Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003688

Physical Location & Seq

Genomic Coordinates Forward (+)

36571941 .. 36572644

Gene Structure 704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0227900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGTGCGTGAGGTCACTGTGGTGTTTAAGGATCTTCCGTACACTGAGCTGCAGATCATAAATATTTTCAAAGGTTTTGACCTGAATGGAGACGGCAAACTGTCCTGGGATGAGGTGAAGGCTGCGTTCGCTAAACTCGGGGCGTTTTTGCCCGACTACAGAGCTTGGCGAGGACGAAGCTGTGCCGATGCCGACAAGGATGGCTTCATCTCTCTCGAGACCGAGCTCAATGAACTTGTCACCTATACCCACAAACTACAGTATAAACCGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

91

Amino Acids

10.45

Weight (kDa)

5.76

Isoelectric Point (pI)

20.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	19 - 46	1.2e-06	EF hand domain
EF-hand_6	PF13405	19 - 47	1.1e-06	EF-hand domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24730 FvH4_2g24730 FvH4_2g24730 FvH4_5g06540
malus_domestica	MD00G1056300.v1.1 MD05G1338500.v1.1 MD11G1297900.v1.1
prunus_persica	Prupe.8G252300_v2.0.a1
pyrus_communis	pycom02g21520 pycom03g21940 pycom03g21950 pycom05g12140 pycom11g26170 pycom16g06400 pycom16g24090
rosa_chinensis	RchiOBHm_Chr6g0292551
rosa_laevigata	RLG00000012010
rosa_multiflora	Rmu_co8118566.1_g000001 Rmu_sc0000515.1_g000001 Rmu_sc0003486.1_g000005 Rmu_sc0004825.1_g000018
rosa_roxburghii	Rroxscaffold_4G00318020 Rroxscaffold_7G00174940
rosa_rugosa	Rorug06G0227900
rosa_samantha	Rh5AG357200 Rh5DG382900 Rh6AG341000 Rh6AG341100 Rh6BG089400 Rh6BG348500 Rh6CG355300 Rh6CG355400 Rh6DG341100 Rh6DG341200
rosa_wichuraiana	Rw6G029710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	41
AgsI	TTSAA	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	104
AleI	CACNNNNGTG	1 cut(s)	20
AluBI	AGCT	4 cut(s)	49, 164, 180, 226
AluI	AGCT	4 cut(s)	49, 164, 180, 226
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	2 cut(s)	84, 212
AlwI	GGATC	1 cut(s)	39
Ama87I	CYCGRG	2 cut(s)	137, 215
ApeKI	GCWGC	2 cut(s)	49, 122
AsuHPI	GGTGA	2 cut(s)	127, 232
AvaI	CYCGRG	2 cut(s)	137, 215
BanII	GRGCYC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	36, 109
BccI	CCATC	1 cut(s)	194
BceAI	ACGGC	1 cut(s)	109
BciT130I	CCWGG	1 cut(s)	106
BcoDI	GTCTC	2 cut(s)	84, 212
BfmI	CTRYAG	3 cut(s)	50, 157, 257
BisI	GCNGC	2 cut(s)	50, 123
BlsI	GCNGC	2 cut(s)	51, 124
Bme1390I	CCNGG	1 cut(s)	106
BmeT110I	CYCGRG	2 cut(s)	137, 215
BmrFI	CCNGG	1 cut(s)	106
BmsI	GCATC	1 cut(s)	178
BsaI	GGTCTC	1 cut(s)	212
BsaJI	CCNNGG	1 cut(s)	105
BseBI	CCWGG	1 cut(s)	106
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	2 cut(s)	115, 205
BseMII	CTCAG	1 cut(s)	36
BseXI	GCAGC	2 cut(s)	36, 109
BsiHKAI	GWGCWC	1 cut(s)	228
BsiHKCI	CYCGRG	2 cut(s)	137, 215
BsmAI	GTCTC	2 cut(s)	84, 212
BsmBI	CGTCTC	1 cut(s)	84
Bso31I	GGTCTC	1 cut(s)	212
BsoBI	CYCGRG	2 cut(s)	137, 215
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp143I	GATC	2 cut(s)	31, 54
BspCNI	CTCAG	1 cut(s)	37
BspMAI	CTGCAG	1 cut(s)	54
BspPI	GGATC	1 cut(s)	39
BspTNI	GGTCTC	1 cut(s)	212
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	2 cut(s)	31, 54
Bst2UI	CCWGG	1 cut(s)	106
Bst4CI	ACNGT	3 cut(s)	19, 102, 261
BstDEI	CTNAG	1 cut(s)	45
BstF5I	GGATG	2 cut(s)	115, 205
BstKTI	GATC	2 cut(s)	34, 57
BstMAI	GTCTC	2 cut(s)	84, 212
BstMBI	GATC	2 cut(s)	31, 54
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	104
BstSFI	CTRYAG	3 cut(s)	50, 157, 257
BstV1I	GCAGC	2 cut(s)	36, 109
BstX2I	RGATCY	1 cut(s)	31
BstYI	RGATCY	1 cut(s)	31
BtsCI	GGATG	2 cut(s)	115, 205
BtsIMutI	CAGTG	2 cut(s)	15, 42
Csp6I	GTAC	1 cut(s)	40
CviJI	RGCY	6 cut(s)	49, 122, 164, 180, 204, 226
CviKI_1	RGCY	6 cut(s)	49, 122, 164, 180, 204, 226
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	1 cut(s)	45
DpnI	GATC	2 cut(s)	33, 56
DpnII	GATC	2 cut(s)	31, 54
Ecl136II	GAGCTC	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	212
Eco53kI	GAGCTC	1 cut(s)	226
Eco88I	CYCGRG	2 cut(s)	137, 215
EcoICRI	GAGCTC	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	104
EcoT38I	GRGCYC	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	84
FaiI	YATR	3 cut(s)	59, 246, 264
FalI	AAGNNNNNCTT	2 cut(s)	188, 220
Fnu4HI	GCNGC	2 cut(s)	50, 123
FokI	GGATG	2 cut(s)	122, 212
FriOI	GRGCYC	1 cut(s)	228
Fsp4HI	GCNGC	2 cut(s)	50, 123
GluI	GCNGC	2 cut(s)	50, 123
HphI	GGTGA	2 cut(s)	127, 232
Hpy166II	GTNNAC	1 cut(s)	42
Hpy188III	TCNNGA	2 cut(s)	215, 217
Hpy8I	GTNNAC	1 cut(s)	42
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	3 cut(s)	19, 102, 261
HpyCH4V	TGCA	1 cut(s)	52
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	45
Kzo9I	GATC	2 cut(s)	31, 54
LpnPI	CCDG	3 cut(s)	91, 95, 118
Lsp1109I	GCAGC	2 cut(s)	36, 109
LweI	GCATC	1 cut(s)	178
MaeIII	GTNAC	2 cut(s)	13, 238
MalI	GATC	2 cut(s)	33, 56
MboI	GATC	2 cut(s)	31, 54
MboII	GAAGA	1 cut(s)	26
MflI	RGATCY	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	228
MnlI	CCTC	3 cut(s)	4, 106, 164
MseI	TTAA	1 cut(s)	27
MslI	CAYNNNNRTG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	106
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	2 cut(s)	31, 54
NmuCI	GTSAC	2 cut(s)	13, 238
OliI	CACNNNNGTG	1 cut(s)	20
PaeR7I	CTCGAG	1 cut(s)	215
PkrI	GCNGC	2 cut(s)	51, 124
Psp124BI	GAGCTC	1 cut(s)	228
Psp6I	CCWGG	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	104
PstI	CTGCAG	1 cut(s)	54
PsuI	RGATCY	1 cut(s)	31
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
RseI	CAYNNNNRTG	1 cut(s)	20
SacI	GAGCTC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	2 cut(s)	50, 123
Sau3AI	GATC	2 cut(s)	31, 54
ScrFI	CCNGG	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	228
SetI	ASST	9 cut(s)	15, 51, 76, 84, 117, 166, 182, 228, 245
SfaNI	GCATC	1 cut(s)	178
SfcI	CTRYAG	3 cut(s)	50, 157, 257
Sfr274I	CTCGAG	1 cut(s)	215
SlaI	CTCGAG	1 cut(s)	215
SmiMI	CAYNNNNRTG	1 cut(s)	20
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SspI	AATATT	1 cut(s)	64
SstI	GAGCTC	1 cut(s)	228
StyD4I	CCNGG	1 cut(s)	104
TaaI	ACNGT	3 cut(s)	19, 102, 261
TaqI	TCGA	1 cut(s)	216
TaqII	GACCGA	1 cut(s)	236
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	2 cut(s)	22, 49
TseFI	GTSAC	2 cut(s)	13, 238
TseI	GCWGC	2 cut(s)	49, 122
Tsp45I	GTSAC	2 cut(s)	13, 238
TspDTI	ATGAA	2 cut(s)	196, 246
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	2 cut(s)	22, 49
XhoI	CTCGAG	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.