Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g24730 FvH4_2g24730 FvH4_2g24730 FvH4_5g06540 |
| malus_domestica | MD00G1056300.v1.1 MD05G1338500.v1.1 MD11G1297900.v1.1 |
| prunus_persica | Prupe.8G252300_v2.0.a1 |
| pyrus_communis | pycom02g21520 pycom03g21940 pycom03g21950 pycom05g12140 pycom11g26170 pycom16g06400 pycom16g24090 |
| rosa_chinensis | RchiOBHm_Chr6g0292551 |
| rosa_laevigata | RLG00000012010 |
| rosa_multiflora | Rmu_co8118566.1_g000001 Rmu_sc0000515.1_g000001 Rmu_sc0003486.1_g000005 Rmu_sc0004825.1_g000018 |
| rosa_roxburghii | Rroxscaffold_4G00318020 Rroxscaffold_7G00174940 |
| rosa_rugosa | Rorug06G0227900 |
| rosa_samantha | Rh5AG357200 Rh5DG382900 Rh6AG341000 Rh6AG341100 Rh6BG089400 Rh6BG348500 Rh6CG355300 Rh6CG355400 Rh6DG341100 Rh6DG341200 |
| rosa_wichuraiana | Rw6G029710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 249 |
| AccB1I | GGYRCC | 2 cut(s) | 107, 359 |
| AciI | CCGC | 2 cut(s) | 38, 382 |
| AcoI | YGGCCR | 1 cut(s) | 304 |
| AfaI | GTAC | 5 cut(s) | 45, 121, 136, 255, 377 |
| AflIII | ACRYGT | 1 cut(s) | 24 |
| AgsI | TTSAA | 3 cut(s) | 409, 461, 472 |
| Alw26I | GTCTC | 2 cut(s) | 33, 231 |
| AoxI | GGCC | 1 cut(s) | 304 |
| ApeKI | GCWGC | 1 cut(s) | 146 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 440, 472 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 209 |
| BalI | TGGCCA | 1 cut(s) | 306 |
| BanI | GGYRCC | 2 cut(s) | 107, 359 |
| BbvI | GCAGC | 1 cut(s) | 133 |
| BceAI | ACGGC | 2 cut(s) | 243, 332 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 49, 83 |
| BclI | TGATCA | 1 cut(s) | 421 |
| BcoDI | GTCTC | 2 cut(s) | 33, 231 |
| BfuAI | ACCTGC | 1 cut(s) | 249 |
| BglII | AGATCT | 1 cut(s) | 49 |
| BisI | GCNGC | 1 cut(s) | 147 |
| BlsI | GCNGC | 1 cut(s) | 148 |
| BmiI | GGNNCC | 2 cut(s) | 109, 361 |
| BmsI | GCATC | 2 cut(s) | 160, 293 |
| BsaAI | YACGTR | 2 cut(s) | 119, 199 |
| BsaI | GGTCTC | 1 cut(s) | 231 |
| BsaJI | CCNNGG | 1 cut(s) | 386 |
| Bse118I | RCCGGY | 1 cut(s) | 40 |
| Bse1I | ACTGG | 2 cut(s) | 192, 361 |
| BseDI | CCNNGG | 1 cut(s) | 386 |
| BseGI | GGATG | 1 cut(s) | 175 |
| BseMII | CTCAG | 1 cut(s) | 44 |
| BseNI | ACTGG | 2 cut(s) | 192, 361 |
| BseXI | GCAGC | 1 cut(s) | 133 |
| BseYI | CCCAGC | 1 cut(s) | 164 |
| BshFI | GGCC | 1 cut(s) | 306 |
| BshNI | GGYRCC | 2 cut(s) | 107, 359 |
| BsiSI | CCGG | 1 cut(s) | 41 |
| BsiWI | CGTACG | 1 cut(s) | 253 |
| BsmAI | GTCTC | 2 cut(s) | 33, 231 |
| BsnI | GGCC | 1 cut(s) | 306 |
| Bso31I | GGTCTC | 1 cut(s) | 231 |
| Bsp143I | GATC | 2 cut(s) | 49, 421 |
| Bsp19I | CCATGG | 1 cut(s) | 386 |
| BspACI | CCGC | 2 cut(s) | 38, 382 |
| BspANI | GGCC | 1 cut(s) | 306 |
| BspCNI | CTCAG | 1 cut(s) | 43 |
| BspLI | GGNNCC | 2 cut(s) | 109, 361 |
| BspMI | ACCTGC | 1 cut(s) | 249 |
| BspT107I | GGYRCC | 2 cut(s) | 107, 359 |
| BspTNI | GGTCTC | 1 cut(s) | 231 |
| BsrFI | RCCGGY | 1 cut(s) | 40 |
| BsrI | ACTGG | 2 cut(s) | 192, 361 |
| BssAI | RCCGGY | 1 cut(s) | 40 |
| BssECI | CCNNGG | 1 cut(s) | 386 |
| BssMI | GATC | 2 cut(s) | 49, 421 |
| BssT1I | CCWWGG | 1 cut(s) | 386 |
| Bst4CI | ACNGT | 3 cut(s) | 268, 364, 373 |
| BstBAI | YACGTR | 2 cut(s) | 119, 199 |
| BstC8I | GCNNGC | 1 cut(s) | 314 |
| BstDEI | CTNAG | 1 cut(s) | 30 |
| BstDSI | CCRYGG | 1 cut(s) | 386 |
| BstF5I | GGATG | 1 cut(s) | 175 |
| BstKTI | GATC | 2 cut(s) | 52, 424 |
| BstMAI | GTCTC | 2 cut(s) | 33, 231 |
| BstMBI | GATC | 2 cut(s) | 49, 421 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 170, 344 |
| BstNSI | RCATGY | 3 cut(s) | 28, 177, 316 |
| BstSNI | TACGTA | 2 cut(s) | 119, 199 |
| BstV1I | GCAGC | 1 cut(s) | 133 |
| BstX2I | RGATCY | 1 cut(s) | 49 |
| BstYI | RGATCY | 1 cut(s) | 49 |
| BsuRI | GGCC | 1 cut(s) | 306 |
| BtgI | CCRYGG | 1 cut(s) | 386 |
| BtsCI | GGATG | 1 cut(s) | 175 |
| BtsI | GCAGTG | 1 cut(s) | 279 |
| BtsIMutI | CAGTG | 1 cut(s) | 279 |
| BveI | ACCTGC | 1 cut(s) | 249 |
| Cac8I | GCNNGC | 1 cut(s) | 314 |
| Cfr10I | RCCGGY | 1 cut(s) | 40 |
| CseI | GACGC | 1 cut(s) | 344 |
| Csp6I | GTAC | 5 cut(s) | 44, 120, 135, 254, 376 |
| CviAII | CATG | 8 cut(s) | 25, 95, 174, 313, 320, 344, 387, 430 |
| CviJI | RGCY | 3 cut(s) | 146, 306, 440 |
| CviKI_1 | RGCY | 3 cut(s) | 146, 306, 440 |
| CviQI | GTAC | 5 cut(s) | 44, 120, 135, 254, 376 |
| DdeI | CTNAG | 1 cut(s) | 30 |
| DpnI | GATC | 2 cut(s) | 51, 423 |
| DpnII | GATC | 2 cut(s) | 49, 421 |
| EaeI | YGGCCR | 1 cut(s) | 304 |
| Eco105I | TACGTA | 2 cut(s) | 119, 199 |
| Eco130I | CCWWGG | 1 cut(s) | 386 |
| Eco31I | GGTCTC | 1 cut(s) | 231 |
| EcoT14I | CCWWGG | 1 cut(s) | 386 |
| EcoT22I | ATGCAT | 1 cut(s) | 175 |
| ErhI | CCWWGG | 1 cut(s) | 386 |
| FaeI | CATG | 8 cut(s) | 28, 98, 177, 316, 323, 347, 390, 433 |
| FatI | CATG | 8 cut(s) | 24, 94, 173, 312, 319, 343, 386, 429 |
| FbaI | TGATCA | 1 cut(s) | 421 |
| Fnu4HI | GCNGC | 1 cut(s) | 147 |
| FokI | GGATG | 1 cut(s) | 182 |
| Fsp4HI | GCNGC | 1 cut(s) | 147 |
| GluI | GCNGC | 1 cut(s) | 147 |
| GsaI | CCCAGC | 1 cut(s) | 168 |
| HaeIII | GGCC | 1 cut(s) | 306 |
| HapII | CCGG | 1 cut(s) | 41 |
| HgaI | GACGC | 1 cut(s) | 344 |
| Hin1II | CATG | 8 cut(s) | 28, 98, 177, 316, 323, 347, 390, 433 |
| HinfI | GANTC | 5 cut(s) | 210, 394, 405, 434, 468 |
| HpaII | CCGG | 1 cut(s) | 41 |
| Hpy166II | GTNNAC | 2 cut(s) | 369, 376 |
| Hpy8I | GTNNAC | 2 cut(s) | 369, 376 |
| Hpy99I | CGWCG | 1 cut(s) | 338 |
| HpyAV | CCTTC | 2 cut(s) | 55, 121 |
| HpyCH4III | ACNGT | 3 cut(s) | 268, 364, 373 |
| HpyCH4IV | ACGT | 3 cut(s) | 118, 137, 198 |
| HpyCH4V | TGCA | 8 cut(s) | 19, 70, 149, 173, 185, 263, 284, 316 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 170, 344 |
| HpyF3I | CTNAG | 1 cut(s) | 30 |
| HpySE526I | ACGT | 3 cut(s) | 118, 137, 198 |
| Hsp92II | CATG | 8 cut(s) | 28, 98, 177, 316, 323, 347, 390, 433 |
| Ksp22I | TGATCA | 1 cut(s) | 421 |
| Kzo9I | GATC | 2 cut(s) | 49, 421 |
| Lsp1109I | GCAGC | 1 cut(s) | 133 |
| LweI | GCATC | 2 cut(s) | 160, 293 |
| MaeII | ACGT | 3 cut(s) | 118, 137, 198 |
| MaeIII | GTNAC | 3 cut(s) | 3, 194, 268 |
| MalI | GATC | 2 cut(s) | 51, 423 |
| MboI | GATC | 2 cut(s) | 49, 421 |
| MflI | RGATCY | 1 cut(s) | 49 |
| MlsI | TGGCCA | 1 cut(s) | 306 |
| MluCI | AATT | 1 cut(s) | 444 |
| MluNI | TGGCCA | 1 cut(s) | 306 |
| MlyI | GAGTC | 1 cut(s) | 403 |
| MmeI | TCCRAC | 1 cut(s) | 110 |
| MnlI | CCTC | 2 cut(s) | 98, 218 |
| Mox20I | TGGCCA | 1 cut(s) | 306 |
| Mph1103I | ATGCAT | 1 cut(s) | 175 |
| MroXI | GAANNNNTTC | 1 cut(s) | 209 |
| MscI | TGGCCA | 1 cut(s) | 306 |
| MseI | TTAA | 1 cut(s) | 480 |
| Msp20I | TGGCCA | 1 cut(s) | 306 |
| MspI | CCGG | 1 cut(s) | 41 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 170, 344 |
| NcoI | CCATGG | 1 cut(s) | 386 |
| NdeII | GATC | 2 cut(s) | 49, 421 |
| NlaIII | CATG | 8 cut(s) | 28, 98, 177, 316, 323, 347, 390, 433 |
| NlaIV | GGNNCC | 2 cut(s) | 109, 361 |
| NsiI | ATGCAT | 1 cut(s) | 175 |
| NspI | RCATGY | 3 cut(s) | 28, 177, 316 |
| PaeI | GCATGC | 1 cut(s) | 316 |
| PciI | ACATGT | 1 cut(s) | 24 |
| PdmI | GAANNNNTTC | 1 cut(s) | 209 |
| PfeI | GAWTC | 4 cut(s) | 210, 405, 434, 468 |
| Pfl23II | CGTACG | 1 cut(s) | 253 |
| PkrI | GCNGC | 1 cut(s) | 148 |
| PleI | GAGTC | 1 cut(s) | 402 |
| PpsI | GAGTC | 1 cut(s) | 402 |
| Ppu21I | YACGTR | 2 cut(s) | 119, 199 |
| PscI | ACATGT | 1 cut(s) | 24 |
| PspFI | CCCAGC | 1 cut(s) | 164 |
| PspLI | CGTACG | 1 cut(s) | 253 |
| PspN4I | GGNNCC | 2 cut(s) | 109, 361 |
| PsuI | RGATCY | 1 cut(s) | 49 |
| RsaI | GTAC | 5 cut(s) | 45, 121, 136, 255, 377 |
| RsaNI | GTAC | 5 cut(s) | 44, 120, 135, 254, 376 |
| SaqAI | TTAA | 1 cut(s) | 480 |
| SatI | GCNGC | 1 cut(s) | 147 |
| Sau3AI | GATC | 2 cut(s) | 49, 421 |
| SchI | GAGTC | 1 cut(s) | 403 |
| SetI | ASST | 5 cut(s) | 113, 121, 140, 201, 243 |
| SfaNI | GCATC | 2 cut(s) | 160, 293 |
| SnaBI | TACGTA | 2 cut(s) | 119, 199 |
| SphI | GCATGC | 1 cut(s) | 316 |
| Sse9I | AATT | 1 cut(s) | 444 |
| SsiI | CCGC | 2 cut(s) | 38, 382 |
| StyI | CCWWGG | 1 cut(s) | 386 |
| TaaI | ACNGT | 3 cut(s) | 268, 364, 373 |
| TaiI | ACGT | 3 cut(s) | 121, 140, 201 |
| TaqI | TCGA | 1 cut(s) | 103 |
| TasI | AATT | 1 cut(s) | 444 |
| TatI | WGTACW | 1 cut(s) | 375 |
| TfiI | GAWTC | 4 cut(s) | 210, 405, 434, 468 |
| Tru1I | TTAA | 1 cut(s) | 480 |
| Tru9I | TTAA | 1 cut(s) | 480 |
| TscAI | CASTG | 1 cut(s) | 286 |
| TseI | GCWGC | 1 cut(s) | 146 |
| TspDTI | ATGAA | 2 cut(s) | 93, 218 |
| TspRI | CASTG | 1 cut(s) | 286 |
| XceI | RCATGY | 3 cut(s) | 28, 177, 316 |
| XmnI | GAANNNNTTC | 1 cut(s) | 209 |
| Zsp2I | ATGCAT | 1 cut(s) | 175 |