Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003688

Physical Location & Seq

Genomic Coordinates Reverse (-)

55395017 .. 55400686

Gene Structure 5670 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26253

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2031 bp

ATGGCTGGTTCAGTCAGTGGGGAGCAACAGAGCGCCTACCCTGTTAACAACCGCCAAGGTGATAAAGATGATTTGTACAACCAACTCTGGCATACATGTGCCGGGTCTAATATCTATGTCCCACGCCCTGGAGACAAAGTCTTCTACTTCGCTCAAGGCCACATTGAACAGGTTGAGGCATATGCAGACCCAGACAGTAATGCGGCCATGCCAAAATACAATTTGCCTCCCAAGATTCTCTGCCATGTTGTTAATGTGCAGCTTAAGGCCGAAGTTCACACAGATGAAGTCTTTGCTCAGATAACCTTGCTTCCTGTGACTCAGCAAGACCAGCTAAGTTTTGAGGATGAAAATGCTCCATCTTTGCCTCATAGAACCAGAACATGCTTTAGCAAGATACTCACTCCATCTGACACAAGCACCCATGGTGGATTCTCTGTTCCAAAGCGACATGCCGAGGAGTGCTTTCCACCTTTGGAGATGTTTCATCAACCACCAGTACAGGAACTCACTACAAAGGACTTGCATGGAGTTGAATGGCACTTTCGTCATATATACCGCGGTCAGCCAAAGAGGCACTTGCTTACTAGTGGTTGGAGTACATTTGTGACTGCCAAGAAACTTGTTCCTGGGGATGCATGTATCTTTGTCAGAGGAGAAAATGGAGAGCTCTGTGTTGGCATATGCCGTGCAACCAAAACACAAGACAATGCAACAGCTTCCCTCATTTCTGGCAATAGCATGCAGCATGGCATCCTTGCGAGTGCCTTCCACGCCATTTGTACTGGAACCATGTTTACCGTGTATTATCGCCCTTGGACCAGTCCTGTGCCATTCATAATTCCATATGATCAATACATGAAATCACCCAAAGATGAATATTCTGTTGGGATGAGATTCAGAATGCGGTTTGAAGCTGAAGAATGTGCAGAGAAGAGATGTGAAGGTACCATAATAGATATTAAAGATAAGGATCCTGTTAGGTGGCCCAGTTCTGAATGGGGGTGTCTGAAGGTGCAATGGGATACCACATCAGCTACGCTCTTGCATTCTGAAAGGCTTTCTCCTTGGAACATTGAGCCTGCAGAATCCACCAAGACGAAGAGGACTTCTTTCCCTGTCCCACCTCATAAGAGACCACGTATACCTGATCTATCATTACCTGTGTTTTCTGGGTTGGCCAGGAATGGCCCATTTCCATTAATAATGCCTCAAAGACGAGAAAAGGTCTTTCAAGGTCAAGAAATAAGCGAAACACATGCTAATGAACTAGGTGCACCAATGTATGATCCGCTACACCAAAGTCCTAGCAGTTCAATAGCATTTTCCAGTGAAAATATGCTGACTCCAGGCCACATTAACCAATGGCCATCACAGTTGACTACTTTTGGGGTCGTTGACAGTGTTCCATTTAGCAGAAGCATGTCGGTTCCAAATATCAACTCCTCTGGATCCCAGGAATTAAGCGCCTCTAAACTGAGGAGTGAGACTCAAGGGCCATTTGTTCCATCAAATACCCTCATGCTTTTTGGAGTCAATTTAGATAACAGTCACTCGGAGCTCCCTTCACCACAAGTTGCCAATTCTAGTGGACATTTAAGTCCTTGTTCTATTCCTCCAATTTCTCAGTCAAGTGTTTCTGAAACTGTCCAACTTTCAGAGACATCTAAGAGTATTTCTTGTGTTCTTTCTGAGACACAATGCAAGAAATGTTGTTCTGTCAGCAACAGGAGTTGCATAAAGGTGCTCAAGTATGGAGCAGCCCTTGGAAGATCAGTGGACCTCACACGCTTTGATGGGTATGGTGAGCTTATTTCTGAGCTTGACCAGATGTTCGATTTTGAAGGAAGGTTGATCGATGGAAGTAGTGGATGGCAGGTAACCTACATGGACGATGAAGGAGACATGATGCTGATAGGAGATTATCTGTGGCATGAATTCCTGTCAATGGTGCGAAAAATGTTCATCAGTCCAAAGGATCAAGAAATCGATAGTCTGAATCCAGGCTCTCCAAATGCAACATCCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

676

Amino Acids

75.29

Weight (kDa)

5.83

Isoelectric Point (pI)

60.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	130 - 231	6e-25	B3 DNA binding domain
BRWD_AD	PF25313	261 - 364	9e-09	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	279 - 362	8.4e-31	Auxin response factor ancillary domain
AUX_IAA	PF02309	570 - 656	7.8e-09	AUX/IAA family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24730 FvH4_2g24730 FvH4_2g24730 FvH4_5g06540
malus_domestica	MD00G1056300.v1.1 MD05G1338500.v1.1 MD11G1297900.v1.1
prunus_persica	Prupe.8G252300_v2.0.a1
pyrus_communis	pycom02g21520 pycom03g21940 pycom03g21950 pycom05g12140 pycom11g26170 pycom16g06400 pycom16g24090
rosa_chinensis	RchiOBHm_Chr6g0292551
rosa_laevigata	RLG00000012010
rosa_multiflora	Rmu_co8118566.1_g000001 Rmu_sc0000515.1_g000001 Rmu_sc0003486.1_g000005 Rmu_sc0004825.1_g000018
rosa_roxburghii	Rroxscaffold_4G00318020 Rroxscaffold_7G00174940
rosa_rugosa	Rorug06G0227900
rosa_samantha	Rh5AG357200 Rh5DG382900 Rh6AG341000 Rh6AG341100 Rh6BG089400 Rh6BG348500 Rh6CG355300 Rh6CG355400 Rh6DG341100 Rh6DG341200
rosa_wichuraiana	Rw6G029710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1599
Acc36I	ACCTGC	1 cut(s)	1867
Acc65I	GGTACC	1 cut(s)	947
AccB1I	GGYRCC	1 cut(s)	947
AccB7I	CCANNNNNTGG	1 cut(s)	128
AccI	GTMKAC	1 cut(s)	1144
AccII	CGCG	1 cut(s)	561
AciI	CCGC	6 cut(s)	52, 203, 559, 561, 907, 1292
AclWI	GGATC	6 cut(s)	968, 981, 1283, 1446, 1459, 1986
AcoI	YGGCCR	3 cut(s)	204, 1179, 1367
AcsI	RAATTY	1 cut(s)	1937
AcuI	CTGAAG	2 cut(s)	939, 1031
AfaI	GTAC	5 cut(s)	77, 501, 601, 784, 949
AfiI	CCNNNNNNNGG	2 cut(s)	128, 1948
AflII	CTTAAG	1 cut(s)	263
AflIII	ACRYGT	1 cut(s)	95
AgsI	TTSAA	6 cut(s)	167, 536, 914, 1235, 1317, 1844
AhlI	ACTAGT	1 cut(s)	587
AjnI	CCWGG	6 cut(s)	127, 628, 1181, 1348, 1455, 2002
AjuI	GAANNNNNNNTTGG	2 cut(s)	870, 902
AloI	GAACNNNNNNTCC	2 cut(s)	423, 455
AluBI	AGCT	9 cut(s)	262, 334, 670, 719, 917, 1037, 1561, 1810, 1822
AluI	AGCT	9 cut(s)	262, 334, 670, 719, 917, 1037, 1561, 1810, 1822
Alw21I	GWGCWC	4 cut(s)	672, 1279, 1563, 1749
Alw26I	GTCTC	6 cut(s)	126, 1129, 1481, 1655, 1688, 1896
Alw44I	GTGCAC	1 cut(s)	1275
AlwI	GGATC	6 cut(s)	968, 981, 1283, 1446, 1459, 1986
AoxI	GGCC	9 cut(s)	157, 204, 267, 986, 1179, 1189, 1351, 1367, 1496
ApaLI	GTGCAC	1 cut(s)	1275
ApeKI	GCWGC	3 cut(s)	259, 745, 1760
ApoI	RAATTY	1 cut(s)	1937
ArsI	GACNNNNNNTTYG	2 cut(s)	1817, 1849
AseI	ATTAAT	1 cut(s)	1202
Asp718I	GGTACC	1 cut(s)	947
AspLEI	GCGC	2 cut(s)	35, 1469
AspS9I	GGNCC	5 cut(s)	819, 987, 1190, 1496, 1780
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	4 cut(s)	71, 858, 1560, 1817
AvaII	GGWCC	2 cut(s)	819, 1780
BaeGI	GKGCMC	1 cut(s)	1279
BalI	TGGCCA	2 cut(s)	1181, 1369
BamHI	GGATCC	2 cut(s)	973, 1451
BanI	GGYRCC	1 cut(s)	947
BanII	GRGCYC	2 cut(s)	672, 1563
BbsI	GAAGAC	1 cut(s)	133
Bbv12I	GWGCWC	4 cut(s)	672, 1279, 1563, 1749
BbvI	GCAGC	3 cut(s)	271, 757, 1772
BccI	CCATC	7 cut(s)	367, 415, 1378, 1516, 1790, 1853, 1866
BceAI	ACGGC	1 cut(s)	672
BcgI	CGANNNNNNTGC	2 cut(s)	1241, 1275
BciT130I	CCWGG	6 cut(s)	129, 630, 1183, 1350, 1457, 2004
BciVI	GTATCC	1 cut(s)	1018
BclI	TGATCA	1 cut(s)	850
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	6 cut(s)	126, 1129, 1481, 1655, 1688, 1896
BcuI	ACTAGT	1 cut(s)	587
BfaI	CTAG	4 cut(s)	588, 1271, 1308, 1587
BfmI	CTRYAG	1 cut(s)	1083
BfoI	RGCGCY	2 cut(s)	36, 1470
BfrI	CTTAAG	1 cut(s)	263
BfuAI	ACCTGC	1 cut(s)	1867
BfuI	GTATCC	1 cut(s)	1018
BglI	GCCNNNNNGGC	1 cut(s)	574
BisI	GCNGC	4 cut(s)	204, 260, 746, 1761
BlsI	GCNGC	4 cut(s)	205, 261, 747, 1762
Bme1390I	CCNGG	7 cut(s)	103, 129, 630, 1183, 1350, 1457, 2004
Bme18I	GGWCC	2 cut(s)	819, 1780
BmgT120I	GGNCC	5 cut(s)	819, 987, 1190, 1496, 1780
BmiI	GGNNCC	5 cut(s)	790, 949, 975, 1431, 1453
BmrFI	CCNGG	7 cut(s)	103, 129, 630, 1183, 1350, 1457, 2004
BmrI	ACTGGG	1 cut(s)	984
BmsI	GCATC	3 cut(s)	625, 762, 1899
BmuI	ACTGGG	1 cut(s)	984
BpiI	GAAGAC	1 cut(s)	133
BplI	GAGNNNNNCTC	2 cut(s)	1474, 1506
BpmI	CTGGAG	2 cut(s)	150, 1332
BpuEI	CTTGAG	3 cut(s)	138, 1476, 1733
BpuMI	CCSGG	1 cut(s)	103
Bsa29I	ATCGAT	2 cut(s)	1857, 1989
BsaAI	YACGTR	1 cut(s)	1142
BsaBI	GATNNNNATC	1 cut(s)	972
BsaI	GGTCTC	1 cut(s)	1129
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 1948
Bse1I	ACTGG	5 cut(s)	497, 790, 822, 990, 1329
Bse3DI	GCAATG	1 cut(s)	1025
Bse8I	GATNNNNATC	1 cut(s)	972
BseBI	CCWGG	6 cut(s)	129, 630, 1183, 1350, 1457, 2004
BseCI	ATCGAT	2 cut(s)	1857, 1989
BseGI	GGATG	6 cut(s)	352, 640, 753, 897, 1877, 2021
BseJI	GATNNNNATC	1 cut(s)	972
BseLI	CCNNNNNNNGG	2 cut(s)	128, 1948
BseMI	GCAATG	1 cut(s)	1025
BseMII	CTCAG	6 cut(s)	311, 335, 1469, 1640, 1683, 1809
BseNI	ACTGG	5 cut(s)	497, 790, 822, 990, 1329
BseRI	GAGGAG	4 cut(s)	473, 669, 1435, 1495
BseSI	GKGCMC	1 cut(s)	1279
BseXI	GCAGC	3 cut(s)	271, 757, 1772
BsgI	GTGCAG	2 cut(s)	278, 948
Bsh1236I	CGCG	1 cut(s)	561
BshFI	GGCC	9 cut(s)	159, 206, 269, 988, 1181, 1191, 1353, 1369, 1498
BshNI	GGYRCC	1 cut(s)	947
BshVI	ATCGAT	2 cut(s)	1857, 1989
BsiHKAI	GWGCWC	4 cut(s)	672, 1279, 1563, 1749
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	2 cut(s)	104, 1106
BslI	CCNNNNNNNGG	2 cut(s)	128, 1948
BsmAI	GTCTC	6 cut(s)	126, 1129, 1481, 1655, 1688, 1896
BsmFI	GGGAC	2 cut(s)	104, 1106
BsmI	GAATGC	2 cut(s)	909, 1048
BsnI	GGCC	9 cut(s)	159, 206, 269, 988, 1181, 1191, 1353, 1369, 1498
Bso31I	GGTCTC	1 cut(s)	1129
Bsp1286I	GDGCHC	4 cut(s)	672, 1279, 1563, 1749
Bsp1407I	TGTACA	1 cut(s)	75
Bsp143I	GATC	8 cut(s)	850, 973, 1150, 1288, 1451, 1772, 1854, 1978
Bsp19I	CCATGG	1 cut(s)	424
BspACI	CCGC	6 cut(s)	52, 203, 559, 561, 907, 1292
BspANI	GGCC	9 cut(s)	159, 206, 269, 988, 1181, 1191, 1353, 1369, 1498
BspCNI	CTCAG	6 cut(s)	310, 334, 1470, 1639, 1684, 1810
BspDI	ATCGAT	2 cut(s)	1857, 1989
BspFNI	CGCG	1 cut(s)	561
BspLI	GGNNCC	5 cut(s)	790, 949, 975, 1431, 1453
BspMAI	CTGCAG	1 cut(s)	1087
BspMI	ACCTGC	1 cut(s)	1867
BspPI	GGATC	6 cut(s)	968, 981, 1283, 1446, 1459, 1986
BspT107I	GGYRCC	1 cut(s)	947
BspTI	CTTAAG	1 cut(s)	263
BspTNI	GGTCTC	1 cut(s)	1129
BsrDI	GCAATG	1 cut(s)	1025
BsrGI	TGTACA	1 cut(s)	75
BsrI	ACTGG	5 cut(s)	497, 790, 822, 990, 1329
BssMI	GATC	8 cut(s)	850, 973, 1150, 1288, 1451, 1772, 1854, 1978
BssNAI	GTATAC	1 cut(s)	1145
BssT1I	CCWWGG	5 cut(s)	55, 424, 815, 1067, 1765
Bst1107I	GTATAC	1 cut(s)	1145
Bst2UI	CCWGG	6 cut(s)	129, 630, 1183, 1350, 1457, 2004
Bst4CI	ACNGT	6 cut(s)	197, 802, 1377, 1403, 1550, 1648
Bst6I	CTCTTC	2 cut(s)	929, 1097
BstAFI	CTTAAG	1 cut(s)	263
BstAUI	TGTACA	1 cut(s)	75
BstBAI	YACGTR	1 cut(s)	1142
BstC8I	GCNNGC	2 cut(s)	743, 1083
BstDEI	CTNAG	8 cut(s)	297, 321, 335, 1478, 1626, 1668, 1692, 1818
BstDSI	CCRYGG	2 cut(s)	424, 559
BstEII	GGTNACC	1 cut(s)	1879
BstF5I	GGATG	6 cut(s)	352, 640, 753, 897, 1877, 2021
BstFNI	CGCG	1 cut(s)	561
BstH2I	RGCGCY	2 cut(s)	36, 1470
BstHHI	GCGC	2 cut(s)	35, 1469
BstKTI	GATC	8 cut(s)	853, 976, 1153, 1291, 1454, 1775, 1857, 1981
BstMAI	GTCTC	6 cut(s)	126, 1129, 1481, 1655, 1688, 1896
BstMBI	GATC	8 cut(s)	850, 973, 1150, 1288, 1451, 1772, 1854, 1978
BstMWI	GCNNNNNNNGC	3 cut(s)	331, 574, 773
BstNI	CCWGG	6 cut(s)	129, 630, 1183, 1350, 1457, 2004
BstNSI	RCATGY	7 cut(s)	99, 387, 455, 642, 745, 1262, 1426
BstPI	GGTNACC	1 cut(s)	1879
BstSCI	CCNGG	7 cut(s)	101, 127, 628, 1181, 1348, 1455, 2002
BstSFI	CTRYAG	1 cut(s)	1083
BstSLI	GKGCMC	1 cut(s)	1279
BstUI	CGCG	1 cut(s)	561
BstV1I	GCAGC	3 cut(s)	271, 757, 1772
BstV2I	GAAGAC	1 cut(s)	133
BstX2I	RGATCY	2 cut(s)	973, 1451
BstYI	RGATCY	2 cut(s)	973, 1451
BstZ17I	GTATAC	1 cut(s)	1145
Bsu15I	ATCGAT	2 cut(s)	1857, 1989
BsuI	GTATCC	1 cut(s)	1018
BsuRI	GGCC	9 cut(s)	159, 206, 269, 988, 1181, 1191, 1353, 1369, 1498
BsuTUI	ATCGAT	2 cut(s)	1857, 1989
BtgI	CCRYGG	2 cut(s)	424, 559
BtsCI	GGATG	6 cut(s)	352, 640, 753, 897, 1877, 2021
BtsIMutI	CAGTG	4 cut(s)	22, 1336, 1408, 1782
BveI	ACCTGC	1 cut(s)	1867
Cac8I	GCNNGC	2 cut(s)	743, 1083
CfoI	GCGC	2 cut(s)	35, 1469
Cfr13I	GGNCC	5 cut(s)	819, 987, 1190, 1496, 1780
Cfr42I	CCGCGG	1 cut(s)	562
ClaI	ATCGAT	2 cut(s)	1857, 1989
Csp6I	GTAC	5 cut(s)	76, 500, 600, 783, 948
CspCI	CAANNNNNGTGG	4 cut(s)	761, 796, 1570, 1605
CviQI	GTAC	5 cut(s)	76, 500, 600, 783, 948
DdeI	CTNAG	8 cut(s)	297, 321, 335, 1478, 1626, 1668, 1692, 1818
DpnI	GATC	8 cut(s)	852, 975, 1152, 1290, 1453, 1774, 1856, 1980
DpnII	GATC	8 cut(s)	850, 973, 1150, 1288, 1451, 1772, 1854, 1978
DrdI	GACNNNNNNGTC	1 cut(s)	1599
DseDI	GACNNNNNNGTC	1 cut(s)	1599
EaeI	YGGCCR	3 cut(s)	204, 1179, 1367
Eam1104I	CTCTTC	2 cut(s)	929, 1097
EarI	CTCTTC	2 cut(s)	929, 1097
Ecl136II	GAGCTC	2 cut(s)	670, 1561
Eco130I	CCWWGG	5 cut(s)	55, 424, 815, 1067, 1765
Eco24I	GRGCYC	2 cut(s)	672, 1563
Eco31I	GGTCTC	1 cut(s)	1129
Eco47I	GGWCC	2 cut(s)	819, 1780
Eco53kI	GAGCTC	2 cut(s)	670, 1561
Eco57I	CTGAAG	2 cut(s)	939, 1031
Eco91I	GGTNACC	1 cut(s)	1879
EcoICRI	GAGCTC	2 cut(s)	670, 1561
EcoO65I	GGTNACC	1 cut(s)	1879
EcoRI	GAATTC	1 cut(s)	1937
EcoRII	CCWGG	6 cut(s)	127, 628, 1181, 1348, 1455, 2002
EcoT14I	CCWWGG	5 cut(s)	55, 424, 815, 1067, 1765
EcoT22I	ATGCAT	1 cut(s)	640
EcoT38I	GRGCYC	2 cut(s)	672, 1563
ErhI	CCWWGG	5 cut(s)	55, 424, 815, 1067, 1765
FalI	AAGNNNNNCTT	2 cut(s)	563, 595
FaqI	GGGAC	2 cut(s)	104, 1106
FauNDI	CATATG	3 cut(s)	181, 683, 847
FbaI	TGATCA	1 cut(s)	850
FblI	GTMKAC	1 cut(s)	1144
Fnu4HI	GCNGC	4 cut(s)	204, 260, 746, 1761
FokI	GGATG	6 cut(s)	359, 647, 740, 904, 1884, 2008
FriOI	GRGCYC	2 cut(s)	672, 1563
Fsp4HI	GCNGC	4 cut(s)	204, 260, 746, 1761
FspBI	CTAG	4 cut(s)	588, 1271, 1308, 1587
GlaI	GCGC	2 cut(s)	34, 1468
GluI	GCNGC	4 cut(s)	204, 260, 746, 1761
GsuI	CTGGAG	2 cut(s)	150, 1332
HaeII	RGCGCY	2 cut(s)	36, 1470
HaeIII	GGCC	9 cut(s)	159, 206, 269, 988, 1181, 1191, 1353, 1369, 1498
HapII	CCGG	1 cut(s)	102
HhaI	GCGC	2 cut(s)	35, 1469
Hin6I	GCGC	2 cut(s)	33, 1467
HinP1I	GCGC	2 cut(s)	33, 1467
HincII	GTYRAC	3 cut(s)	46, 1380, 1399
HindII	GTYRAC	3 cut(s)	46, 1380, 1399
HinfI	GANTC	9 cut(s)	235, 319, 432, 897, 1088, 1345, 1489, 1533, 1999
HpaI	GTTAAC	1 cut(s)	46
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	4 cut(s)	71, 858, 1560, 1817
Hpy166II	GTNNAC	9 cut(s)	46, 277, 798, 1145, 1277, 1380, 1399, 1592, 1780
Hpy188III	TCNNGA	3 cut(s)	1241, 1449, 1982
Hpy8I	GTNNAC	9 cut(s)	46, 277, 798, 1145, 1277, 1380, 1399, 1592, 1780
HpyAV	CCTTC	7 cut(s)	778, 938, 1006, 1575, 1838, 1842, 1892
HpyCH4III	ACNGT	6 cut(s)	197, 802, 1377, 1403, 1550, 1648
HpyCH4IV	ACGT	1 cut(s)	1141
HpyF10VI	GCNNNNNNNGC	3 cut(s)	331, 574, 773
HpyF3I	CTNAG	8 cut(s)	297, 321, 335, 1478, 1626, 1668, 1692, 1818
HpySE526I	ACGT	1 cut(s)	1141
HspAI	GCGC	2 cut(s)	33, 1467
KpnI	GGTACC	1 cut(s)	951
Ksp22I	TGATCA	1 cut(s)	850
KspAI	GTTAAC	1 cut(s)	46
KspI	CCGCGG	1 cut(s)	562
Kzo9I	GATC	8 cut(s)	850, 973, 1150, 1288, 1451, 1772, 1854, 1978
LmnI	GCTCC	5 cut(s)	22, 361, 1558, 1566, 1757
Lsp1109I	GCAGC	3 cut(s)	271, 757, 1772
LweI	GCATC	3 cut(s)	625, 762, 1899
MaeI	CTAG	4 cut(s)	588, 1271, 1308, 1587
MaeII	ACGT	1 cut(s)	1141
MaeIII	GTNAC	4 cut(s)	316, 607, 1550, 1879
MalI	GATC	8 cut(s)	852, 975, 1152, 1290, 1453, 1774, 1856, 1980
MboI	GATC	8 cut(s)	850, 973, 1150, 1288, 1451, 1772, 1854, 1978
MboII	GAAGA	5 cut(s)	133, 932, 946, 1114, 1782
MflI	RGATCY	2 cut(s)	973, 1451
MhlI	GDGCHC	4 cut(s)	672, 1279, 1563, 1749
MlsI	TGGCCA	2 cut(s)	1181, 1369
MluCI	AATT	7 cut(s)	220, 840, 1460, 1537, 1582, 1620, 1937
MluNI	TGGCCA	2 cut(s)	1181, 1369
MlyI	GAGTC	4 cut(s)	313, 1339, 1483, 1542
MmeI	TCCRAC	2 cut(s)	575, 1675
Mox20I	TGGCCA	2 cut(s)	1181, 1369
Mph1103I	ATGCAT	1 cut(s)	640
MscI	TGGCCA	2 cut(s)	1181, 1369
MseI	TTAA	8 cut(s)	45, 252, 264, 963, 1202, 1359, 1463, 1598
MslI	CAYNNNNRTG	4 cut(s)	96, 282, 1263, 1742
Msp20I	TGGCCA	2 cut(s)	1181, 1369
MspA1I	CMGCKG	1 cut(s)	561
MspCI	CTTAAG	1 cut(s)	263
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	7 cut(s)	103, 129, 630, 1183, 1350, 1457, 2004
Mva1269I	GAATGC	2 cut(s)	909, 1048
MvaI	CCWGG	6 cut(s)	129, 630, 1183, 1350, 1457, 2004
MvnI	CGCG	1 cut(s)	561
MwoI	GCNNNNNNNGC	3 cut(s)	331, 574, 773
NciI	CCSGG	1 cut(s)	103
NcoI	CCATGG	1 cut(s)	424
NdeI	CATATG	3 cut(s)	181, 683, 847
NdeII	GATC	8 cut(s)	850, 973, 1150, 1288, 1451, 1772, 1854, 1978
NlaIV	GGNNCC	5 cut(s)	790, 949, 975, 1431, 1453
NmeAIII	GCCGAG	1 cut(s)	481
NmuCI	GTSAC	3 cut(s)	316, 607, 1550
NsiI	ATGCAT	1 cut(s)	640
NspI	RCATGY	7 cut(s)	99, 387, 455, 642, 745, 1262, 1426
PaeI	GCATGC	1 cut(s)	745
PciI	ACATGT	1 cut(s)	95
PctI	GAATGC	2 cut(s)	909, 1048
PfeI	GAWTC	5 cut(s)	235, 432, 897, 1088, 1999
PflFI	GACNNNGTC	1 cut(s)	137
PflMI	CCANNNNNTGG	1 cut(s)	128
PkrI	GCNGC	4 cut(s)	205, 261, 747, 1762
PleI	GAGTC	4 cut(s)	313, 1339, 1483, 1541
PpsI	GAGTC	4 cut(s)	313, 1339, 1483, 1541
Ppu21I	YACGTR	1 cut(s)	1142
PscI	ACATGT	1 cut(s)	95
PshBI	ATTAAT	1 cut(s)	1202
Psp124BI	GAGCTC	2 cut(s)	672, 1563
Psp6I	CCWGG	6 cut(s)	127, 628, 1181, 1348, 1455, 2002
PspEI	GGTNACC	1 cut(s)	1879
PspGI	CCWGG	6 cut(s)	127, 628, 1181, 1348, 1455, 2002
PspN4I	GGNNCC	5 cut(s)	790, 949, 975, 1431, 1453
PspPI	GGNCC	5 cut(s)	819, 987, 1190, 1496, 1780
PsrI	GAACNNNNNNTAC	2 cut(s)	781, 813
PstI	CTGCAG	1 cut(s)	1087
PsuI	RGATCY	2 cut(s)	973, 1451
PsyI	GACNNNGTC	1 cut(s)	137
RsaI	GTAC	5 cut(s)	77, 501, 601, 784, 949
RsaNI	GTAC	5 cut(s)	76, 500, 600, 783, 948
RseI	CAYNNNNRTG	4 cut(s)	96, 282, 1263, 1742
SacI	GAGCTC	2 cut(s)	672, 1563
SacII	CCGCGG	1 cut(s)	562
SaqAI	TTAA	8 cut(s)	45, 252, 264, 963, 1202, 1359, 1463, 1598
SatI	GCNGC	4 cut(s)	204, 260, 746, 1761
Sau3AI	GATC	8 cut(s)	850, 973, 1150, 1288, 1451, 1772, 1854, 1978
Sau96I	GGNCC	5 cut(s)	819, 987, 1190, 1496, 1780
SchI	GAGTC	4 cut(s)	313, 1339, 1483, 1542
ScrFI	CCNGG	7 cut(s)	103, 129, 630, 1183, 1350, 1457, 2004
SduI	GDGCHC	4 cut(s)	672, 1279, 1563, 1749
SfaNI	GCATC	3 cut(s)	625, 762, 1899
SfcI	CTRYAG	1 cut(s)	1083
Sfr303I	CCGCGG	1 cut(s)	562
SgrBI	CCGCGG	1 cut(s)	562
SinI	GGWCC	2 cut(s)	819, 1780
SmiMI	CAYNNNNRTG	4 cut(s)	96, 282, 1263, 1742
SmlI	CTYRAG	4 cut(s)	153, 263, 1491, 1748
SmoI	CTYRAG	4 cut(s)	153, 263, 1491, 1748
SpeI	ACTAGT	1 cut(s)	587
SphI	GCATGC	1 cut(s)	745
Sse9I	AATT	7 cut(s)	220, 840, 1460, 1537, 1582, 1620, 1937
SsiI	CCGC	6 cut(s)	52, 203, 559, 561, 907, 1292
SspI	AATATT	1 cut(s)	881
SspMI	CTAG	4 cut(s)	588, 1271, 1308, 1587
SstI	GAGCTC	2 cut(s)	672, 1563
StyD4I	CCNGG	7 cut(s)	101, 127, 628, 1181, 1348, 1455, 2002
StyI	CCWWGG	5 cut(s)	55, 424, 815, 1067, 1765
TaaI	ACNGT	6 cut(s)	197, 802, 1377, 1403, 1550, 1648
TaiI	ACGT	1 cut(s)	1144
TaqI	TCGA	3 cut(s)	1836, 1857, 1989
TasI	AATT	7 cut(s)	220, 840, 1460, 1537, 1582, 1620, 1937
TatI	WGTACW	4 cut(s)	75, 499, 599, 782
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	5 cut(s)	235, 432, 897, 1088, 1999
Tru1I	TTAA	8 cut(s)	45, 252, 264, 963, 1202, 1359, 1463, 1598
Tru9I	TTAA	8 cut(s)	45, 252, 264, 963, 1202, 1359, 1463, 1598
TscAI	CASTG	4 cut(s)	22, 1336, 1408, 1782
TseFI	GTSAC	3 cut(s)	316, 607, 1550
TseI	GCWGC	3 cut(s)	259, 745, 1760
Tsp45I	GTSAC	3 cut(s)	316, 607, 1550
TspRI	CASTG	4 cut(s)	22, 1336, 1408, 1782
Tth111I	GACNNNGTC	1 cut(s)	137
Van91I	CCANNNNNTGG	1 cut(s)	128
Vha464I	CTTAAG	1 cut(s)	263
VneI	GTGCAC	1 cut(s)	1275
VpaK11BI	GGWCC	2 cut(s)	819, 1780
VspI	ATTAAT	1 cut(s)	1202
XapI	RAATTY	1 cut(s)	1937
XceI	RCATGY	7 cut(s)	99, 387, 455, 642, 745, 1262, 1426
XmiI	GTMKAC	1 cut(s)	1144
XspI	CTAG	4 cut(s)	588, 1271, 1308, 1587
Zsp2I	ATGCAT	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.