Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g24730 FvH4_2g24730 FvH4_2g24730 FvH4_5g06540 |
| malus_domestica | MD00G1056300.v1.1 MD05G1338500.v1.1 MD11G1297900.v1.1 |
| prunus_persica | Prupe.8G252300_v2.0.a1 |
| pyrus_communis | pycom02g21520 pycom03g21940 pycom03g21950 pycom05g12140 pycom11g26170 pycom16g06400 pycom16g24090 |
| rosa_chinensis | RchiOBHm_Chr6g0292551 |
| rosa_laevigata | RLG00000012010 |
| rosa_multiflora | Rmu_co8118566.1_g000001 Rmu_sc0000515.1_g000001 Rmu_sc0003486.1_g000005 Rmu_sc0004825.1_g000018 |
| rosa_roxburghii | Rroxscaffold_4G00318020 Rroxscaffold_7G00174940 |
| rosa_rugosa | Rorug06G0227900 |
| rosa_samantha | Rh5AG357200 Rh5DG382900 Rh6AG341000 Rh6AG341100 Rh6BG089400 Rh6BG348500 Rh6CG355300 Rh6CG355400 Rh6DG341100 Rh6DG341200 |
| rosa_wichuraiana | Rw6G029710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 225 |
| AgsI | TTSAA | 1 cut(s) | 101 |
| AjiI | CACGTC | 1 cut(s) | 59 |
| Alw26I | GTCTC | 2 cut(s) | 58, 60 |
| AoxI | GGCC | 1 cut(s) | 91 |
| AspLEI | GCGC | 1 cut(s) | 34 |
| AsuC2I | CCSGG | 1 cut(s) | 37 |
| BbsI | GAAGAC | 1 cut(s) | 67 |
| BcnI | CCSGG | 1 cut(s) | 37 |
| BcoDI | GTCTC | 2 cut(s) | 58, 60 |
| BfaI | CTAG | 2 cut(s) | 63, 119 |
| Bme1390I | CCNGG | 1 cut(s) | 37 |
| BmgBI | CACGTC | 1 cut(s) | 59 |
| BmrFI | CCNGG | 1 cut(s) | 37 |
| BpiI | GAAGAC | 1 cut(s) | 67 |
| BpuEI | CTTGAG | 1 cut(s) | 72 |
| BpuMI | CCSGG | 1 cut(s) | 37 |
| BsaJI | CCNNGG | 1 cut(s) | 35 |
| BseDI | CCNNGG | 1 cut(s) | 35 |
| BshFI | GGCC | 1 cut(s) | 93 |
| BsiSI | CCGG | 1 cut(s) | 37 |
| BsmAI | GTCTC | 2 cut(s) | 58, 60 |
| BsmBI | CGTCTC | 1 cut(s) | 58 |
| BsmI | GAATGC | 1 cut(s) | 24 |
| BsnI | GGCC | 1 cut(s) | 93 |
| Bsp143I | GATC | 1 cut(s) | 3 |
| BspANI | GGCC | 1 cut(s) | 93 |
| BssECI | CCNNGG | 1 cut(s) | 35 |
| BssMI | GATC | 1 cut(s) | 3 |
| BstDEI | CTNAG | 1 cut(s) | 165 |
| BstHHI | GCGC | 1 cut(s) | 34 |
| BstKTI | GATC | 1 cut(s) | 6 |
| BstMAI | GTCTC | 2 cut(s) | 58, 60 |
| BstMBI | GATC | 1 cut(s) | 3 |
| BstSCI | CCNGG | 1 cut(s) | 35 |
| BstV2I | GAAGAC | 1 cut(s) | 67 |
| BsuRI | GGCC | 1 cut(s) | 93 |
| BtrI | CACGTC | 1 cut(s) | 59 |
| CfoI | GCGC | 1 cut(s) | 34 |
| CseI | GACGC | 1 cut(s) | 137 |
| CviAII | CATG | 2 cut(s) | 29, 142 |
| CviJI | RGCY | 2 cut(s) | 93, 203 |
| CviKI_1 | RGCY | 2 cut(s) | 93, 203 |
| DdeI | CTNAG | 1 cut(s) | 165 |
| DpnI | GATC | 1 cut(s) | 5 |
| DpnII | GATC | 1 cut(s) | 3 |
| Eco57I | CTGAAG | 1 cut(s) | 225 |
| Esp3I | CGTCTC | 1 cut(s) | 58 |
| FaeI | CATG | 2 cut(s) | 32, 145 |
| FaiI | YATR | 7 cut(s) | 21, 30, 115, 143, 180, 217, 219 |
| FatI | CATG | 2 cut(s) | 28, 141 |
| FauNDI | CATATG | 1 cut(s) | 217 |
| FspBI | CTAG | 2 cut(s) | 63, 119 |
| GlaI | GCGC | 1 cut(s) | 33 |
| HaeIII | GGCC | 1 cut(s) | 93 |
| HapII | CCGG | 1 cut(s) | 37 |
| HgaI | GACGC | 1 cut(s) | 137 |
| HhaI | GCGC | 1 cut(s) | 34 |
| Hin1II | CATG | 2 cut(s) | 32, 145 |
| Hin6I | GCGC | 1 cut(s) | 32 |
| HinP1I | GCGC | 1 cut(s) | 32 |
| HinfI | GANTC | 1 cut(s) | 169 |
| HpaII | CCGG | 1 cut(s) | 37 |
| Hpy166II | GTNNAC | 1 cut(s) | 211 |
| Hpy188III | TCNNGA | 2 cut(s) | 7, 119 |
| Hpy8I | GTNNAC | 1 cut(s) | 211 |
| HpyCH4IV | ACGT | 2 cut(s) | 51, 58 |
| HpyF3I | CTNAG | 1 cut(s) | 165 |
| HpySE526I | ACGT | 2 cut(s) | 51, 58 |
| Hsp92II | CATG | 2 cut(s) | 32, 145 |
| HspAI | GCGC | 1 cut(s) | 32 |
| Kzo9I | GATC | 1 cut(s) | 3 |
| LpnPI | CCDG | 2 cut(s) | 50, 89 |
| MaeI | CTAG | 2 cut(s) | 63, 119 |
| MaeII | ACGT | 2 cut(s) | 51, 58 |
| MalI | GATC | 1 cut(s) | 5 |
| MboI | GATC | 1 cut(s) | 3 |
| MboII | GAAGA | 1 cut(s) | 67 |
| MluCI | AATT | 3 cut(s) | 16, 133, 154 |
| MnlI | CCTC | 3 cut(s) | 103, 171, 216 |
| MslI | CAYNNNNRTG | 1 cut(s) | 216 |
| MspI | CCGG | 1 cut(s) | 37 |
| MspR9I | CCNGG | 1 cut(s) | 37 |
| Mva1269I | GAATGC | 1 cut(s) | 24 |
| NciI | CCSGG | 1 cut(s) | 37 |
| NdeI | CATATG | 1 cut(s) | 217 |
| NdeII | GATC | 1 cut(s) | 3 |
| NlaIII | CATG | 2 cut(s) | 32, 145 |
| PctI | GAATGC | 1 cut(s) | 24 |
| PfeI | GAWTC | 1 cut(s) | 169 |
| PflFI | GACNNNGTC | 1 cut(s) | 71 |
| PsyI | GACNNNGTC | 1 cut(s) | 71 |
| RseI | CAYNNNNRTG | 1 cut(s) | 216 |
| Sau3AI | GATC | 1 cut(s) | 3 |
| ScrFI | CCNGG | 1 cut(s) | 37 |
| SetI | ASST | 4 cut(s) | 54, 61, 108, 227 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 216 |
| SmlI | CTYRAG | 1 cut(s) | 87 |
| SmoI | CTYRAG | 1 cut(s) | 87 |
| Sse9I | AATT | 3 cut(s) | 16, 133, 154 |
| SspI | AATATT | 1 cut(s) | 46 |
| SspMI | CTAG | 2 cut(s) | 63, 119 |
| StyD4I | CCNGG | 1 cut(s) | 35 |
| TaiI | ACGT | 2 cut(s) | 54, 61 |
| TasI | AATT | 3 cut(s) | 16, 133, 154 |
| TfiI | GAWTC | 1 cut(s) | 169 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| Tth111I | GACNNNGTC | 1 cut(s) | 71 |
| XbaI | TCTAGA | 1 cut(s) | 118 |
| XspI | CTAG | 2 cut(s) | 63, 119 |