Rh6CG355300

Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
54369276 .. 54371269
1994 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG355300.1

Sequence Viewer

Length: 1173 bp
ATGAAATCACCCAAAGATGAATATTCTGTTGGGATGAGATTCAGAATGCGGTTTGAAGCTGAAGAATGTGCAGAGAAGAGATGTGAAGGTACCATAATAGATATTAAAGATAAGGATCCTGTTAGGTGGCCCAGTTCTGAATGGGGGTGTCTGAAGGTGCAATGGGATACCACATCAGCTACGCTCTTGCATTCTGAAAGGCTTTCTCCTTGGAACATTGAGCCTGCAGAATCCACCAAGACGAAGAGGACTTCTTTCCCTGTCCCACCTCATAAGAGACCACGTATACCTGATCTATCATTACCTGTGTTTTCTGGGTTGGCCAGGAATGGCCCATTTCCATTAATAATGCCTCAAAGACGAGAAAAGGTCTTTCAAGGTCAAGAAATAAGCGAAACACATGCTAATGAACTAGGTGCACCAATGTATGATCCGCTACACCAAAGTCCTAGCAGTTCAATAGCATTTTCCAGTGAAAATATGCTGACTCCAGGCCACATTAACCAATGGCCATCACAGTTGACTACTTTTGGGGTCGTTGACAGTGTTCCATTTAGCAGAAGCATGTCGGTTCCAAATATCAACTCCTCTGGATCCCAGGAATTAAGCGCCTCTAAACTGAGGAGTGAGACTCAAGGGCCATTTGTTCCATCAAATACCCTCATGCTTTTTGGAGTCAATTTAGATAACAGTCACTCGGAGCTCCCTTCACCACAAGTTGCCAATTCTAGTGGACATTTAAGTCCTTGTTCTATTCCTCCAATTTCTCAGTCAAGTGTTTCTGAAACTGTCCAACTTTCAGAGACATCTAAGAGTATTTCTTGTGTTCTTTCTGAGACACAATGCAAGAAATGTTGTTCTGTCAGCAACAGGAGTTGCATAAAGGTGCTCAAGTATGGAGCAGCCCTTGGAAGATCAGTGGACCTCACACGCTTTGATGGGTATGGTGAGCTTATTTCTGAGCTTGACCAGATGTTCGATTTTGAAGGAAGGTTGATCGATGGAAGTAGTGGATGGCAGGTAACCTACATGGACGATGAAGGAGACATGATGCTGATAGGAGATTATCTGTGGCATGAATTCCTGTCAATGGTGCGAAAAATGTTCATCAGTCCAAAGGATCAAGAAATCGATAGTCTGAATCCAGGCTCTCCAAATGCAACATCCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

390

Amino Acids

43.3

Weight (kDa)

5.39

Isoelectric Point (pI)

67.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARF_AD PF06507 3 - 76 7.2e-27 Auxin response factor ancillary domain
AUX_IAA PF02309 331 - 370 7.2e-06 AUX/IAA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 741
Acc36I ACCTGC 1 cut(s) 1009
Acc65I GGTACC 1 cut(s) 89
AccB1I GGYRCC 1 cut(s) 89
AccI GTMKAC 1 cut(s) 286
AciI CCGC 2 cut(s) 49, 434
AclWI GGATC 6 cut(s) 110, 123, 425, 588, 601, 1128
AcoI YGGCCR 2 cut(s) 321, 509
AcsI RAATTY 1 cut(s) 1079
AcuI CTGAAG 2 cut(s) 81, 173
AfaI GTAC 1 cut(s) 91
AfiI CCNNNNNNNGG 1 cut(s) 1090
AgsI TTSAA 4 cut(s) 56, 377, 459, 986
AjnI CCWGG 4 cut(s) 323, 490, 597, 1144
AjuI GAANNNNNNNTTGG 2 cut(s) 12, 44
AluBI AGCT 5 cut(s) 59, 179, 703, 952, 964
AluI AGCT 5 cut(s) 59, 179, 703, 952, 964
Alw21I GWGCWC 3 cut(s) 421, 705, 891
Alw26I GTCTC 5 cut(s) 271, 623, 797, 830, 1038
Alw44I GTGCAC 1 cut(s) 417
AlwI GGATC 6 cut(s) 110, 123, 425, 588, 601, 1128
AoxI GGCC 6 cut(s) 128, 321, 331, 493, 509, 638
ApaLI GTGCAC 1 cut(s) 417
ApeKI GCWGC 1 cut(s) 902
ApoI RAATTY 1 cut(s) 1079
ArsI GACNNNNNNTTYG 2 cut(s) 959, 991
AseI ATTAAT 1 cut(s) 344
Asp718I GGTACC 1 cut(s) 89
AspLEI GCGC 1 cut(s) 611
AspS9I GGNCC 4 cut(s) 129, 332, 638, 922
AsuHPI GGTGA 2 cut(s) 702, 959
AvaII GGWCC 1 cut(s) 922
BaeGI GKGCMC 1 cut(s) 421
BalI TGGCCA 2 cut(s) 323, 511
BamHI GGATCC 2 cut(s) 115, 593
BanI GGYRCC 1 cut(s) 89
BanII GRGCYC 1 cut(s) 705
Bbv12I GWGCWC 3 cut(s) 421, 705, 891
BbvI GCAGC 1 cut(s) 914
BccI CCATC 5 cut(s) 520, 658, 932, 995, 1008
BcgI CGANNNNNNTGC 2 cut(s) 383, 417
BciT130I CCWGG 4 cut(s) 325, 492, 599, 1146
BciVI GTATCC 1 cut(s) 160
BcoDI GTCTC 5 cut(s) 271, 623, 797, 830, 1038
BfaI CTAG 3 cut(s) 413, 450, 729
BfmI CTRYAG 1 cut(s) 225
BfoI RGCGCY 1 cut(s) 612
BfuAI ACCTGC 1 cut(s) 1009
BfuI GTATCC 1 cut(s) 160
BisI GCNGC 1 cut(s) 903
BlsI GCNGC 1 cut(s) 904
Bme1390I CCNGG 4 cut(s) 325, 492, 599, 1146
Bme18I GGWCC 1 cut(s) 922
BmgT120I GGNCC 4 cut(s) 129, 332, 638, 922
BmiI GGNNCC 4 cut(s) 91, 117, 573, 595
BmrFI CCNGG 4 cut(s) 325, 492, 599, 1146
BmrI ACTGGG 1 cut(s) 126
BmsI GCATC 1 cut(s) 1041
BmuI ACTGGG 1 cut(s) 126
BplI GAGNNNNNCTC 2 cut(s) 616, 648
BpmI CTGGAG 1 cut(s) 474
BpuEI CTTGAG 2 cut(s) 618, 875
Bsa29I ATCGAT 2 cut(s) 999, 1131
BsaAI YACGTR 1 cut(s) 284
BsaBI GATNNNNATC 1 cut(s) 114
BsaI GGTCTC 1 cut(s) 271
BsaJI CCNNGG 3 cut(s) 209, 597, 907
Bsc4I CCNNNNNNNGG 1 cut(s) 1090
Bse1I ACTGG 2 cut(s) 132, 471
Bse3DI GCAATG 1 cut(s) 167
Bse8I GATNNNNATC 1 cut(s) 114
BseBI CCWGG 4 cut(s) 325, 492, 599, 1146
BseCI ATCGAT 2 cut(s) 999, 1131
BseDI CCNNGG 3 cut(s) 209, 597, 907
BseGI GGATG 3 cut(s) 39, 1019, 1163
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 1 cut(s) 1090
BseMI GCAATG 1 cut(s) 167
BseMII CTCAG 4 cut(s) 611, 782, 825, 951
BseNI ACTGG 2 cut(s) 132, 471
BseRI GAGGAG 2 cut(s) 577, 637
BseSI GKGCMC 1 cut(s) 421
BseXI GCAGC 1 cut(s) 914
BsgI GTGCAG 1 cut(s) 90
BshFI GGCC 6 cut(s) 130, 323, 333, 495, 511, 640
BshNI GGYRCC 1 cut(s) 89
BshVI ATCGAT 2 cut(s) 999, 1131
BsiHKAI GWGCWC 3 cut(s) 421, 705, 891
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 1 cut(s) 1090
BsmAI GTCTC 5 cut(s) 271, 623, 797, 830, 1038
BsmFI GGGAC 1 cut(s) 248
BsmI GAATGC 2 cut(s) 51, 190
BsnI GGCC 6 cut(s) 130, 323, 333, 495, 511, 640
Bso31I GGTCTC 1 cut(s) 271
Bsp1286I GDGCHC 3 cut(s) 421, 705, 891
Bsp143I GATC 7 cut(s) 115, 292, 430, 593, 914, 996, 1120
BspACI CCGC 2 cut(s) 49, 434
BspANI GGCC 6 cut(s) 130, 323, 333, 495, 511, 640
BspCNI CTCAG 4 cut(s) 612, 781, 826, 952
BspDI ATCGAT 2 cut(s) 999, 1131
BspLI GGNNCC 4 cut(s) 91, 117, 573, 595
BspMAI CTGCAG 1 cut(s) 229
BspMI ACCTGC 1 cut(s) 1009
BspPI GGATC 6 cut(s) 110, 123, 425, 588, 601, 1128
BspT107I GGYRCC 1 cut(s) 89
BspTNI GGTCTC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 167
BsrI ACTGG 2 cut(s) 132, 471
BssECI CCNNGG 3 cut(s) 209, 597, 907
BssMI GATC 7 cut(s) 115, 292, 430, 593, 914, 996, 1120
BssNAI GTATAC 1 cut(s) 287
BssT1I CCWWGG 2 cut(s) 209, 907
Bst1107I GTATAC 1 cut(s) 287
Bst2UI CCWGG 4 cut(s) 325, 492, 599, 1146
Bst4CI ACNGT 4 cut(s) 519, 545, 692, 790
Bst6I CTCTTC 2 cut(s) 71, 239
BstBAI YACGTR 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 5 cut(s) 620, 768, 810, 834, 960
BstEII GGTNACC 1 cut(s) 1021
BstF5I GGATG 3 cut(s) 39, 1019, 1163
BstH2I RGCGCY 1 cut(s) 612
BstHHI GCGC 1 cut(s) 611
BstKTI GATC 7 cut(s) 118, 295, 433, 596, 917, 999, 1123
BstMAI GTCTC 5 cut(s) 271, 623, 797, 830, 1038
BstMBI GATC 7 cut(s) 115, 292, 430, 593, 914, 996, 1120
BstNI CCWGG 4 cut(s) 325, 492, 599, 1146
BstNSI RCATGY 2 cut(s) 404, 568
BstPI GGTNACC 1 cut(s) 1021
BstSCI CCNGG 4 cut(s) 323, 490, 597, 1144
BstSFI CTRYAG 1 cut(s) 225
BstSLI GKGCMC 1 cut(s) 421
BstV1I GCAGC 1 cut(s) 914
BstX2I RGATCY 2 cut(s) 115, 593
BstYI RGATCY 2 cut(s) 115, 593
BstZ17I GTATAC 1 cut(s) 287
Bsu15I ATCGAT 2 cut(s) 999, 1131
BsuI GTATCC 1 cut(s) 160
BsuRI GGCC 6 cut(s) 130, 323, 333, 495, 511, 640
BsuTUI ATCGAT 2 cut(s) 999, 1131
BtsCI GGATG 3 cut(s) 39, 1019, 1163
BtsIMutI CAGTG 3 cut(s) 478, 550, 924
BveI ACCTGC 1 cut(s) 1009
Cac8I GCNNGC 1 cut(s) 225
CfoI GCGC 1 cut(s) 611
Cfr13I GGNCC 4 cut(s) 129, 332, 638, 922
ClaI ATCGAT 2 cut(s) 999, 1131
Csp6I GTAC 1 cut(s) 90
CspCI CAANNNNNGTGG 2 cut(s) 712, 747
CviAII CATG 6 cut(s) 401, 565, 664, 1030, 1048, 1076
CviQI GTAC 1 cut(s) 90
DdeI CTNAG 5 cut(s) 620, 768, 810, 834, 960
DpnI GATC 7 cut(s) 117, 294, 432, 595, 916, 998, 1122
DpnII GATC 7 cut(s) 115, 292, 430, 593, 914, 996, 1120
DrdI GACNNNNNNGTC 1 cut(s) 741
DseDI GACNNNNNNGTC 1 cut(s) 741
EaeI YGGCCR 2 cut(s) 321, 509
Eam1104I CTCTTC 2 cut(s) 71, 239
EarI CTCTTC 2 cut(s) 71, 239
Ecl136II GAGCTC 1 cut(s) 703
Eco130I CCWWGG 2 cut(s) 209, 907
Eco24I GRGCYC 1 cut(s) 705
Eco31I GGTCTC 1 cut(s) 271
Eco47I GGWCC 1 cut(s) 922
Eco53kI GAGCTC 1 cut(s) 703
Eco57I CTGAAG 2 cut(s) 81, 173
Eco91I GGTNACC 1 cut(s) 1021
EcoICRI GAGCTC 1 cut(s) 703
EcoO65I GGTNACC 1 cut(s) 1021
EcoRI GAATTC 1 cut(s) 1079
EcoRII CCWGG 4 cut(s) 323, 490, 597, 1144
EcoT14I CCWWGG 2 cut(s) 209, 907
EcoT38I GRGCYC 1 cut(s) 705
ErhI CCWWGG 2 cut(s) 209, 907
FaeI CATG 6 cut(s) 404, 568, 667, 1033, 1051, 1079
FaqI GGGAC 1 cut(s) 248
FatI CATG 6 cut(s) 400, 564, 663, 1029, 1047, 1075
FblI GTMKAC 1 cut(s) 286
Fnu4HI GCNGC 1 cut(s) 903
FokI GGATG 3 cut(s) 46, 1026, 1150
FriOI GRGCYC 1 cut(s) 705
Fsp4HI GCNGC 1 cut(s) 903
FspBI CTAG 3 cut(s) 413, 450, 729
GlaI GCGC 1 cut(s) 610
GluI GCNGC 1 cut(s) 903
GsuI CTGGAG 1 cut(s) 474
HaeII RGCGCY 1 cut(s) 612
HaeIII GGCC 6 cut(s) 130, 323, 333, 495, 511, 640
HhaI GCGC 1 cut(s) 611
Hin1II CATG 6 cut(s) 404, 568, 667, 1033, 1051, 1079
Hin6I GCGC 1 cut(s) 609
HinP1I GCGC 1 cut(s) 609
HincII GTYRAC 2 cut(s) 522, 541
HindII GTYRAC 2 cut(s) 522, 541
HinfI GANTC 6 cut(s) 39, 230, 487, 631, 675, 1141
HphI GGTGA 2 cut(s) 702, 959
Hpy166II GTNNAC 6 cut(s) 287, 419, 522, 541, 734, 922
Hpy188III TCNNGA 3 cut(s) 383, 591, 1124
Hpy8I GTNNAC 6 cut(s) 287, 419, 522, 541, 734, 922
HpyAV CCTTC 6 cut(s) 80, 148, 717, 980, 984, 1034
HpyCH4III ACNGT 4 cut(s) 519, 545, 692, 790
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 8 cut(s) 71, 160, 190, 227, 419, 846, 879, 1160
HpyF3I CTNAG 5 cut(s) 620, 768, 810, 834, 960
HpySE526I ACGT 1 cut(s) 283
Hsp92II CATG 6 cut(s) 404, 568, 667, 1033, 1051, 1079
HspAI GCGC 1 cut(s) 609
KpnI GGTACC 1 cut(s) 93
Kzo9I GATC 7 cut(s) 115, 292, 430, 593, 914, 996, 1120
LmnI GCTCC 3 cut(s) 700, 708, 899
Lsp1109I GCAGC 1 cut(s) 914
LweI GCATC 1 cut(s) 1041
MaeI CTAG 3 cut(s) 413, 450, 729
MaeII ACGT 1 cut(s) 283
MaeIII GTNAC 2 cut(s) 692, 1021
MalI GATC 7 cut(s) 117, 294, 432, 595, 916, 998, 1122
MboI GATC 7 cut(s) 115, 292, 430, 593, 914, 996, 1120
MboII GAAGA 4 cut(s) 74, 88, 256, 924
MflI RGATCY 2 cut(s) 115, 593
MhlI GDGCHC 3 cut(s) 421, 705, 891
MlsI TGGCCA 2 cut(s) 323, 511
MluCI AATT 5 cut(s) 602, 679, 724, 762, 1079
MluNI TGGCCA 2 cut(s) 323, 511
MlyI GAGTC 3 cut(s) 481, 625, 684
MmeI TCCRAC 1 cut(s) 817
MnlI CCTC 9 cut(s) 240, 279, 363, 598, 615, 622, 671, 768, 935
Mox20I TGGCCA 2 cut(s) 323, 511
MscI TGGCCA 2 cut(s) 323, 511
MseI TTAA 5 cut(s) 105, 344, 501, 605, 740
MslI CAYNNNNRTG 2 cut(s) 405, 884
Msp20I TGGCCA 2 cut(s) 323, 511
MspR9I CCNGG 4 cut(s) 325, 492, 599, 1146
Mva1269I GAATGC 2 cut(s) 51, 190
MvaI CCWGG 4 cut(s) 325, 492, 599, 1146
NdeII GATC 7 cut(s) 115, 292, 430, 593, 914, 996, 1120
NlaIII CATG 6 cut(s) 404, 568, 667, 1033, 1051, 1079
NlaIV GGNNCC 4 cut(s) 91, 117, 573, 595
NmuCI GTSAC 1 cut(s) 692
NspI RCATGY 2 cut(s) 404, 568
PctI GAATGC 2 cut(s) 51, 190
PfeI GAWTC 3 cut(s) 39, 230, 1141
PkrI GCNGC 1 cut(s) 904
PleI GAGTC 3 cut(s) 481, 625, 683
PpsI GAGTC 3 cut(s) 481, 625, 683
Ppu21I YACGTR 1 cut(s) 284
PshBI ATTAAT 1 cut(s) 344
Psp124BI GAGCTC 1 cut(s) 705
Psp6I CCWGG 4 cut(s) 323, 490, 597, 1144
PspEI GGTNACC 1 cut(s) 1021
PspGI CCWGG 4 cut(s) 323, 490, 597, 1144
PspN4I GGNNCC 4 cut(s) 91, 117, 573, 595
PspPI GGNCC 4 cut(s) 129, 332, 638, 922
PstI CTGCAG 1 cut(s) 229
PsuI RGATCY 2 cut(s) 115, 593
RsaI GTAC 1 cut(s) 91
RsaNI GTAC 1 cut(s) 90
RseI CAYNNNNRTG 2 cut(s) 405, 884
SacI GAGCTC 1 cut(s) 705
SaqAI TTAA 5 cut(s) 105, 344, 501, 605, 740
SatI GCNGC 1 cut(s) 903
Sau3AI GATC 7 cut(s) 115, 292, 430, 593, 914, 996, 1120
Sau96I GGNCC 4 cut(s) 129, 332, 638, 922
SchI GAGTC 3 cut(s) 481, 625, 684
ScrFI CCNGG 4 cut(s) 325, 492, 599, 1146
SduI GDGCHC 3 cut(s) 421, 705, 891
SfaNI GCATC 1 cut(s) 1041
SfcI CTRYAG 1 cut(s) 225
SinI GGWCC 1 cut(s) 922
SmiMI CAYNNNNRTG 2 cut(s) 405, 884
SmlI CTYRAG 2 cut(s) 633, 890
SmoI CTYRAG 2 cut(s) 633, 890
Sse9I AATT 5 cut(s) 602, 679, 724, 762, 1079
SsiI CCGC 2 cut(s) 49, 434
SspI AATATT 1 cut(s) 23
SspMI CTAG 3 cut(s) 413, 450, 729
SstI GAGCTC 1 cut(s) 705
StyD4I CCNGG 4 cut(s) 323, 490, 597, 1144
StyI CCWWGG 2 cut(s) 209, 907
TaaI ACNGT 4 cut(s) 519, 545, 692, 790
TaiI ACGT 1 cut(s) 286
TaqI TCGA 3 cut(s) 978, 999, 1131
TasI AATT 5 cut(s) 602, 679, 724, 762, 1079
TfiI GAWTC 3 cut(s) 39, 230, 1141
Tru1I TTAA 5 cut(s) 105, 344, 501, 605, 740
Tru9I TTAA 5 cut(s) 105, 344, 501, 605, 740
TscAI CASTG 3 cut(s) 478, 550, 924
TseFI GTSAC 1 cut(s) 692
TseI GCWGC 1 cut(s) 902
Tsp45I GTSAC 1 cut(s) 692
TspDTI ATGAA 6 cut(s) 17, 33, 423, 1053, 1092, 1096
TspRI CASTG 3 cut(s) 478, 550, 924
VneI GTGCAC 1 cut(s) 417
VpaK11BI GGWCC 1 cut(s) 922
VspI ATTAAT 1 cut(s) 344
XapI RAATTY 1 cut(s) 1079
XceI RCATGY 2 cut(s) 404, 568
XmiI GTMKAC 1 cut(s) 286
XspI CTAG 3 cut(s) 413, 450, 729
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.