Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001557

Physical Location & Seq

Genomic Coordinates Forward (+)

800879 .. 807529

Gene Structure 6651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01290.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2541 bp

ATGTCTAGTCATGGTTATACTGAATCCTTGTCGTTTGGAGGCTCAGGCCATATTCAGGGTCAGCAAGTTGTGCCGTTTAGGACAGGTAGTATATCTCTGAAGCTTCAGCTGCTTCATGGGAACTTGGTTATATTGGTCAAAGAGGCCAAGAACCTTCCTAACATGGATGCGTTTCACAAGACTCTGGGGGATATTGTTGCTAAATTGCCTGGGACTGGCAGCAACAAGATCACTAGTGATCCGTATGTGACGGTTTCAGTTGCACGTGCGGTGGTTGGGAGGACCTTTGTGATTAGTAATAGTGAGAATCCTGTTTGGGAGCAGTATTTTGATGTTCCGGTTGCGCATTATGCTTCACAAGTGCATTTTGTTGTGAAAGATAGTGATGTTGTGGGTTCACAGCTCATAGGTGTTGTGGCAATCCCAGTTGAGCAGATATATTCCGGCATGAAAGTTGAGGGGACTTATCCGATTCTTGGTTCCAATGGGAAGCCTTGTAAGCCTGGAGCTGCTTTGAGTTTGTCGATTCAGTATATCCCTATTGAGAAATTGACCTTTAATATGAATGGGGTAGGTTTGGATCCTGATCATCAAGGGGTTCCTGGTACTTATTTTCCTGTTAGGAGAGGCGGTAAGGTTACTCTATATCAAGATGCTCATGTGCCTGATGGTTGCCTTCCGAGTATCAAGCTTGACGACAATGTTGAGTATGAGCATGGCAGTTGTTGGCAAGACATGTTTGATGCAATAAGTCAGGCTCGTCGTTTGATATACATTGTGGGGTGGTCAGTGTATCACAAAGTTAGGTTGCTCCGGGATGGTAGAACAGATTGCATGTTAGGTGATCTTCTTAAGAACAAGTCGCAGGAAGGTGTGAGAGTGCTGCTTCTTGTTTGGGATGATCCAACTTCTACCAGCATTATGGGATATAAAACGGATGGAATCATGCAAACCAATGATGAGGAAACTCGCCGTTTCTTCAAGCATTCTTCAGTCCAAGTGCTACTTTGCCCTCGATCAGCTGGAAAGAGTAGCTGGGTCAAGAAACAGGAAGTAGGAACAATCTATACCCACCATCAGAAAACAGTGATTGTTGATGCTGATGCAGGTCAATTTAGAAGAAAGATAATTGCATTTGTTGGTGGTCTGGATCTGTGCCTGGGACGCTATGATACTCCAGAGCATCCTATATTTAGGACTTTACAGACGGTCCACAAGGATGATAATCGTAACCCTACTTTTTCGGACCGTGTTGTTGGTTGTCCAAGGCAGCCATGGCATGATTTGCACAGTAAAATTGAAGGTCCAGCAGCATACGATATCCTCGCCAATTTTCAGGAGCGTTGGTTAAAAGCTTCAAAACCACGTGGGATTCAGAAACTAAAAGGACATGATGATGCATTACTCAAGATTGAGAGGATCCCTGAAATTATGGGGGTGGCGGATCTTCCTCAACCGAGTGAGGATGATCTAGAAGCTTGGGACGTTCAGGTTTTTCGTTCAATTGATTCCAATTCTGTGAGAGGATTTCCAGAAAACCCAAAAGATGCTTCAAGCATGAACCTGGTGTGTGGGAAAAATGTTTTGATAGACATGAGTATACATGCCGCATATGTCAAAGCAATCCGTGCTGCTCAACATTTCATTTACATAGAGAACCAGTACTTCCTTGGATCATCATATAATTGGACCTTGTACAGTGATTTAGGTGCAAACAATTTAATACCAATGGAAATTGCTCTCAAAATTGTGAATAAAATTAAAGCAAATGAGAGGTTTGCTGTATATATTGTTATCCCCATGTGGCCGGAAGGTGTTCCTACTAGCACTCCTCTTCAACGAATTCTCTTTTGGCAGCATAAAACAATGCAAATGATGTATGAAATGATTTACATGGCTTTACTGGAGGCTGGACTTCACAATAGATATTCTCCACAAGACTATTTGAATTTCTTTTGCCTCGGTAATCGTGAGAAACCAAGTGGTGAAGAAAGTTCTGCTGCAAAAACAATAAATGAAGCAAACAAAAAAGAAGCAAACACTCCTCAAGCACTCACTCGGAAGAACCGGCGCTTTATGATTTATGTTCATTCAAAAGGAATAATAGTGGACGATGAATATGTCATAATTGGATCTGCAAATATCAATCAGCGATCCATGGAAGGTACCCGAGATACTGAAATAGCAATGGGGGCATATCAGCCACATCACACCTGGGCAAGGAAACTCTCAAGTCCACATGGACAGATATATGGATACAGAACATCACTTTGGGCAGAACATATTGGTTTTCTTGAAGAATGTTTCAAGCAACCAGAGAGTCTCGAATGTGTGCAACGGGTAAGATCTTTGAGCGAGCAGAACTGGAGGCAATATGTGTCTGATGAGATTACAGAAATGAAGGGCCATCTGCTGAGATATCCGGTTGAAGTAGATCAAACGGGCAAGGTGAAGCATCTTCCGGGCTGTGCAACATTTCCAGATGTAGGTGGCAACATACTTGGGGATTTTAGAGCCATCCAAGAAAATCTCACTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006629 GO:0006643 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008289 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009790 GO:0009791 GO:0009793 GO:0009814 GO:0009816 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0022414 GO:0022626 GO:0030054 GO:0032501 GO:0032502 GO:0032991 GO:0035091 GO:0042221 GO:0042578 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0045087 GO:0046686 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0061458 GO:0071704 GO:0071944 GO:0098542 GO:1901981 GO:1902936 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

847

Amino Acids

95.16

Weight (kDa)

7.0

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	22 - 103	2.7e-13	C2 domain
PLDc_2	PF13091	612 - 676	1e-06	PLD-like domain
PLDc	PF00614	640 - 665	6.5e-08	Phospholipase D Active site motif
PLD_C	PF12357	712 - 782	1.7e-31	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001557)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11830 AT4G11830 AT4G11830 AT4G11830 AT4G11840 AT4G11840 AT4G11850
fragaria_vesca	FvH4_5g01274 FvH4_5g01290 FvH4_5g01290 FvH4_5g01290
malus_domestica	MD04G1069600.v1.1
prunus_persica	Prupe.5G088300_v2.0.a1 Prupe.5G088300_v2.0.a1
pyrus_communis	pycom04g06330
rosa_chinensis	RchiOBHm_Chr4g0413221 RchiOBHm_Chr7g0199651 RchiOBHm_Chr7g0199691 RchiOBHm_Chr7g0199711 RchiOBHm_Chr7g0199731
rosa_laevigata	RLG00000003775 RLG00000003776 RLG00000003777 RLG00000003778 RLG00000003779
rosa_multiflora	Rmu_co8400099.1_g000001 Rmu_sc0002748.1_g000025 Rmu_sc0002748.1_g000027 Rmu_sc0002748.1_g000028 Rmu_sc0009191.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256480 Rroxscaffold_3G00256490 Rroxscaffold_3G00256520
rosa_rugosa	Rorug07G0055600 Rorug07G0055800 Rorug07G0055900
rosa_samantha	Rh7AG180700 Rh7AG181000 Rh7AG181200 Rh7BG183600 Rh7BG183900 Rh7BG184100 Rh7CG190400 Rh7CG190600 Rh7CG190700 Rh7DG183600 Rh7DG183800
rosa_wichuraiana	Rw7G015870 Rw7G015880 Rw7G015890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	345
Acc36I	ACCTGC	1 cut(s)	1097
Acc65I	GGTACC	1 cut(s)	2165
AccB1I	GGYRCC	1 cut(s)	2165
AccI	GTMKAC	1 cut(s)	1600
AciI	CCGC	4 cut(s)	269, 630, 1442, 1608
AcoI	YGGCCR	1 cut(s)	1805
AcsI	RAATTY	2 cut(s)	1842, 1948
AcuI	CTGAAG	3 cut(s)	89, 119, 975
AcvI	CACGTG	2 cut(s)	266, 1367
AfaI	GTAC	4 cut(s)	607, 1664, 1697, 2167
AfiI	CCNNNNNNNGG	5 cut(s)	55, 215, 476, 2220, 2486
AflII	CTTAAG	1 cut(s)	851
AflIII	ACRYGT	1 cut(s)	735
AhlI	ACTAGT	1 cut(s)	233
AjnI	CCWGG	6 cut(s)	208, 502, 601, 1158, 1563, 2213
AjuI	GAANNNNNNNTTGG	6 cut(s)	1534, 1566, 1834, 1866, 2254, 2286
AluBI	AGCT	9 cut(s)	103, 109, 403, 509, 691, 1022, 1035, 1355, 1478
AluI	AGCT	9 cut(s)	103, 109, 403, 509, 691, 1022, 1035, 1355, 1478
Alw26I	GTCTC	1 cut(s)	2327
Ama87I	CYCGRG	1 cut(s)	2169
AoxI	GGCC	4 cut(s)	46, 144, 1805, 2404
ApeKI	GCWGC	9 cut(s)	109, 219, 509, 883, 1270, 1310, 1631, 1855, 2000
ApoI	RAATTY	2 cut(s)	1842, 1948
Asp700I	GAANNNNTTC	1 cut(s)	1815
Asp718I	GGTACC	1 cut(s)	2165
AspLEI	GCGC	2 cut(s)	346, 2073
AspS9I	GGNCC	6 cut(s)	282, 1210, 1246, 1304, 1689, 2404
AsuC2I	CCSGG	2 cut(s)	815, 2463
AsuHPI	GGTGA	3 cut(s)	854, 1997, 2461
AvaI	CYCGRG	1 cut(s)	2169
AvaII	GGWCC	5 cut(s)	282, 1210, 1246, 1304, 1689
BamHI	GGATCC	2 cut(s)	580, 1419
BanI	GGYRCC	1 cut(s)	2165
BbrPI	CACGTG	2 cut(s)	266, 1367
BbvI	GCAGC	9 cut(s)	96, 231, 496, 870, 1282, 1322, 1618, 1867, 1987
BccI	CCATC	6 cut(s)	662, 812, 932, 1083, 2415, 2525
BceAI	ACGGC	2 cut(s)	58, 957
BciT130I	CCWGG	6 cut(s)	210, 504, 603, 1160, 1565, 2215
BciVI	GTATCC	1 cut(s)	2249
BclI	TGATCA	1 cut(s)	586
BcnI	CCSGG	2 cut(s)	815, 2463
BcoDI	GTCTC	1 cut(s)	2327
BcuI	ACTAGT	1 cut(s)	233
BfaI	CTAG	4 cut(s)	6, 234, 1472, 1824
BfoI	RGCGCY	1 cut(s)	2074
BfrI	CTTAAG	1 cut(s)	851
BfuAI	ACCTGC	1 cut(s)	1097
BfuI	GTATCC	1 cut(s)	2249
BglII	AGATCT	1 cut(s)	2345
BmcAI	AGTACT	1 cut(s)	1664
Bme1390I	CCNGG	8 cut(s)	210, 504, 603, 815, 1160, 1565, 2215, 2463
Bme18I	GGWCC	5 cut(s)	282, 1210, 1246, 1304, 1689
BmeT110I	CYCGRG	1 cut(s)	2169
BmgT120I	GGNCC	6 cut(s)	282, 1210, 1246, 1304, 1689, 2404
BmiI	GGNNCC	5 cut(s)	481, 582, 600, 1421, 2167
BmrFI	CCNGG	8 cut(s)	210, 504, 603, 815, 1160, 1565, 2215, 2463
BmrI	ACTGGG	1 cut(s)	419
BmsI	GCATC	9 cut(s)	157, 643, 733, 1087, 1093, 1192, 1387, 1537, 2464
BmuI	ACTGGG	1 cut(s)	419
BpmI	CTGGAG	4 cut(s)	525, 1161, 1925, 2386
Bpu10I	CCTNAGC	1 cut(s)	43
BpuEI	CTTGAG	3 cut(s)	1391, 2031, 2215
BpuMI	CCSGG	2 cut(s)	815, 2463
BsaAI	YACGTR	2 cut(s)	266, 1367
BsaBI	GATNNNNATC	2 cut(s)	585, 1224
BsaJI	CCNNGG	8 cut(s)	209, 1159, 1265, 1274, 1669, 1960, 2157, 2214
BsaWI	WCCGGW	2 cut(s)	337, 2422
BsaXI	ACNNNNNCTCC	6 cut(s)	616, 646, 1331, 1361, 1813, 1843
Bsc4I	CCNNNNNNNGG	5 cut(s)	55, 215, 476, 2220, 2486
Bse118I	RCCGGY	1 cut(s)	2067
Bse1I	ACTGG	5 cut(s)	220, 425, 1660, 1908, 2369
Bse3DI	GCAATG	1 cut(s)	2193
Bse8I	GATNNNNATC	2 cut(s)	585, 1224
BseBI	CCWGG	6 cut(s)	210, 504, 603, 1160, 1565, 2215
BseDI	CCNNGG	8 cut(s)	209, 1159, 1265, 1274, 1669, 1960, 2157, 2214
BseGI	GGATG	8 cut(s)	172, 823, 904, 943, 1183, 1225, 1471, 2517
BseJI	GATNNNNATC	2 cut(s)	585, 1224
BseLI	CCNNNNNNNGG	5 cut(s)	55, 215, 476, 2220, 2486
BseMI	GCAATG	1 cut(s)	2193
BseMII	CTCAG	2 cut(s)	57, 2405
BseNI	ACTGG	5 cut(s)	220, 425, 1660, 1908, 2369
BseRI	GAGGAG	2 cut(s)	1821, 2034
BseXI	GCAGC	9 cut(s)	96, 231, 496, 870, 1282, 1322, 1618, 1867, 1987
BseYI	CCCAGC	1 cut(s)	1035
BshFI	GGCC	4 cut(s)	48, 146, 1807, 2406
BshNI	GGYRCC	1 cut(s)	2165
BsiHKCI	CYCGRG	1 cut(s)	2169
BsiSI	CCGG	7 cut(s)	338, 444, 814, 1808, 2068, 2423, 2462
BslFI	GGGAC	4 cut(s)	226, 475, 1176, 1496
BslI	CCNNNNNNNGG	5 cut(s)	55, 215, 476, 2220, 2486
BsmAI	GTCTC	1 cut(s)	2327
BsmFI	GGGAC	4 cut(s)	226, 475, 1176, 1496
BsmI	GAATGC	1 cut(s)	985
BsnI	GGCC	4 cut(s)	48, 146, 1807, 2406
BsoBI	CYCGRG	1 cut(s)	2169
Bsp1407I	TGTACA	1 cut(s)	1695
Bsp19I	CCATGG	2 cut(s)	1274, 2157
BspACI	CCGC	4 cut(s)	269, 630, 1442, 1608
BspANI	GGCC	4 cut(s)	48, 146, 1807, 2406
BspCNI	CTCAG	2 cut(s)	56, 2406
BspLI	GGNNCC	5 cut(s)	481, 582, 600, 1421, 2167
BspMI	ACCTGC	1 cut(s)	1097
BspT107I	GGYRCC	1 cut(s)	2165
BspTI	CTTAAG	1 cut(s)	851
BsrDI	GCAATG	1 cut(s)	2193
BsrFI	RCCGGY	1 cut(s)	2067
BsrGI	TGTACA	1 cut(s)	1695
BsrI	ACTGG	5 cut(s)	220, 425, 1660, 1908, 2369
BssAI	RCCGGY	1 cut(s)	2067
BssECI	CCNNGG	8 cut(s)	209, 1159, 1265, 1274, 1669, 1960, 2157, 2214
BssNAI	GTATAC	1 cut(s)	1601
BssT1I	CCWWGG	4 cut(s)	1265, 1274, 1669, 2157
Bst1107I	GTATAC	1 cut(s)	1601
Bst2UI	CCWGG	6 cut(s)	210, 504, 603, 1160, 1565, 2215
Bst4CI	ACNGT	6 cut(s)	253, 1087, 1210, 1250, 1292, 1700
Bst6I	CTCTTC	1 cut(s)	1839
BstAFI	CTTAAG	1 cut(s)	851
BstAPI	GCANNNNNTGC	3 cut(s)	70, 1285, 1628
BstAUI	TGTACA	1 cut(s)	1695
BstBAI	YACGTR	2 cut(s)	266, 1367
BstC8I	GCNNGC	1 cut(s)	2357
BstDEI	CTNAG	2 cut(s)	43, 2414
BstDSI	CCRYGG	2 cut(s)	1274, 2157
BstENI	CCTNNNNNAGG	1 cut(s)	2218
BstF5I	GGATG	8 cut(s)	172, 823, 904, 943, 1183, 1225, 1471, 2517
BstH2I	RGCGCY	1 cut(s)	2074
BstHHI	GCGC	2 cut(s)	346, 2073
BstMAI	GTCTC	1 cut(s)	2327
BstMWI	GCNNNNNNNGC	9 cut(s)	70, 109, 350, 499, 1164, 1276, 1285, 1628, 2192
BstNI	CCWGG	6 cut(s)	210, 504, 603, 1160, 1565, 2215
BstNSI	RCATGY	3 cut(s)	739, 838, 1607
BstSCI	CCNGG	8 cut(s)	208, 502, 601, 813, 1158, 1563, 2213, 2461
BstV1I	GCAGC	9 cut(s)	96, 231, 496, 870, 1282, 1322, 1618, 1867, 1987
BstX2I	RGATCY	6 cut(s)	580, 1150, 1419, 1444, 2132, 2345
BstXI	CCANNNNNNTGG	1 cut(s)	922
BstYI	RGATCY	6 cut(s)	580, 1150, 1419, 1444, 2132, 2345
BstZ17I	GTATAC	1 cut(s)	1601
BsuI	GTATCC	1 cut(s)	2249
BsuRI	GGCC	4 cut(s)	48, 146, 1807, 2406
BtgI	CCRYGG	2 cut(s)	1274, 2157
BtsCI	GGATG	8 cut(s)	172, 823, 904, 943, 1183, 1225, 1471, 2517
BtsIMutI	CAGTG	3 cut(s)	795, 1092, 1705
BveI	ACCTGC	1 cut(s)	1097
Cac8I	GCNNGC	1 cut(s)	2357
CfoI	GCGC	2 cut(s)	346, 2073
Cfr10I	RCCGGY	1 cut(s)	2067
Cfr13I	GGNCC	6 cut(s)	282, 1210, 1246, 1304, 1689, 2404
CpoI	CGGWCCG	1 cut(s)	1246
CseI	GACGC	1 cut(s)	1173
CsiI	ACCWGGT	1 cut(s)	1563
Csp6I	GTAC	4 cut(s)	606, 1663, 1696, 2166
CspI	CGGWCCG	1 cut(s)	1246
CviQI	GTAC	4 cut(s)	606, 1663, 1696, 2166
DdeI	CTNAG	2 cut(s)	43, 2414
EaeI	YGGCCR	1 cut(s)	1805
Eam1104I	CTCTTC	1 cut(s)	1839
EarI	CTCTTC	1 cut(s)	1839
EciI	GGCGGA	1 cut(s)	1457
Eco130I	CCWWGG	4 cut(s)	1265, 1274, 1669, 2157
Eco32I	GATATC	2 cut(s)	1321, 2420
Eco47I	GGWCC	5 cut(s)	282, 1210, 1246, 1304, 1689
Eco57I	CTGAAG	3 cut(s)	89, 119, 975
Eco72I	CACGTG	2 cut(s)	266, 1367
Eco88I	CYCGRG	1 cut(s)	2169
EcoNI	CCTNNNNNAGG	1 cut(s)	2218
EcoO109I	RGGNCCY	1 cut(s)	282
EcoRI	GAATTC	1 cut(s)	1842
EcoRII	CCWGG	6 cut(s)	208, 502, 601, 1158, 1563, 2213
EcoRV	GATATC	2 cut(s)	1321, 2420
EcoT14I	CCWWGG	4 cut(s)	1265, 1274, 1669, 2157
EcoT22I	ATGCAT	1 cut(s)	1402
ErhI	CCWWGG	4 cut(s)	1265, 1274, 1669, 2157
FalI	AAGNNNNNCTT	2 cut(s)	990, 1022
FaqI	GGGAC	4 cut(s)	226, 475, 1176, 1496
FauNDI	CATATG	1 cut(s)	1612
FbaI	TGATCA	1 cut(s)	586
FblI	GTMKAC	1 cut(s)	1600
FokI	GGATG	8 cut(s)	179, 830, 911, 950, 1170, 1232, 1478, 2504
FspBI	CTAG	4 cut(s)	6, 234, 1472, 1824
FspI	TGCGCA	1 cut(s)	345
GlaI	GCGC	2 cut(s)	345, 2072
GsaI	CCCAGC	1 cut(s)	1039
GsuI	CTGGAG	4 cut(s)	525, 1161, 1925, 2386
HaeII	RGCGCY	1 cut(s)	2074
HaeIII	GGCC	4 cut(s)	48, 146, 1807, 2406
HapII	CCGG	7 cut(s)	338, 444, 814, 1808, 2068, 2423, 2462
HgaI	GACGC	1 cut(s)	1173
HhaI	GCGC	2 cut(s)	346, 2073
Hin6I	GCGC	2 cut(s)	344, 2071
HinP1I	GCGC	2 cut(s)	344, 2071
HindIII	AAGCTT	4 cut(s)	101, 689, 1353, 1476
HinfI	GANTC	9 cut(s)	23, 181, 307, 472, 526, 942, 1372, 1508, 2320
HpaII	CCGG	7 cut(s)	338, 444, 814, 1808, 2068, 2423, 2462
HphI	GGTGA	3 cut(s)	854, 1997, 2461
Hpy166II	GTNNAC	5 cut(s)	398, 1213, 1601, 2110, 2237
Hpy188I	TCNGA	9 cut(s)	99, 471, 681, 1080, 1246, 1377, 2061, 2383, 2540
Hpy8I	GTNNAC	5 cut(s)	398, 1213, 1601, 2110, 2237
Hpy99I	CGWCG	1 cut(s)	765
HpyAV	CCTTC	7 cut(s)	164, 686, 863, 1295, 1805, 2156, 2395
HpyCH4III	ACNGT	6 cut(s)	253, 1087, 1210, 1250, 1292, 1700
HpyCH4IV	ACGT	3 cut(s)	265, 1366, 1485
HpyF10VI	GCNNNNNNNGC	9 cut(s)	70, 109, 350, 499, 1164, 1276, 1285, 1628, 2192
HpyF3I	CTNAG	2 cut(s)	43, 2414
HpySE526I	ACGT	3 cut(s)	265, 1366, 1485
HspAI	GCGC	2 cut(s)	344, 2071
KpnI	GGTACC	1 cut(s)	2169
Ksp22I	TGATCA	1 cut(s)	586
LmnI	GCTCC	4 cut(s)	319, 506, 816, 1339
Lsp1109I	GCAGC	9 cut(s)	96, 231, 496, 870, 1282, 1322, 1618, 1867, 1987
LweI	GCATC	9 cut(s)	157, 643, 733, 1087, 1093, 1192, 1387, 1537, 2464
MabI	ACCWGGT	1 cut(s)	1563
MaeI	CTAG	4 cut(s)	6, 234, 1472, 1824
MaeII	ACGT	3 cut(s)	265, 1366, 1485
MaeIII	GTNAC	3 cut(s)	247, 637, 1229
MfeI	CAATTG	1 cut(s)	1503
MflI	RGATCY	6 cut(s)	580, 1150, 1419, 1444, 2132, 2345
MlyI	GAGTC	2 cut(s)	175, 2329
MmeI	TCCRAC	1 cut(s)	929
Mph1103I	ATGCAT	1 cut(s)	1402
MroXI	GAANNNNTTC	1 cut(s)	1815
MseI	TTAA	5 cut(s)	558, 852, 1349, 1721, 1761
MslI	CAYNNNNRTG	2 cut(s)	1218, 1395
MspA1I	CMGCKG	2 cut(s)	109, 1022
MspCI	CTTAAG	1 cut(s)	851
MspI	CCGG	7 cut(s)	338, 444, 814, 1808, 2068, 2423, 2462
MspR9I	CCNGG	8 cut(s)	210, 504, 603, 815, 1160, 1565, 2215, 2463
MunI	CAATTG	1 cut(s)	1503
Mva1269I	GAATGC	1 cut(s)	985
MvaI	CCWGG	6 cut(s)	210, 504, 603, 1160, 1565, 2215
MwoI	GCNNNNNNNGC	9 cut(s)	70, 109, 350, 499, 1164, 1276, 1285, 1628, 2192
NciI	CCSGG	2 cut(s)	815, 2463
NcoI	CCATGG	2 cut(s)	1274, 2157
NdeI	CATATG	1 cut(s)	1612
NlaIV	GGNNCC	5 cut(s)	481, 582, 600, 1421, 2167
NmuCI	GTSAC	1 cut(s)	247
NsbI	TGCGCA	1 cut(s)	345
NsiI	ATGCAT	1 cut(s)	1402
NspI	RCATGY	3 cut(s)	739, 838, 1607
PciI	ACATGT	1 cut(s)	735
PctI	GAATGC	1 cut(s)	985
PdmI	GAANNNNTTC	1 cut(s)	1815
PfeI	GAWTC	7 cut(s)	23, 307, 472, 526, 942, 1372, 1508
PfoI	TCCNGGA	1 cut(s)	813
PleI	GAGTC	2 cut(s)	175, 2328
PmaCI	CACGTG	2 cut(s)	266, 1367
PmlI	CACGTG	2 cut(s)	266, 1367
PpsI	GAGTC	2 cut(s)	175, 2328
Ppu21I	YACGTR	2 cut(s)	266, 1367
PpuMI	RGGWCCY	1 cut(s)	282
PscI	ACATGT	1 cut(s)	735
Psp5II	RGGWCCY	1 cut(s)	282
Psp6I	CCWGG	6 cut(s)	208, 502, 601, 1158, 1563, 2213
PspCI	CACGTG	2 cut(s)	266, 1367
PspFI	CCCAGC	1 cut(s)	1035
PspGI	CCWGG	6 cut(s)	208, 502, 601, 1158, 1563, 2213
PspN4I	GGNNCC	5 cut(s)	481, 582, 600, 1421, 2167
PspPI	GGNCC	6 cut(s)	282, 1210, 1246, 1304, 1689, 2404
PspPPI	RGGWCCY	1 cut(s)	282
PsrI	GAACNNNNNNTAC	2 cut(s)	1051, 1083
PsuI	RGATCY	6 cut(s)	580, 1150, 1419, 1444, 2132, 2345
PvuII	CAGCTG	2 cut(s)	109, 1022
RsaI	GTAC	4 cut(s)	607, 1664, 1697, 2167
RsaNI	GTAC	4 cut(s)	606, 1663, 1696, 2166
RseI	CAYNNNNRTG	2 cut(s)	1218, 1395
Rsr2I	CGGWCCG	1 cut(s)	1246
RsrII	CGGWCCG	1 cut(s)	1246
SaqAI	TTAA	5 cut(s)	558, 852, 1349, 1721, 1761
Sau96I	GGNCC	6 cut(s)	282, 1210, 1246, 1304, 1689, 2404
ScaI	AGTACT	1 cut(s)	1664
SchI	GAGTC	2 cut(s)	175, 2329
ScrFI	CCNGG	8 cut(s)	210, 504, 603, 815, 1160, 1565, 2215, 2463
SexAI	ACCWGGT	1 cut(s)	1563
SfaNI	GCATC	9 cut(s)	157, 643, 733, 1087, 1093, 1192, 1387, 1537, 2464
SinI	GGWCC	5 cut(s)	282, 1210, 1246, 1304, 1689
SmiMI	CAYNNNNRTG	2 cut(s)	1218, 1395
SmlI	CTYRAG	4 cut(s)	851, 1406, 2046, 2230
SmoI	CTYRAG	4 cut(s)	851, 1406, 2046, 2230
SpeI	ACTAGT	1 cut(s)	233
SsiI	CCGC	4 cut(s)	269, 630, 1442, 1608
SspMI	CTAG	4 cut(s)	6, 234, 1472, 1824
StyD4I	CCNGG	8 cut(s)	208, 502, 601, 813, 1158, 1563, 2213, 2461
StyI	CCWWGG	4 cut(s)	1265, 1274, 1669, 2157
TaaI	ACNGT	6 cut(s)	253, 1087, 1210, 1250, 1292, 1700
TaiI	ACGT	3 cut(s)	268, 1369, 1488
TaqI	TCGA	3 cut(s)	524, 1015, 2325
TatI	WGTACW	2 cut(s)	1662, 1695
TauI	GCSGC	1 cut(s)	1610
TfiI	GAWTC	7 cut(s)	23, 307, 472, 526, 942, 1372, 1508
Tru1I	TTAA	5 cut(s)	558, 852, 1349, 1721, 1761
Tru9I	TTAA	5 cut(s)	558, 852, 1349, 1721, 1761
TscAI	CASTG	3 cut(s)	795, 1092, 1705
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	9 cut(s)	109, 219, 509, 883, 1270, 1310, 1631, 1855, 2000
Tsp45I	GTSAC	1 cut(s)	247
TspGWI	ACGGA	3 cut(s)	231, 950, 1616
TspRI	CASTG	3 cut(s)	795, 1092, 1705
Vha464I	CTTAAG	1 cut(s)	851
VpaK11BI	GGWCC	5 cut(s)	282, 1210, 1246, 1304, 1689
XagI	CCTNNNNNAGG	1 cut(s)	2218
XapI	RAATTY	2 cut(s)	1842, 1948
XbaI	TCTAGA	1 cut(s)	1471
XceI	RCATGY	3 cut(s)	739, 838, 1607
XcmI	CCANNNNNNNNNTGG	3 cut(s)	1272, 1667, 2211
XmiI	GTMKAC	1 cut(s)	1600
XmnI	GAANNNNTTC	1 cut(s)	1815
XspI	CTAG	4 cut(s)	6, 234, 1472, 1824
ZrmI	AGTACT	1 cut(s)	1664
Zsp2I	ATGCAT	1 cut(s)	1402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.