI	GACGC	2 cut(s)	971, 1100
Csp6I	GTAC	6 cut(s)	433, 603, 706, 1200, 1690, 2063
CviQI	GTAC	6 cut(s)	433, 603, 706, 1200, 1690, 2063
DdeI	CTNAG	5 cut(s)	54, 393, 418, 2070, 2579
DinI	GGCGCC	1 cut(s)	2587
DraI	TTTAAA	2 cut(s)	928, 1110
EaeI	YGGCCR	3 cut(s)	3, 1841, 2391
Eam1104I	CTCTTC	4 cut(s)	281, 991, 1875, 2475
EarI	CTCTTC	4 cut(s)	281, 991, 1875, 2475
Eco105I	TACGTA	1 cut(s)	1199
Eco130I	CCWWGG	3 cut(s)	1259, 1268, 2169
Eco24I	GRGCYC	2 cut(s)	942, 1953
Eco31I	GGTCTC	1 cut(s)	2183
Eco47I	GGWCC	5 cut(s)	114, 276, 1191, 1298, 2447
Eco57I	CTGAAG	3 cut(s)	116, 875, 972
Eco81I	CCTNAGG	1 cut(s)	54
Eco91I	GGTNACC	1 cut(s)	2417
EcoNI	CCTNNNNNAGG	1 cut(s)	2472
EcoO109I	RGGNCCY	4 cut(s)	114, 276, 1191, 2465
EcoO65I	GGTNACC	1 cut(s)	2417
EcoRI	GAATTC	1 cut(s)	1878
EcoRII	CCWGG	6 cut(s)	18, 202, 499, 598, 1567, 2473
EcoT14I	CCWWGG	3 cut(s)	1259, 1268, 2169
EcoT22I	ATGCAT	2 cut(s)	948, 1429
EcoT38I	GRGCYC	2 cut(s)	942, 1953
EgeI	GGCGCC	1 cut(s)	2587
EheI	GGCGCC	1 cut(s)	2587
ErhI	CCWWGG	3 cut(s)	1259, 1268, 2169
FalI	AAGNNNNNCTT	4 cut(s)	624, 656, 873, 905
FaqI	GGGAC	5 cut(s)	100, 220, 581, 914, 1170
FauI	CCCGC	1 cut(s)	764
FauNDI	CATATG	3 cut(s)	125, 238, 1639
FbaI	TGATCA	1 cut(s)	583
FblI	GTMKAC	2 cut(s)	530, 1627
Fnu4HI	GCNGC	9 cut(s)	214, 314, 1265, 1305, 1334, 1635, 1659, 1892, 2028
FokI	GGATG	9 cut(s)	36, 1226, 1301, 1357, 1477, 1505, 1597, 1817, 2135
FriOI	GRGCYC	2 cut(s)	942, 1953
Fsp4HI	GCNGC	9 cut(s)	214, 314, 1265, 1305, 1334, 1635, 1659, 1892, 2028
FspBI	CTAG	2 cut(s)	119, 915
GlaI	GCGC	1 cut(s)	2587
GluI	GCNGC	9 cut(s)	214, 314, 1265, 1305, 1334, 1635, 1659, 1892, 2028
GsaI	CCCAGC	1 cut(s)	1033
GsuI	CTGGAG	3 cut(s)	522, 1590, 2398
HaeII	RGCGCY	1 cut(s)	2589
HaeIII	GGCC	7 cut(s)	5, 42, 140, 755, 1843, 2393, 2467
HapII	CCGG	2 cut(s)	1172, 2435
HgaI	GACGC	2 cut(s)	971, 1100
HhaI	GCGC	1 cut(s)	2588
Hin1I	GRCGYC	1 cut(s)	2586
Hin6I	GCGC	1 cut(s)	2586
HinP1I	GCGC	1 cut(s)	2586
HindIII	AAGCTT	3 cut(s)	173, 686, 1503
HpaII	CCGG	2 cut(s)	1172, 2435
HphI	GGTGA	8 cut(s)	469, 857, 1312, 1742, 1862, 2378, 2411, 2587
Hpy166II	GTNNAC	7 cut(s)	358, 531, 1090, 1207, 1628, 1970, 2249
Hpy188I	TCNGA	9 cut(s)	803, 813, 832, 1074, 1540, 1779, 2000, 2073, 2183
Hpy8I	GTNNAC	7 cut(s)	358, 531, 1090, 1207, 1628, 1970, 2249
Hpy99I	CGWCG	2 cut(s)	972, 2399
HpyAV	CCTTC	9 cut(s)	91, 158, 469, 683, 866, 929, 1841, 2168, 2407
HpyCH4III	ACNGT	7 cut(s)	377, 1081, 1204, 1286, 1967, 2283, 2461
HpyCH4IV	ACGT	5 cut(s)	970, 1159, 1198, 2397, 2496
HpyF10VI	GCNNNNNNNGC	7 cut(s)	181, 269, 344, 1270, 1279, 1655, 2204
HpyF3I	CTNAG	5 cut(s)	54, 393, 418, 2070, 2579
HpySE526I	ACGT	5 cut(s)	970, 1159, 1198, 2397, 2496
Hsp92I	GRCGYC	1 cut(s)	2586
HspAI	GCGC	1 cut(s)	2586
KasI	GGCGCC	1 cut(s)	2585
KflI	GGGWCCC	1 cut(s)	114
Kpn2I	TCCGGA	1 cut(s)	1171
Ksp22I	TGATCA	1 cut(s)	583
LmnI	GCTCC	1 cut(s)	1174
Lsp1109I	GCAGC	7 cut(s)	325, 1276, 1291, 1345, 1646, 1903, 2014
LweI	GCATC	5 cut(s)	640, 730, 1087, 1414, 2014
MaeI	CTAG	2 cut(s)	119, 915
MaeII	ACGT	5 cut(s)	970, 1159, 1198, 2397, 2496
MaeIII	GTNAC	8 cut(s)	241, 634, 783, 864, 1223, 2277, 2401, 2417
MfeI	CAATTG	1 cut(s)	1530
MflI	RGATCY	2 cut(s)	577, 2144
MhlI	GDGCHC	4 cut(s)	942, 1209, 1953, 2459
MlsI	TGGCCA	2 cut(s)	5, 1843
MluNI	TGGCCA	2 cut(s)	5, 1843
Mly113I	GGCGCC	1 cut(s)	2586
MlyI	GAGTC	5 cut(s)	603, 977, 2341, 2389, 2527
MmeI	TCCRAC	5 cut(s)	391, 932, 1114, 2474, 2507
Mox20I	TGGCCA	2 cut(s)	5, 1843
Mph1103I	ATGCAT	2 cut(s)	948, 1429
MroI	TCCGGA	1 cut(s)	1171
MroXI	GAANNNNTTC	2 cut(s)	72, 2343
MscI	TGGCCA	2 cut(s)	5, 1843
MseI	TTAA	6 cut(s)	702, 927, 978, 1109, 1377, 2039
MslI	CAYNNNNRTG	7 cut(s)	324, 378, 951, 1212, 1835, 2408, 2534
Msp20I	TGGCCA	2 cut(s)	5, 1843
MspA1I	CMGCKG	1 cut(s)	1304
MspCI	CTTAAG	1 cut(s)	701
MspI	CCGG	2 cut(s)	1172, 2435
MspR9I	CCNGG	6 cut(s)	20, 204, 501, 600, 1569, 2475
MunI	CAATTG	1 cut(s)	1530
Mva1269I	GAATGC	1 cut(s)	1177
MvaI	CCWGG	6 cut(s)	20, 204, 501, 600, 1569, 2475
MvnI	CGCG	2 cut(s)	536, 564
MwoI	GCNNNNNNNGC	7 cut(s)	181, 269, 344, 1270, 1279, 1655, 2204
NarI	GGCGCC	1 cut(s)	2586
NcoI	CCATGG	2 cut(s)	1268, 2169
NdeI	CATATG	3 cut(s)	125, 238, 1639
NlaIV	GGNNCC	7 cut(s)	91, 115, 116, 457, 1476, 2466, 2587
NmeAIII	GCCGAG	1 cut(s)	2502
NmuCI	GTSAC	5 cut(s)	783, 864, 2277, 2401, 2417
NsiI	ATGCAT	2 cut(s)	948, 1429
NspI	RCATGY	2 cut(s)	188, 1634
NspV	TTCGAA	1 cut(s)	194
PaeI	GCATGC	1 cut(s)	188
PctI	GAATGC	1 cut(s)	1177
PdmI	GAANNNNTTC	2 cut(s)	72, 2343
PfeI	GAWTC	5 cut(s)	23, 414, 1535, 1541, 2542
PflFI	GACNNNGTC	2 cut(s)	862, 2399
PflMI	CCANNNNNTGG	1 cut(s)	2498
PkrI	GCNGC	9 cut(s)	215, 315, 1266, 1306, 1335, 1636, 1660, 1893, 2029
PleI	GAGTC	5 cut(s)	602, 977, 2340, 2388, 2526
PluTI	GGCGCC	1 cut(s)	2589
PpsI	GAGTC	5 cut(s)	602, 977, 2340, 2388, 2526
Ppu21I	YACGTR	1 cut(s)	1199
PpuMI	RGGWCCY	3 cut(s)	114, 276, 1191
PsiI	TTATAA	1 cut(s)	558
Psp5II	RGGWCCY	3 cut(s)	114, 276, 1191
Psp6I	CCWGG	6 cut(s)	18, 202, 499, 598, 1567, 2473
PspEI	GGTNACC	1 cut(s)	2417
PspFI	CCCAGC	1 cut(s)	1029
PspGI	CCWGG	6 cut(s)	18, 202, 499, 598, 1567, 2473
PspN4I	GGNNCC	7 cut(s)	91, 115, 116, 457, 1476, 2466, 2587
PspPI	GGNCC	8 cut(s)	41, 114, 276, 754, 1191, 1298, 2447, 2465
PspPPI	RGGWCCY	3 cut(s)	114, 276, 1191
PsuI	RGATCY	2 cut(s)	577, 2144
PsyI	GACNNNGTC	2 cut(s)	862, 2399
PvuII	CAGCTG	1 cut(s)	1304
RsaI	GTAC	6 cut(s)	434, 604, 707, 1201, 1691, 2064
RsaNI	GTAC	6 cut(s)	433, 603, 706, 1200, 1690, 2063
RseI	CAYNNNNRTG	7 cut(s)	324, 378, 951, 1212, 1835, 2408, 2534
SaqAI	TTAA	6 cut(s)	702, 927, 978, 1109, 1377, 2039
SatI	GCNGC	9 cut(s)	214, 314, 1265, 1305, 1334, 1635, 1659, 1892, 2028
Sau96I	GGNCC	8 cut(s)	41, 114, 276, 754, 1191, 1298, 2447, 2465
ScaI	AGTACT	2 cut(s)	1691, 2064
SchI	GAGTC	5 cut(s)	603, 977, 2341, 2389, 2527
ScrFI	CCNGG	6 cut(s)	20, 204, 501, 600, 1569, 2475
SduI	GDGCHC	4 cut(s)	942, 1209, 1953, 2459
SfaNI	GCATC	5 cut(s)	640, 730, 1087, 1414, 2014
SfoI	GGCGCC	1 cut(s)	2587
SfuI	TTCGAA	1 cut(s)	194
SinI	GGWCC	5 cut(s)	114, 276, 1191, 1298, 2447
SmiMI	CAYNNNNRTG	7 cut(s)	324, 378, 951, 1212, 1835, 2408, 2534
SmlI	CTYRAG	5 cut(s)	701, 1433, 1483, 2242, 2426
SmoI	CTYRAG	5 cut(s)	701, 1433, 1483, 2242, 2426
SnaBI	TACGTA	1 cut(s)	1199
SphI	GCATGC	1 cut(s)	188
SsiI	CCGC	6 cut(s)	214, 534, 564, 627, 757, 1658
SspDI	GGCGCC	1 cut(s)	2585
SspMI	CTAG	2 cut(s)	119, 915
StyD4I	CCNGG	6 cut(s)	18, 202, 499, 598, 1567, 2473
StyI	CCWWGG	3 cut(s)	1259, 1268, 2169
TaaI	ACNGT	7 cut(s)	377, 1081, 1204, 1286, 1967, 2283, 2461
TaiI	ACGT	5 cut(s)	973, 1162, 1201, 2400, 2499
TaqI	TCGA	6 cut(s)	194, 297, 967, 1012, 1238, 1953
TatI	WGTACW	3 cut(s)	432, 1689, 2062
TauI	GCSGC	2 cut(s)	216, 1661
TfiI	GAWTC	5 cut(s)	23, 414, 1535, 1541, 2542
Tru1I	TTAA	6 cut(s)	702, 927, 978, 1109, 1377, 2039
Tru9I	TTAA	6 cut(s)	702, 927, 978, 1109, 1377, 2039
TscAI	CASTG	7 cut(s)	382, 487, 792, 1209, 1551, 2286, 2566
TseFI	GTSAC	5 cut(s)	783, 864, 2277, 2401, 2417
TseI	GCWGC	7 cut(s)	313, 1264, 1304, 1333, 1634, 1891, 2027
Tsp45I	GTSAC	5 cut(s)	783, 864, 2277, 2401, 2417
TspDTI	ATGAA	7 cut(s)	816, 972, 1601, 1932, 2142, 2426, 2552
TspGWI	ACGGA	3 cut(s)	1514, 1643, 2268
TspRI	CASTG	7 cut(s)	382, 487, 792, 1209, 1551, 2286, 2566
Tth111I	GACNNNGTC	2 cut(s)	862, 2399
Van91I	CCANNNNNTGG	1 cut(s)	2498
Vha464I	CTTAAG	1 cut(s)	701
VneI	GTGCAC	1 cut(s)	1205
VpaK11BI	GGWCC	5 cut(s)	114, 276, 1191, 1298, 2447
XagI	CCTNNNNNAGG	1 cut(s)	2472
XapI	RAATTY	4 cut(s)	1446, 1455, 1878, 1984
XceI	RCATGY	2 cut(s)	188, 1634
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1266, 1694
XmiI	GTMKAC	2 cut(s)	530, 1627
XmnI	GAANNNNTTC	2 cut(s)	72, 2343
XspI	CTAG	2 cut(s)	119, 915
ZrmI	AGTACT	2 cut(s)	1691, 2064
Zsp2I	ATGCAT	2 cut(s)	948, 1429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.