Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003688

Physical Location & Seq

Genomic Coordinates Reverse (-)

43682001 .. 43687780

Gene Structure 5780 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00318020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGCCTCCCTTGAGGTTCTAGCAGATCAAAAGACTACTTTAGTACAAAGCACCAAGGAGCAGGACGAACAGTTAGGCAAAAATCGTGAAGGGGCAATGGGTCGAGCCCGGCTTCCACCTCCTCAACCCCCGCGCCGGTCAATGGGTCGCCGGAATCCTCTCCACGACTTCACCGAATCCAATCGGTCGACGTCAAAATCGAGACCAAAACCAAGGTGCTCCTTCGTATATGGGGCATCTATTATGCGAGATAGAGATTTGAATGAGTATAGTCCGTACGGGTCAAACACCGACAAGCATGTGTCTTGCGGCCATGAGTTATGTACAGCTGGTCCAAACTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005623 GO:0005886 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016020 GO:0016787 GO:0019538 GO:0030163 GO:0031224 GO:0031225 GO:0031226 GO:0043170 GO:0044238 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0070001 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

114

Amino Acids

12.72

Weight (kDa)

9.4

Isoelectric Point (pI)

54.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24730 FvH4_2g24730 FvH4_2g24730 FvH4_5g06540
malus_domestica	MD00G1056300.v1.1 MD05G1338500.v1.1 MD11G1297900.v1.1
prunus_persica	Prupe.8G252300_v2.0.a1
pyrus_communis	pycom02g21520 pycom03g21940 pycom03g21950 pycom05g12140 pycom11g26170 pycom16g06400 pycom16g24090
rosa_chinensis	RchiOBHm_Chr6g0292551
rosa_laevigata	RLG00000012010
rosa_multiflora	Rmu_co8118566.1_g000001 Rmu_sc0000515.1_g000001 Rmu_sc0003486.1_g000005 Rmu_sc0004825.1_g000018
rosa_roxburghii	Rroxscaffold_4G00318020 Rroxscaffold_7G00174940
rosa_rugosa	Rorug06G0227900
rosa_samantha	Rh5AG357200 Rh5DG382900 Rh6AG341000 Rh6AG341100 Rh6BG089400 Rh6BG348500 Rh6CG355300 Rh6CG355400 Rh6DG341100 Rh6DG341200
rosa_wichuraiana	Rw6G029710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	194
AccI	GTMKAC	1 cut(s)	188
AccII	CGCG	1 cut(s)	133
AciI	CCGC	2 cut(s)	131, 309
AcoI	YGGCCR	1 cut(s)	310
AcyI	GRCGYC	1 cut(s)	191
AfaI	GTAC	3 cut(s)	45, 278, 325
AfiI	CCNNNNNNNGG	2 cut(s)	135, 142
AgsI	TTSAA	1 cut(s)	262
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
Alw21I	GWGCWC	1 cut(s)	221
Alw26I	GTCTC	1 cut(s)	196
AoxI	GGCC	2 cut(s)	3, 310
AspLEI	GCGC	1 cut(s)	135
AspS9I	GGNCC	1 cut(s)	332
AsuC2I	CCSGG	1 cut(s)	109
AsuHPI	GGTGA	1 cut(s)	163
AvaII	GGWCC	1 cut(s)	332
BanII	GRGCYC	1 cut(s)	109
Bbv12I	GWGCWC	1 cut(s)	221
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	1 cut(s)	20
BisI	GCNGC	1 cut(s)	310
BlsI	GCNGC	1 cut(s)	311
Bme1390I	CCNGG	1 cut(s)	109
Bme18I	GGWCC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	332
BmrFI	CCNGG	1 cut(s)	109
BmsI	GCATC	1 cut(s)	245
BpuEI	CTTGAG	1 cut(s)	32
BpuMI	CCSGG	1 cut(s)	109
BsaHI	GRCGYC	1 cut(s)	191
BsaI	GGTCTC	1 cut(s)	196
BsaJI	CCNNGG	2 cut(s)	54, 212
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 142
Bse118I	RCCGGY	1 cut(s)	135
Bse3DI	GCAATG	1 cut(s)	102
BseDI	CCNNGG	2 cut(s)	54, 212
BseLI	CCNNNNNNNGG	2 cut(s)	135, 142
BseMI	GCAATG	1 cut(s)	102
BseRI	GAGGAG	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	133
Bsh1285I	CGRYCG	1 cut(s)	188
BshFI	GGCC	2 cut(s)	5, 312
BsiEI	CGRYCG	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	221
BsiSI	CCGG	3 cut(s)	109, 136, 151
BsiWI	CGTACG	1 cut(s)	276
BslI	CCNNNNNNNGG	2 cut(s)	135, 142
BsmAI	GTCTC	1 cut(s)	196
BsnI	GGCC	2 cut(s)	5, 312
Bso31I	GGTCTC	1 cut(s)	196
Bsp1286I	GDGCHC	2 cut(s)	109, 221
Bsp1407I	TGTACA	1 cut(s)	323
Bsp143I	GATC	1 cut(s)	25
BspACI	CCGC	2 cut(s)	131, 309
BspANI	GGCC	2 cut(s)	5, 312
BspFNI	CGCG	1 cut(s)	133
BspTNI	GGTCTC	1 cut(s)	196
BsrDI	GCAATG	1 cut(s)	102
BsrFI	RCCGGY	1 cut(s)	135
BsrGI	TGTACA	1 cut(s)	323
BssAI	RCCGGY	1 cut(s)	135
BssECI	CCNNGG	2 cut(s)	54, 212
BssMI	GATC	1 cut(s)	25
BssNI	GRCGYC	1 cut(s)	191
BssT1I	CCWWGG	2 cut(s)	54, 212
Bst4CI	ACNGT	1 cut(s)	72
BstACI	GRCGYC	1 cut(s)	191
BstAUI	TGTACA	1 cut(s)	323
BstFNI	CGCG	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	135
BstKTI	GATC	1 cut(s)	28
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	1 cut(s)	25
BstMCI	CGRYCG	1 cut(s)	188
BstNSI	RCATGY	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	107
BstUI	CGCG	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	5, 312
CfoI	GCGC	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	332
Csp6I	GTAC	3 cut(s)	44, 277, 324
CviAII	CATG	2 cut(s)	299, 314
CviJI	RGCY	5 cut(s)	5, 107, 112, 312, 329
CviKI_1	RGCY	5 cut(s)	5, 107, 112, 312, 329
CviQI	GTAC	3 cut(s)	44, 277, 324
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
EaeI	YGGCCR	1 cut(s)	310
Eco130I	CCWWGG	2 cut(s)	54, 212
Eco24I	GRGCYC	1 cut(s)	109
Eco31I	GGTCTC	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	332
EcoT14I	CCWWGG	2 cut(s)	54, 212
EcoT38I	GRGCYC	1 cut(s)	109
ErhI	CCWWGG	2 cut(s)	54, 212
FaeI	CATG	2 cut(s)	302, 317
FaiI	YATR	7 cut(s)	229, 231, 245, 270, 300, 315, 322
FatI	CATG	2 cut(s)	298, 313
FauI	CCCGC	1 cut(s)	138
FblI	GTMKAC	1 cut(s)	188
Fnu4HI	GCNGC	1 cut(s)	310
FriOI	GRGCYC	1 cut(s)	109
Fsp4HI	GCNGC	1 cut(s)	310
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	1 cut(s)	134
GluI	GCNGC	1 cut(s)	310
HaeIII	GGCC	2 cut(s)	5, 312
HapII	CCGG	3 cut(s)	109, 136, 151
HhaI	GCGC	1 cut(s)	135
Hin1I	GRCGYC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	302, 317
Hin6I	GCGC	1 cut(s)	133
HinP1I	GCGC	1 cut(s)	133
HincII	GTYRAC	1 cut(s)	189
HindII	GTYRAC	1 cut(s)	189
HinfI	GANTC	2 cut(s)	154, 176
HpaII	CCGG	3 cut(s)	109, 136, 151
HphI	GGTGA	1 cut(s)	163
Hpy166II	GTNNAC	1 cut(s)	189
Hpy188III	TCNNGA	2 cut(s)	86, 201
Hpy8I	GTNNAC	1 cut(s)	189
Hpy99I	CGWCG	1 cut(s)	193
HpyAV	CCTTC	2 cut(s)	83, 232
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4IV	ACGT	1 cut(s)	191
HpySE526I	ACGT	1 cut(s)	191
Hsp92I	GRCGYC	1 cut(s)	191
Hsp92II	CATG	2 cut(s)	302, 317
HspAI	GCGC	1 cut(s)	133
Kzo9I	GATC	1 cut(s)	25
LmnI	GCTCC	2 cut(s)	58, 224
LpnPI	CCDG	5 cut(s)	47, 122, 149, 164, 315
LweI	GCATC	1 cut(s)	245
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	1 cut(s)	191
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MhlI	GDGCHC	2 cut(s)	109, 221
MnlI	CCTC	5 cut(s)	7, 16, 129, 132, 168
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	3 cut(s)	109, 136, 151
MspR9I	CCNGG	1 cut(s)	109
MvnI	CGCG	1 cut(s)	133
NciI	CCSGG	1 cut(s)	109
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	2 cut(s)	302, 317
NspI	RCATGY	1 cut(s)	302
PcsI	WCGNNNNNNNCGW	2 cut(s)	171, 197
PfeI	GAWTC	2 cut(s)	154, 176
Pfl23II	CGTACG	1 cut(s)	276
PkrI	GCNGC	1 cut(s)	311
PspLI	CGTACG	1 cut(s)	276
PspPI	GGNCC	1 cut(s)	332
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	3 cut(s)	45, 278, 325
RsaNI	GTAC	3 cut(s)	44, 277, 324
SalI	GTCGAC	1 cut(s)	187
SatI	GCNGC	1 cut(s)	310
Sau3AI	GATC	1 cut(s)	25
Sau96I	GGNCC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	109
SduI	GDGCHC	2 cut(s)	109, 221
SetI	ASST	5 cut(s)	18, 121, 194, 218, 331
SfaNI	GCATC	1 cut(s)	245
SinI	GGWCC	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	11
SmoI	CTYRAG	1 cut(s)	11
SsiI	CCGC	2 cut(s)	131, 309
SspMI	CTAG	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	107
StyI	CCWWGG	2 cut(s)	54, 212
TaaI	ACNGT	1 cut(s)	72
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	3 cut(s)	103, 188, 200
TaqII	GACCGA	1 cut(s)	174
TatI	WGTACW	2 cut(s)	43, 323
TauI	GCSGC	1 cut(s)	312
TfiI	GAWTC	2 cut(s)	154, 176
TspGWI	ACGGA	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	332
XceI	RCATGY	1 cut(s)	302
XmiI	GTMKAC	1 cut(s)	188
XspI	CTAG	1 cut(s)	20
ZraI	GACGTC	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.