Rh5DG382900

Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003688
Physical Location & Seq
Reverse (-)
58630271 .. 58632207
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG382900.1

Sequence Viewer

Length: 369 bp
ATGGTTGTGCTAGTTTTGCAGAGGAGAAATGGAGAGCTCCGTGTTGGCATACACCGTGCGACCAAAAGACAAGACAATGCAACAACTTCACTCATTTGTGGCAATAGCATGCAGCATGGCATCCTTGCGAGTGCTTTCCATGCCATTTCTACTGGAACCATGTTTACCGTGTACTATCACCCTTGGACCAATCCTGTGCCATTTCCAAGGTTTGAGAATTGTAAAAAAGAAAAGGTAGAGACCCTTTATAAGCGAGAGGTAGGTGATGCCTTTATCAAGGTATTTAGTGAGCAAGCTTTTGAATCTGCCATCGCATTATGCAATTGGTTTGATATTGGTTGCGTGCTGCAACGGTGGAACAGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
AUX_IAA Auxin_resp B3

Protein Analysis

122

Amino Acids

13.97

Weight (kDa)

9.24

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 249
AfaI GTAC 1 cut(s) 173
AgsI TTSAA 1 cut(s) 302
AluBI AGCT 2 cut(s) 37, 296
AluI AGCT 2 cut(s) 37, 296
Alw21I GWGCWC 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 233
ApeKI GCWGC 2 cut(s) 112, 346
AspS9I GGNCC 1 cut(s) 186
AsuHPI GGTGA 2 cut(s) 170, 275
AvaII GGWCC 1 cut(s) 186
BanII GRGCYC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 39
BbvI GCAGC 2 cut(s) 124, 333
BccI CCATC 1 cut(s) 317
BcoDI GTCTC 1 cut(s) 233
BfaI CTAG 1 cut(s) 11
BisI GCNGC 2 cut(s) 113, 347
BlsI GCNGC 2 cut(s) 114, 348
Bme18I GGWCC 1 cut(s) 186
BmgT120I GGNCC 1 cut(s) 186
BmiI GGNNCC 1 cut(s) 157
BmsI GCATC 2 cut(s) 129, 256
BsaI GGTCTC 1 cut(s) 233
BsaJI CCNNGG 2 cut(s) 182, 206
Bse1I ACTGG 1 cut(s) 157
BseDI CCNNGG 2 cut(s) 182, 206
BseGI GGATG 1 cut(s) 120
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 1 cut(s) 37
BseXI GCAGC 2 cut(s) 124, 333
BsiHKAI GWGCWC 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 233
Bso31I GGTCTC 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 39
BspLI GGNNCC 1 cut(s) 157
BspTNI GGTCTC 1 cut(s) 233
BsrI ACTGG 1 cut(s) 157
BssECI CCNNGG 2 cut(s) 182, 206
BssT1I CCWWGG 2 cut(s) 182, 206
Bst4CI ACNGT 3 cut(s) 56, 169, 354
BstC8I GCNNGC 3 cut(s) 110, 294, 344
BstF5I GGATG 1 cut(s) 120
BstMAI GTCTC 1 cut(s) 233
BstMWI GCNNNNNNNGC 2 cut(s) 16, 140
BstNSI RCATGY 1 cut(s) 112
BstV1I GCAGC 2 cut(s) 124, 333
BtgZI GCGATG 1 cut(s) 295
BtsCI GGATG 1 cut(s) 120
Cac8I GCNNGC 3 cut(s) 110, 294, 344
Cfr13I GGNCC 1 cut(s) 186
Csp6I GTAC 1 cut(s) 172
CviAII CATG 4 cut(s) 109, 116, 140, 160
CviJI RGCY 2 cut(s) 37, 296
CviKI_1 RGCY 2 cut(s) 37, 296
CviQI GTAC 1 cut(s) 172
Ecl136II GAGCTC 1 cut(s) 37
Eco130I CCWWGG 2 cut(s) 182, 206
Eco24I GRGCYC 1 cut(s) 39
Eco31I GGTCTC 1 cut(s) 233
Eco47I GGWCC 1 cut(s) 186
Eco53kI GAGCTC 1 cut(s) 37
EcoICRI GAGCTC 1 cut(s) 37
EcoT14I CCWWGG 2 cut(s) 182, 206
EcoT38I GRGCYC 1 cut(s) 39
ErhI CCWWGG 2 cut(s) 182, 206
FaeI CATG 4 cut(s) 112, 119, 143, 163
FaiI YATR 7 cut(s) 50, 110, 117, 141, 161, 249, 319
FatI CATG 4 cut(s) 108, 115, 139, 159
Fnu4HI GCNGC 2 cut(s) 113, 347
FokI GGATG 1 cut(s) 107
FriOI GRGCYC 1 cut(s) 39
Fsp4HI GCNGC 2 cut(s) 113, 347
FspBI CTAG 1 cut(s) 11
GluI GCNGC 2 cut(s) 113, 347
Hin1II CATG 4 cut(s) 112, 119, 143, 163
HindIII AAGCTT 1 cut(s) 294
HinfI GANTC 1 cut(s) 302
HphI GGTGA 2 cut(s) 170, 275
Hpy166II GTNNAC 2 cut(s) 165, 172
Hpy8I GTNNAC 2 cut(s) 165, 172
HpyCH4III ACNGT 3 cut(s) 56, 169, 354
HpyCH4V TGCA 5 cut(s) 19, 80, 112, 321, 349
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 140
Hsp92II CATG 4 cut(s) 112, 119, 143, 163
LmnI GCTCC 1 cut(s) 42
LpnPI CCDG 2 cut(s) 138, 207
Lsp1109I GCAGC 2 cut(s) 124, 333
LweI GCATC 2 cut(s) 129, 256
MaeI CTAG 1 cut(s) 11
MfeI CAATTG 1 cut(s) 322
MhlI GDGCHC 1 cut(s) 39
MluCI AATT 2 cut(s) 217, 322
MnlI CCTC 2 cut(s) 15, 250
MunI CAATTG 1 cut(s) 322
MwoI GCNNNNNNNGC 2 cut(s) 16, 140
NlaIII CATG 4 cut(s) 112, 119, 143, 163
NlaIV GGNNCC 1 cut(s) 157
NspI RCATGY 1 cut(s) 112
PaeI GCATGC 1 cut(s) 112
PfeI GAWTC 1 cut(s) 302
PkrI GCNGC 2 cut(s) 114, 348
PsiI TTATAA 1 cut(s) 249
Psp124BI GAGCTC 1 cut(s) 39
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 1 cut(s) 186
PsrI GAACNNNNNNTAC 2 cut(s) 148, 180
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
SacI GAGCTC 1 cut(s) 39
SatI GCNGC 2 cut(s) 113, 347
Sau96I GGNCC 1 cut(s) 186
SduI GDGCHC 1 cut(s) 39
SetI ASST 7 cut(s) 39, 212, 237, 261, 265, 282, 298
SfaNI GCATC 2 cut(s) 129, 256
SinI GGWCC 1 cut(s) 186
SphI GCATGC 1 cut(s) 112
Sse9I AATT 2 cut(s) 217, 322
SspMI CTAG 1 cut(s) 11
SstI GAGCTC 1 cut(s) 39
StyI CCWWGG 2 cut(s) 182, 206
TaaI ACNGT 3 cut(s) 56, 169, 354
TasI AATT 2 cut(s) 217, 322
TatI WGTACW 1 cut(s) 171
TfiI GAWTC 1 cut(s) 302
TseI GCWGC 2 cut(s) 112, 346
TspGWI ACGGA 1 cut(s) 29
VpaK11BI GGWCC 1 cut(s) 186
XceI RCATGY 1 cut(s) 112
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.