Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003688

Physical Location & Seq

Genomic Coordinates Forward (+)

14024957 .. 14034896

Gene Structure 9940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG089400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAAGATGGCGAAGCCCGGCGCTGCCTCCAAGGCCCGAATATACTCCGATGTTAACATCATCCGCCCCAAGCAGCACTGGGATTACGAGGCCCTCACCTTCCAATGGAGGGTCAATGGGTCGAGCCCGGCTTCCACCTCCTCAACCCCTGCCCCGGTCAATGGGTCGCCGGAATCCTCTCCACGACTTCACCAGAATCCAATCCCTCGACGTCAAAATCGAGACCAAAACCAAGGGGCAAGCTGTAGCTGTCCAGTTCCAAAAATGCCAACTTTGAAAAGATTGATTGGGTGCAAGATAAGGAGAAATGGAGAGCTCCATGTTGGTATACGCCGTGCGACCAAAAGACAAGACAATGCAACAGCTTCTCTCATTTCTGGCAATAGCATGCAGCATGGCATCCTTTTGCTCAATACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0042752 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

ko03008 ko04064 ko04137 ko04139 ko04310 ko04520 ko04712 ko05162 ko05168 ko05169 map03008 map04064 map04137 map04139 map04310 map04520 map04712 map05162 map05168 map05169

Pfam Domains

Protein Families

Pkinase

Protein Analysis

139

Amino Acids

15.32

Weight (kDa)

10.95

Isoelectric Point (pI)

66.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24730 FvH4_2g24730 FvH4_2g24730 FvH4_5g06540
malus_domestica	MD00G1056300.v1.1 MD05G1338500.v1.1 MD11G1297900.v1.1
prunus_persica	Prupe.8G252300_v2.0.a1
pyrus_communis	pycom02g21520 pycom03g21940 pycom03g21950 pycom05g12140 pycom11g26170 pycom16g06400 pycom16g24090
rosa_chinensis	RchiOBHm_Chr6g0292551
rosa_laevigata	RLG00000012010
rosa_multiflora	Rmu_co8118566.1_g000001 Rmu_sc0000515.1_g000001 Rmu_sc0003486.1_g000005 Rmu_sc0004825.1_g000018
rosa_roxburghii	Rroxscaffold_4G00318020 Rroxscaffold_7G00174940
rosa_rugosa	Rorug06G0227900
rosa_samantha	Rh5AG357200 Rh5DG382900 Rh6AG341000 Rh6AG341100 Rh6BG089400 Rh6BG348500 Rh6CG355300 Rh6CG355400 Rh6DG341100 Rh6DG341200
rosa_wichuraiana	Rw6G029710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	214
AccI	GTMKAC	1 cut(s)	328
AciI	CCGC	1 cut(s)	64
AcyI	GRCGYC	1 cut(s)	211
AfiI	CCNNNNNNNGG	4 cut(s)	105, 109, 154, 161
AgsI	TTSAA	1 cut(s)	277
AluBI	AGCT	4 cut(s)	243, 249, 316, 365
AluI	AGCT	4 cut(s)	243, 249, 316, 365
Alw21I	GWGCWC	1 cut(s)	318
Alw26I	GTCTC	1 cut(s)	216
AoxI	GGCC	2 cut(s)	33, 90
ApeKI	GCWGC	3 cut(s)	23, 73, 391
AspLEI	GCGC	1 cut(s)	23
AspS9I	GGNCC	2 cut(s)	34, 91
AsuC2I	CCSGG	3 cut(s)	18, 128, 155
AsuHPI	GGTGA	2 cut(s)	88, 182
BanII	GRGCYC	2 cut(s)	128, 318
Bbv12I	GWGCWC	1 cut(s)	318
BbvI	GCAGC	3 cut(s)	10, 85, 403
BceAI	ACGGC	1 cut(s)	318
BcnI	CCSGG	3 cut(s)	18, 128, 155
BcoDI	GTCTC	1 cut(s)	216
BfmI	CTRYAG	1 cut(s)	244
BfoI	RGCGCY	1 cut(s)	24
BglI	GCCNNNNNGGC	1 cut(s)	32
BisI	GCNGC	3 cut(s)	24, 74, 392
BlsI	GCNGC	3 cut(s)	25, 75, 393
Bme1390I	CCNGG	3 cut(s)	18, 128, 155
BmgT120I	GGNCC	2 cut(s)	34, 91
BmrFI	CCNGG	3 cut(s)	18, 128, 155
BmrI	ACTGGG	1 cut(s)	88
BmsI	GCATC	1 cut(s)	408
BmuI	ACTGGG	1 cut(s)	88
BpuMI	CCSGG	3 cut(s)	18, 128, 155
BsaAI	YACGTR	1 cut(s)	417
BsaHI	GRCGYC	1 cut(s)	211
BsaI	GGTCTC	1 cut(s)	216
BsaJI	CCNNGG	3 cut(s)	30, 153, 232
Bsc4I	CCNNNNNNNGG	4 cut(s)	105, 109, 154, 161
Bse1I	ACTGG	2 cut(s)	83, 254
BseDI	CCNNGG	3 cut(s)	30, 153, 232
BseGI	GGATG	2 cut(s)	60, 399
BseLI	CCNNNNNNNGG	4 cut(s)	105, 109, 154, 161
BseNI	ACTGG	2 cut(s)	83, 254
BseRI	GAGGAG	1 cut(s)	130
BseXI	GCAGC	3 cut(s)	10, 85, 403
BshFI	GGCC	2 cut(s)	35, 92
BsiHKAI	GWGCWC	1 cut(s)	318
BsiSI	CCGG	4 cut(s)	18, 128, 155, 170
BslI	CCNNNNNNNGG	4 cut(s)	105, 109, 154, 161
BsmAI	GTCTC	1 cut(s)	216
BsnI	GGCC	2 cut(s)	35, 92
Bso31I	GGTCTC	1 cut(s)	216
Bsp1286I	GDGCHC	2 cut(s)	128, 318
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	2 cut(s)	35, 92
BspTNI	GGTCTC	1 cut(s)	216
BsrI	ACTGG	2 cut(s)	83, 254
BssECI	CCNNGG	3 cut(s)	30, 153, 232
BssNAI	GTATAC	1 cut(s)	329
BssNI	GRCGYC	1 cut(s)	211
BssT1I	CCWWGG	2 cut(s)	30, 232
Bst1107I	GTATAC	1 cut(s)	329
BstACI	GRCGYC	1 cut(s)	211
BstBAI	YACGTR	1 cut(s)	417
BstC8I	GCNNGC	2 cut(s)	241, 389
BstF5I	GGATG	2 cut(s)	60, 399
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	23
BstMAI	GTCTC	1 cut(s)	216
BstMWI	GCNNNNNNNGC	1 cut(s)	32
BstNSI	RCATGY	1 cut(s)	391
BstSCI	CCNGG	3 cut(s)	16, 126, 153
BstSFI	CTRYAG	1 cut(s)	244
BstV1I	GCAGC	3 cut(s)	10, 85, 403
BstZ17I	GTATAC	1 cut(s)	329
BsuRI	GGCC	2 cut(s)	35, 92
BtsCI	GGATG	2 cut(s)	60, 399
BtsIMutI	CAGTG	1 cut(s)	76
Cac8I	GCNNGC	2 cut(s)	241, 389
CfoI	GCGC	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	34, 91
CviAII	CATG	3 cut(s)	320, 388, 395
CviJI	RGCY	9 cut(s)	16, 35, 92, 126, 131, 243, 249, 316, 365
CviKI_1	RGCY	9 cut(s)	16, 35, 92, 126, 131, 243, 249, 316, 365
EciI	GGCGGA	1 cut(s)	53
Ecl136II	GAGCTC	1 cut(s)	316
Eco130I	CCWWGG	2 cut(s)	30, 232
Eco24I	GRGCYC	2 cut(s)	128, 318
Eco31I	GGTCTC	1 cut(s)	216
Eco53kI	GAGCTC	1 cut(s)	316
EcoICRI	GAGCTC	1 cut(s)	316
EcoO109I	RGGNCCY	1 cut(s)	91
EcoT14I	CCWWGG	2 cut(s)	30, 232
EcoT38I	GRGCYC	2 cut(s)	128, 318
ErhI	CCWWGG	2 cut(s)	30, 232
FaeI	CATG	3 cut(s)	323, 391, 398
FaiI	YATR	5 cut(s)	43, 321, 329, 389, 396
FatI	CATG	3 cut(s)	319, 387, 394
FblI	GTMKAC	1 cut(s)	328
Fnu4HI	GCNGC	3 cut(s)	24, 74, 392
FokI	GGATG	2 cut(s)	47, 386
FriOI	GRGCYC	2 cut(s)	128, 318
Fsp4HI	GCNGC	3 cut(s)	24, 74, 392
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	3 cut(s)	24, 74, 392
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	2 cut(s)	35, 92
HapII	CCGG	4 cut(s)	18, 128, 155, 170
HhaI	GCGC	1 cut(s)	23
Hin1I	GRCGYC	1 cut(s)	211
Hin1II	CATG	3 cut(s)	323, 391, 398
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	55
HindII	GTYRAC	1 cut(s)	55
HinfI	GANTC	2 cut(s)	173, 196
HpaI	GTTAAC	1 cut(s)	55
HpaII	CCGG	4 cut(s)	18, 128, 155, 170
HphI	GGTGA	2 cut(s)	88, 182
Hpy166II	GTNNAC	2 cut(s)	55, 329
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	2 cut(s)	55, 329
Hpy99I	CGWCG	1 cut(s)	213
HpyAV	CCTTC	1 cut(s)	109
HpyCH4IV	ACGT	2 cut(s)	211, 416
HpyCH4V	TGCA	3 cut(s)	294, 359, 391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	32
HpySE526I	ACGT	2 cut(s)	211, 416
Hsp92I	GRCGYC	1 cut(s)	211
Hsp92II	CATG	3 cut(s)	323, 391, 398
HspAI	GCGC	1 cut(s)	21
KspAI	GTTAAC	1 cut(s)	55
LmnI	GCTCC	1 cut(s)	321
LpnPI	CCDG	9 cut(s)	31, 64, 141, 162, 168, 183, 206, 267, 363
Lsp1109I	GCAGC	3 cut(s)	10, 85, 403
LweI	GCATC	1 cut(s)	408
MaeII	ACGT	2 cut(s)	211, 416
MboII	GAAGA	1 cut(s)	16
MhlI	GDGCHC	2 cut(s)	128, 318
MnlI	CCTC	8 cut(s)	37, 82, 102, 104, 148, 151, 187, 216
MseI	TTAA	1 cut(s)	54
MspI	CCGG	4 cut(s)	18, 128, 155, 170
MspR9I	CCNGG	3 cut(s)	18, 128, 155
MwoI	GCNNNNNNNGC	1 cut(s)	32
NciI	CCSGG	3 cut(s)	18, 128, 155
NlaIII	CATG	3 cut(s)	323, 391, 398
NspI	RCATGY	1 cut(s)	391
PaeI	GCATGC	1 cut(s)	391
PcsI	WCGNNNNNNNCGW	1 cut(s)	217
PfeI	GAWTC	2 cut(s)	173, 196
PkrI	GCNGC	3 cut(s)	25, 75, 393
Ppu21I	YACGTR	1 cut(s)	417
Psp124BI	GAGCTC	1 cut(s)	318
PspPI	GGNCC	2 cut(s)	34, 91
SacI	GAGCTC	1 cut(s)	318
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	3 cut(s)	24, 74, 392
Sau96I	GGNCC	2 cut(s)	34, 91
ScrFI	CCNGG	3 cut(s)	18, 128, 155
SduI	GDGCHC	2 cut(s)	128, 318
SetI	ASST	8 cut(s)	101, 140, 214, 245, 251, 318, 367, 419
SfaNI	GCATC	1 cut(s)	408
SfcI	CTRYAG	1 cut(s)	244
SphI	GCATGC	1 cut(s)	391
SsiI	CCGC	1 cut(s)	64
SstI	GAGCTC	1 cut(s)	318
StyD4I	CCNGG	3 cut(s)	16, 126, 153
StyI	CCWWGG	2 cut(s)	30, 232
TaiI	ACGT	2 cut(s)	214, 419
TaqI	TCGA	3 cut(s)	122, 208, 220
TfiI	GAWTC	2 cut(s)	173, 196
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	1 cut(s)	83
TseI	GCWGC	3 cut(s)	23, 73, 391
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	83
XceI	RCATGY	1 cut(s)	391
XmiI	GTMKAC	1 cut(s)	328
ZraI	GACGTC	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.