Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004825.1

Orthogroup ID

OG0003688

Physical Location & Seq

Genomic Coordinates Forward (+)

58191 .. 61101

Gene Structure 2911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004825.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

atgggtcgggcccggcttccacctcctcaacccctgcgacggtcaacaggtcaccggaatcctctccatgacttcaccagaatccaatccctcgacgtcaaaatcgagaccaaaaccaagaggagaaatggagagctccgtgttggaatatgccgtgagaccaaaagacaagacaatgcaacagcttctctcatttctggcaatagcatgcagcatggcatccttgcgagtgctttccatgccatttctactggaaccatgtttaccgtgtactatcgcccttggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

95

Amino Acids

10.8

Weight (kDa)

11.36

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24730 FvH4_2g24730 FvH4_2g24730 FvH4_5g06540
malus_domestica	MD00G1056300.v1.1 MD05G1338500.v1.1 MD11G1297900.v1.1
prunus_persica	Prupe.8G252300_v2.0.a1
pyrus_communis	pycom02g21520 pycom03g21940 pycom03g21950 pycom05g12140 pycom11g26170 pycom16g06400 pycom16g24090
rosa_chinensis	RchiOBHm_Chr6g0292551
rosa_laevigata	RLG00000012010
rosa_multiflora	Rmu_co8118566.1_g000001 Rmu_sc0000515.1_g000001 Rmu_sc0003486.1_g000005 Rmu_sc0004825.1_g000018
rosa_roxburghii	Rroxscaffold_4G00318020 Rroxscaffold_7G00174940
rosa_rugosa	Rorug06G0227900
rosa_samantha	Rh5AG357200 Rh5DG382900 Rh6AG341000 Rh6AG341100 Rh6BG089400 Rh6BG348500 Rh6CG355300 Rh6CG355400 Rh6DG341100 Rh6DG341200
rosa_wichuraiana	Rw6G029710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	99
AcyI	GRCGYC	1 cut(s)	96
AfaI	GTAC	1 cut(s)	272
AfiI	CCNNNNNNNGG	1 cut(s)	39
AluBI	AGCT	2 cut(s)	136, 185
AluI	AGCT	2 cut(s)	136, 185
Alw21I	GWGCWC	1 cut(s)	138
Alw26I	GTCTC	2 cut(s)	101, 152
AoxI	GGCC	1 cut(s)	9
ApaI	GGGCCC	1 cut(s)	13
ApeKI	GCWGC	1 cut(s)	211
AspS9I	GGNCC	2 cut(s)	9, 10
AsuC2I	CCSGG	1 cut(s)	13
AsuHPI	GGTGA	2 cut(s)	44, 67
BaeGI	GKGCMC	1 cut(s)	13
BanII	GRGCYC	2 cut(s)	13, 138
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	1 cut(s)	223
BceAI	ACGGC	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	13
BcoDI	GTCTC	2 cut(s)	101, 152
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
Bme1390I	CCNGG	1 cut(s)	13
BmgT120I	GGNCC	2 cut(s)	9, 10
BmiI	GGNNCC	2 cut(s)	11, 256
BmrFI	CCNGG	1 cut(s)	13
BmsI	GCATC	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	13
BsaHI	GRCGYC	1 cut(s)	96
BsaI	GGTCTC	2 cut(s)	101, 152
BsaJI	CCNNGG	1 cut(s)	281
BsaWI	WCCGGW	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse1I	ACTGG	1 cut(s)	256
BseDI	CCNNGG	1 cut(s)	281
BseGI	GGATG	1 cut(s)	219
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	256
BseRI	GAGGAG	2 cut(s)	15, 136
BseSI	GKGCMC	1 cut(s)	13
BseXI	GCAGC	1 cut(s)	223
BshFI	GGCC	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	13, 55
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	2 cut(s)	101, 152
BsnI	GGCC	1 cut(s)	11
Bso31I	GGTCTC	2 cut(s)	101, 152
Bsp120I	GGGCCC	1 cut(s)	9
Bsp1286I	GDGCHC	2 cut(s)	13, 138
BspANI	GGCC	1 cut(s)	11
BspLI	GGNNCC	2 cut(s)	11, 256
BspTNI	GGTCTC	2 cut(s)	101, 152
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	1 cut(s)	281
BssNI	GRCGYC	1 cut(s)	96
BssT1I	CCWWGG	1 cut(s)	281
Bst4CI	ACNGT	2 cut(s)	42, 268
BstACI	GRCGYC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	209
BstEII	GGTNACC	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	219
BstMAI	GTCTC	2 cut(s)	101, 152
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNSI	RCATGY	1 cut(s)	211
BstPI	GGTNACC	1 cut(s)	50
BstSCI	CCNGG	1 cut(s)	11
BstSLI	GKGCMC	1 cut(s)	13
BstV1I	GCAGC	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	11
BtsCI	GGATG	1 cut(s)	219
Cac8I	GCNNGC	1 cut(s)	209
Cfr13I	GGNCC	2 cut(s)	9, 10
Csp6I	GTAC	1 cut(s)	271
CviAII	CATG	5 cut(s)	68, 208, 215, 239, 259
CviJI	RGCY	4 cut(s)	11, 16, 136, 185
CviKI_1	RGCY	4 cut(s)	11, 16, 136, 185
CviQI	GTAC	1 cut(s)	271
Ecl136II	GAGCTC	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	281
Eco24I	GRGCYC	2 cut(s)	13, 138
Eco31I	GGTCTC	2 cut(s)	101, 152
Eco53kI	GAGCTC	1 cut(s)	136
Eco91I	GGTNACC	1 cut(s)	50
EcoICRI	GAGCTC	1 cut(s)	136
EcoO65I	GGTNACC	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	281
EcoT38I	GRGCYC	2 cut(s)	13, 138
ErhI	CCWWGG	1 cut(s)	281
FaeI	CATG	5 cut(s)	71, 211, 218, 242, 262
FaiI	YATR	6 cut(s)	69, 151, 209, 216, 240, 260
FatI	CATG	5 cut(s)	67, 207, 214, 238, 258
Fnu4HI	GCNGC	1 cut(s)	212
FokI	GGATG	1 cut(s)	206
FriOI	GRGCYC	2 cut(s)	13, 138
Fsp4HI	GCNGC	1 cut(s)	212
GluI	GCNGC	1 cut(s)	212
HaeIII	GGCC	1 cut(s)	11
HapII	CCGG	2 cut(s)	13, 55
Hin1I	GRCGYC	1 cut(s)	96
Hin1II	CATG	5 cut(s)	71, 211, 218, 242, 262
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HinfI	GANTC	2 cut(s)	58, 81
HpaII	CCGG	2 cut(s)	13, 55
HphI	GGTGA	2 cut(s)	44, 67
Hpy166II	GTNNAC	3 cut(s)	45, 264, 271
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	3 cut(s)	45, 264, 271
Hpy99I	CGWCG	2 cut(s)	42, 98
HpyCH4III	ACNGT	2 cut(s)	42, 268
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	2 cut(s)	179, 211
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpySE526I	ACGT	1 cut(s)	96
Hsp92I	GRCGYC	1 cut(s)	96
Hsp92II	CATG	5 cut(s)	71, 211, 218, 242, 262
LmnI	GCTCC	1 cut(s)	141
LpnPI	CCDG	7 cut(s)	26, 33, 47, 68, 91, 183, 237
Lsp1109I	GCAGC	1 cut(s)	223
LweI	GCATC	1 cut(s)	228
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	50
MhlI	GDGCHC	2 cut(s)	13, 138
MmeI	TCCRAC	1 cut(s)	124
MnlI	CCTC	5 cut(s)	33, 36, 72, 101, 114
MspI	CCGG	2 cut(s)	13, 55
MspR9I	CCNGG	1 cut(s)	13
MwoI	GCNNNNNNNGC	1 cut(s)	239
NciI	CCSGG	1 cut(s)	13
NlaIII	CATG	5 cut(s)	71, 211, 218, 242, 262
NlaIV	GGNNCC	2 cut(s)	11, 256
NmuCI	GTSAC	1 cut(s)	50
NspI	RCATGY	1 cut(s)	211
PaeI	GCATGC	1 cut(s)	211
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PfeI	GAWTC	2 cut(s)	58, 81
PkrI	GCNGC	1 cut(s)	213
Psp124BI	GAGCTC	1 cut(s)	138
PspEI	GGTNACC	1 cut(s)	50
PspN4I	GGNNCC	2 cut(s)	11, 256
PspOMI	GGGCCC	1 cut(s)	9
PspPI	GGNCC	2 cut(s)	9, 10
PsrI	GAACNNNNNNTAC	2 cut(s)	247, 279
RsaI	GTAC	1 cut(s)	272
RsaNI	GTAC	1 cut(s)	271
SacI	GAGCTC	1 cut(s)	138
SatI	GCNGC	1 cut(s)	212
Sau96I	GGNCC	2 cut(s)	9, 10
ScrFI	CCNGG	1 cut(s)	13
SduI	GDGCHC	2 cut(s)	13, 138
SetI	ASST	5 cut(s)	25, 52, 99, 138, 187
SfaNI	GCATC	1 cut(s)	228
SphI	GCATGC	1 cut(s)	211
SstI	GAGCTC	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	11
StyI	CCWWGG	1 cut(s)	281
TaaI	ACNGT	2 cut(s)	42, 268
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	2 cut(s)	93, 105
TatI	WGTACW	1 cut(s)	270
TfiI	GAWTC	2 cut(s)	58, 81
TseFI	GTSAC	1 cut(s)	50
TseI	GCWGC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	50
TspGWI	ACGGA	1 cut(s)	128
XceI	RCATGY	1 cut(s)	211
ZraI	GACGTC	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.