Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0003688

Physical Location & Seq

Genomic Coordinates Forward (+)

4116062 .. 4117749

Gene Structure 1688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

ATGTCATTAACCAGATTGGGGTGGAGGCATCGACTAATCAGCTGGGTCGATCAGCAGATGCCAGTGTATAATCTTGCATCGATTCTTTGTCGGGTTATCAATGTATCATTGAAGGCTGAACCAAACACTGATGAAGTATTTGCACAAGTCACTTTACTTCCCGAATCAAATTTTTCAGAATGGTTATGTCACACTCTGCTATTCTTCCTGTCAAAATGGGGAAGGTTTGCATGGTTGTCACTCTTCGAACAGATTTCTCTGGTTAGAACTTCAATCTACAAGCTTTGTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000001 GO:0000166 GO:0000226 GO:0000287 GO:0001505 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005509 GO:0005515 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005783 GO:0005829 GO:0005886 GO:0006464 GO:0006508 GO:0006807 GO:0006810 GO:0006839 GO:0006915 GO:0006928 GO:0006996 GO:0007005 GO:0007006 GO:0007010 GO:0007017 GO:0007018 GO:0007154 GO:0007165 GO:0008088 GO:0008150 GO:0008152 GO:0008219 GO:0008637 GO:0009966 GO:0009987 GO:0010570 GO:0010646 GO:0010821 GO:0010970 GO:0012501 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016192 GO:0016462 GO:0016579 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0019538 GO:0019725 GO:0019867 GO:0019896 GO:0022406 GO:0023051 GO:0023052 GO:0030705 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032386 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032592 GO:0032865 GO:0032879 GO:0032886 GO:0032991 GO:0033043 GO:0034640 GO:0034643 GO:0035639 GO:0035794 GO:0036094 GO:0036211 GO:0040008 GO:0042592 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044232 GO:0044233 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046872 GO:0046902 GO:0046907 GO:0046928 GO:0047497 GO:0048308 GO:0048311 GO:0048489 GO:0048583 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050804 GO:0050896 GO:0051046 GO:0051049 GO:0051056 GO:0051128 GO:0051179 GO:0051234 GO:0051270 GO:0051588 GO:0051640 GO:0051641 GO:0051646 GO:0051648 GO:0051649 GO:0051650 GO:0051654 GO:0051656 GO:0051716 GO:0055081 GO:0055088 GO:0055091 GO:0060237 GO:0060341 GO:0060632 GO:0061024 GO:0065007 GO:0065008 GO:0070646 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0072384 GO:0090559 GO:0097159 GO:0097190 GO:0097345 GO:0097367 GO:0097479 GO:0097480 GO:0098573 GO:0098588 GO:0098796 GO:0098798 GO:0098799 GO:0098805 GO:0098930 GO:0099003 GO:0099098 GO:0099111 GO:0099177 GO:0140056 GO:1900428 GO:1901265 GO:1901363 GO:1901564 GO:1902108 GO:1902110 GO:1902513 GO:1902531 GO:1902686 GO:1903338 GO:1903530 GO:1905710 GO:1990456

KEGG Pathways

Metabolic & Signaling

ko04137 ko04214 map04137 map04214

Pfam Domains

Protein Families

EF-hand_5 EF_assoc_1 EF_assoc_2 Ras

Protein Analysis

98

Amino Acids

11.36

Weight (kDa)

8.59

Isoelectric Point (pI)

33.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24730 FvH4_2g24730 FvH4_2g24730 FvH4_5g06540
malus_domestica	MD00G1056300.v1.1 MD05G1338500.v1.1 MD11G1297900.v1.1
prunus_persica	Prupe.8G252300_v2.0.a1
pyrus_communis	pycom02g21520 pycom03g21940 pycom03g21950 pycom05g12140 pycom11g26170 pycom16g06400 pycom16g24090
rosa_chinensis	RchiOBHm_Chr6g0292551
rosa_laevigata	RLG00000012010
rosa_multiflora	Rmu_co8118566.1_g000001 Rmu_sc0000515.1_g000001 Rmu_sc0003486.1_g000005 Rmu_sc0004825.1_g000018
rosa_roxburghii	Rroxscaffold_4G00318020 Rroxscaffold_7G00174940
rosa_rugosa	Rorug06G0227900
rosa_samantha	Rh5AG357200 Rh5DG382900 Rh6AG341000 Rh6AG341100 Rh6BG089400 Rh6BG348500 Rh6CG355300 Rh6CG355400 Rh6DG341100 Rh6DG341200
rosa_wichuraiana	Rw6G029710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	169
AfiI	CCNNNNNNNGG	1 cut(s)	18
AgsI	TTSAA	2 cut(s)	112, 273
AluBI	AGCT	2 cut(s)	42, 283
AluI	AGCT	2 cut(s)	42, 283
ApoI	RAATTY	1 cut(s)	169
AsuII	TTCGAA	1 cut(s)	246
BmsI	GCATC	3 cut(s)	37, 48, 86
Bpu14I	TTCGAA	1 cut(s)	246
Bsa29I	ATCGAT	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	1 cut(s)	18
Bse1I	ACTGG	1 cut(s)	62
BseCI	ATCGAT	1 cut(s)	80
BseLI	CCNNNNNNNGG	1 cut(s)	18
BseNI	ACTGG	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	42
BshVI	ATCGAT	1 cut(s)	80
BslI	CCNNNNNNNGG	1 cut(s)	18
Bsp119I	TTCGAA	1 cut(s)	246
Bsp143I	GATC	1 cut(s)	49
BspDI	ATCGAT	1 cut(s)	80
BspT104I	TTCGAA	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	62
BssMI	GATC	1 cut(s)	49
Bst6I	CTCTTC	1 cut(s)	248
BstBI	TTCGAA	1 cut(s)	246
BstKTI	GATC	1 cut(s)	52
BstMBI	GATC	1 cut(s)	49
Bsu15I	ATCGAT	1 cut(s)	80
BsuTUI	ATCGAT	1 cut(s)	80
BtsIMutI	CAGTG	2 cut(s)	69, 126
ClaI	ATCGAT	1 cut(s)	80
CspCI	CAANNNNNGTGG	1 cut(s)	268
CviAII	CATG	1 cut(s)	231
CviJI	RGCY	4 cut(s)	42, 116, 283, 291
CviKI_1	RGCY	4 cut(s)	42, 116, 283, 291
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
FaeI	CATG	1 cut(s)	234
FaiI	YATR	3 cut(s)	69, 187, 232
FatI	CATG	1 cut(s)	230
GsaI	CCCAGC	1 cut(s)	46
Hin1II	CATG	1 cut(s)	234
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	2 cut(s)	82, 164
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	161
HpyAV	CCTTC	2 cut(s)	106, 216
HpyCH4V	TGCA	3 cut(s)	77, 143, 230
Hsp92II	CATG	1 cut(s)	234
Kzo9I	GATC	1 cut(s)	49
LpnPI	CCDG	5 cut(s)	25, 28, 75, 221, 245
LweI	GCATC	3 cut(s)	37, 48, 86
MaeIII	GTNAC	3 cut(s)	148, 188, 237
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	2 cut(s)	196, 235
MluCI	AATT	1 cut(s)	169
MnlI	CCTC	1 cut(s)	18
MseI	TTAA	1 cut(s)	8
MspA1I	CMGCKG	1 cut(s)	42
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	234
NmuCI	GTSAC	3 cut(s)	148, 188, 237
NspV	TTCGAA	1 cut(s)	246
PfeI	GAWTC	2 cut(s)	82, 164
PspFI	CCCAGC	1 cut(s)	42
PvuII	CAGCTG	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	8
Sau3AI	GATC	1 cut(s)	49
SetI	ASST	3 cut(s)	44, 227, 285
SfaNI	GCATC	3 cut(s)	37, 48, 86
SfuI	TTCGAA	1 cut(s)	246
Sse9I	AATT	1 cut(s)	169
TaqI	TCGA	4 cut(s)	31, 48, 80, 246
TasI	AATT	1 cut(s)	169
TfiI	GAWTC	2 cut(s)	82, 164
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TscAI	CASTG	2 cut(s)	69, 133
TseFI	GTSAC	3 cut(s)	148, 188, 237
Tsp45I	GTSAC	3 cut(s)	148, 188, 237
TspDTI	ATGAA	1 cut(s)	147
TspRI	CASTG	2 cut(s)	69, 133
XapI	RAATTY	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.