Rh6CG355400

Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003688
Physical Location & Seq
Reverse (-)
54372372 .. 54374189
1818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG355400.1

Sequence Viewer

Length: 402 bp
ATGGCTGGTTCAGTCAGTGGGGAGCAACAGAGCGCCTACCCTGTTAACAACCGCCAAGAGCAGGTTGAGGCATATGCAGACCCAGACAGTAATGCGGCCATGCCAAAATACAATTTGCCTCCCAAGATTCTCTGCCATGTTGTTAATGTGCAGCTTAAGGCCGAAGTTCACACAGATGAAGTCTTTGCTCAGATAACCTTGCTTCCTGTGACTCAGCAAGACCAGCTAAGTTTTGAGGATGAAAATGCTCCATCTTTGCCTCATAGAACCAGAACATGCTTTAGCAAGATACTCACTCCATCTGACACAAGCACCCATGGTGGATTCTCTGTTCCAAAGCGACATGCCGAGGAGTGCTTTCCACCTTTGGTTAGTATCCTTTCATGGCTTCCATCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
AUX_IAA Auxin_resp B3

Protein Analysis

133

Amino Acids

14.7

Weight (kDa)

5.43

Isoelectric Point (pI)

63.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 52
AciI CCGC 2 cut(s) 52, 95
AcoI YGGCCR 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 61
AflII CTTAAG 1 cut(s) 155
AloI GAACNNNNNNTCC 2 cut(s) 315, 347
AluBI AGCT 2 cut(s) 154, 226
AluI AGCT 2 cut(s) 154, 226
AoxI GGCC 2 cut(s) 96, 159
ApeKI GCWGC 1 cut(s) 151
AspLEI GCGC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 163
BccI CCATC 3 cut(s) 259, 307, 400
BciVI GTATCC 1 cut(s) 386
BfoI RGCGCY 1 cut(s) 36
BfrI CTTAAG 1 cut(s) 155
BfuAI ACCTGC 1 cut(s) 52
BfuI GTATCC 1 cut(s) 386
BisI GCNGC 2 cut(s) 96, 152
BlsI GCNGC 2 cut(s) 97, 153
BsaJI CCNNGG 2 cut(s) 316, 348
Bsc4I CCNNNNNNNGG 1 cut(s) 61
BseDI CCNNGG 2 cut(s) 316, 348
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMII CTCAG 2 cut(s) 203, 227
BseRI GAGGAG 1 cut(s) 365
BseXI GCAGC 1 cut(s) 163
BsgI GTGCAG 1 cut(s) 170
BshFI GGCC 2 cut(s) 98, 161
BslI CCNNNNNNNGG 1 cut(s) 61
BsnI GGCC 2 cut(s) 98, 161
Bsp19I CCATGG 1 cut(s) 316
BspACI CCGC 2 cut(s) 52, 95
BspANI GGCC 2 cut(s) 98, 161
BspCNI CTCAG 2 cut(s) 202, 226
BspMI ACCTGC 1 cut(s) 52
BspTI CTTAAG 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 316, 348
BssT1I CCWWGG 1 cut(s) 316
Bst4CI ACNGT 1 cut(s) 89
BstAFI CTTAAG 1 cut(s) 155
BstDEI CTNAG 3 cut(s) 189, 213, 227
BstDSI CCRYGG 1 cut(s) 316
BstF5I GGATG 1 cut(s) 244
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 1 cut(s) 35
BstMWI GCNNNNNNNGC 1 cut(s) 223
BstNSI RCATGY 2 cut(s) 279, 347
BstV1I GCAGC 1 cut(s) 163
BsuI GTATCC 1 cut(s) 386
BsuRI GGCC 2 cut(s) 98, 161
BtgI CCRYGG 1 cut(s) 316
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 1 cut(s) 22
BveI ACCTGC 1 cut(s) 52
CfoI GCGC 1 cut(s) 35
CviAII CATG 6 cut(s) 100, 137, 276, 317, 344, 384
CviJI RGCY 6 cut(s) 5, 98, 154, 161, 226, 388
CviKI_1 RGCY 6 cut(s) 5, 98, 154, 161, 226, 388
DdeI CTNAG 3 cut(s) 189, 213, 227
EaeI YGGCCR 1 cut(s) 96
Eco130I CCWWGG 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 316
FaeI CATG 6 cut(s) 103, 140, 279, 320, 347, 387
FaiI YATR 9 cut(s) 73, 75, 101, 138, 264, 277, 318, 345, 385
FatI CATG 6 cut(s) 99, 136, 275, 316, 343, 383
FauNDI CATATG 1 cut(s) 73
Fnu4HI GCNGC 2 cut(s) 96, 152
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 2 cut(s) 96, 152
GlaI GCGC 1 cut(s) 34
GluI GCNGC 2 cut(s) 96, 152
HaeII RGCGCY 1 cut(s) 36
HaeIII GGCC 2 cut(s) 98, 161
HhaI GCGC 1 cut(s) 35
Hin1II CATG 6 cut(s) 103, 140, 279, 320, 347, 387
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 3 cut(s) 127, 211, 324
HpaI GTTAAC 1 cut(s) 46
Hpy166II GTNNAC 2 cut(s) 46, 169
Hpy188I TCNGA 2 cut(s) 192, 304
Hpy8I GTNNAC 2 cut(s) 46, 169
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4V TGCA 2 cut(s) 77, 151
HpyF10VI GCNNNNNNNGC 1 cut(s) 223
HpyF3I CTNAG 3 cut(s) 189, 213, 227
Hsp92II CATG 6 cut(s) 103, 140, 279, 320, 347, 387
HspAI GCGC 1 cut(s) 33
KspAI GTTAAC 1 cut(s) 46
LmnI GCTCC 2 cut(s) 22, 253
LpnPI CCDG 6 cut(s) 47, 54, 96, 219, 236, 283
Lsp1109I GCAGC 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 208
MluCI AATT 1 cut(s) 112
MlyI GAGTC 1 cut(s) 205
MnlI CCTC 5 cut(s) 61, 129, 229, 270, 343
MseI TTAA 3 cut(s) 45, 144, 156
MslI CAYNNNNRTG 1 cut(s) 174
MspCI CTTAAG 1 cut(s) 155
MwoI GCNNNNNNNGC 1 cut(s) 223
NcoI CCATGG 1 cut(s) 316
NdeI CATATG 1 cut(s) 73
NlaIII CATG 6 cut(s) 103, 140, 279, 320, 347, 387
NmeAIII GCCGAG 1 cut(s) 373
NmuCI GTSAC 1 cut(s) 208
NspI RCATGY 2 cut(s) 279, 347
PfeI GAWTC 2 cut(s) 127, 324
PkrI GCNGC 2 cut(s) 97, 153
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
RseI CAYNNNNRTG 1 cut(s) 174
SaqAI TTAA 3 cut(s) 45, 144, 156
SatI GCNGC 2 cut(s) 96, 152
SchI GAGTC 1 cut(s) 205
SetI ASST 5 cut(s) 66, 156, 200, 228, 367
SmiMI CAYNNNNRTG 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 1 cut(s) 112
SsiI CCGC 2 cut(s) 52, 95
StyI CCWWGG 1 cut(s) 316
TaaI ACNGT 1 cut(s) 89
TasI AATT 1 cut(s) 112
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 2 cut(s) 127, 324
Tru1I TTAA 3 cut(s) 45, 144, 156
Tru9I TTAA 3 cut(s) 45, 144, 156
TscAI CASTG 1 cut(s) 22
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 1 cut(s) 151
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 3 cut(s) 192, 255, 372
TspRI CASTG 1 cut(s) 22
Vha464I CTTAAG 1 cut(s) 155
XceI RCATGY 2 cut(s) 279, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.