Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0003688

Physical Location & Seq

Genomic Coordinates Forward (+)

10530797 .. 10536295

Gene Structure 5499 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1056300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2121 bp

ATGGCGCGGAGGACTGCTGCTGGAGTGGAAGGGTTGCCGTCCACCGCCTCCGTGAATGCTGTAGAAAGCAGCGGATGTACGGACGCCGCCGTGCCGGCAGCTAACAACAACCAAGGTGAGAAAGATGATTTGTACCATCAGCTATGGCATGCGTGTGCCGGGGCGAATGTTTACGTTCCCCGCCCTGGCGAGAAGGTTTTCTACTTCCTTCAAGGTCACATGGAACAGGTGGAGGCATATGCAAACCAAGACTGTAAAATGGAAATGCCAAGATACAATTTGCCTTCCAAGATCCTCTGCAATGTTGTATGTGTTCAGCTAAAGGCTGAAGCTCACACAGACGAAGTGTATGCTCAAATCACCTTGCTTCCTGTGACCGAGGAAGACCAGGTAAGGGCAGAGGAAGAAAATACTCCACCCTTGCCTCGGCGAACCAGTACACGCTCCTTTAGCAAGGTACTCACCCCATCGGACACAAGCACCCACGGTGGATTCTCTGTTCCCAAACGACAAGCTGATGAGTGCCTTCCACCTCTGGACATGTCTCAGCAACCACCGGTTCAAGATCTGGTAGCAAAGGACTTGCAGGGATATGAATGGTGCTTTCGCCATATATTTCGAGGTCAGCCAAAGAGGCACTTGCTTACTAGTGGCTGGAGTACGTTTGTGACTACAAAAAGACTTGTTGCTGGGGATGCATGTATCTTTGCAAGAGGAGAAAATGGAGAACTCTGTGTTGGCATACGCCGTGCGACCAAAACACAAGACACTGCATCAACTTCTCTCATTTCTGGCCACAGCATGCAACATGGCATACTTGCCAGCGCTTTCCATGCCATTTCTACTGGTACCATGTTTACTGTGTACTACCACCCATGGACGAGTCCTGCTGCATTCATAATTCCTTTTGATCAATACATGAAATCAGCCGAAAATGACTATTCCATTGGAATGAGATTCAGAATGTGTTCCGAAGGTGAAGAATGTGCAGAGAAGAAGAGGTTGGAAGGTACTATAATAGATATCGAAGATAACGATTGCTTGAGGTGGCCCATTTCAGAATGGAGGTGTCTGAAGGTGCGATTGGATACTACATTAGATACATGCTTGCATTCCGAAAGGCTTTCTCCTTGGAATATCATACCTCTCCAACCTAAGAAGAGGGCACGTTTACCTGATCCACCATCCCCTGGGGTTTCTAGCTTGGGCAGGAAAGGTTCATTGGTGATTTCAGTTGAGTCCACACCTCCAAGGAAAAAAAAGGTCTTTCAAGGTCAAGAAACTAGTGATCCACCTGCTCATGAACCAGTTACACCAAAACAGCTATTACTGCCACAGTTCATCCCACCCCCAAATCCTGACTGGGACCACACAGATTTGGGATTGGAAAACAATCTCAACGTTCCAATGAACGACCCATTTTACCAATGTCCTGGCTATCCAAAAGCTCCAGGCCTTACTAACCAATGGCCACCAATGTTTGGTTTTGGAGTCTTTGACAGTGGCACGTATAAAAGAAGCATGTCAGTTCCAAATATCAGCTCCTCGGAGTCCCAGAATTTGAGAGCCTTCGAACTGAGGAGTGAGACTCAATCGCCACTTGTCGAACAAAAGAGTACAATGCTTTTTGGAGTCAATATAGTTACTAGTCACCCCGAGCTCCCTTCACCACAAGTTGCCAATTCTATTGAACTTTGTAGTCCTTGTTCTATTCCTCCAATATCTCATTCAAGTGTTTCTGAAACAGTCCAGCTGTCAGAGACATCGAAGAGTATCTCTGGCGTTTGTTCTGAGAAACAATGCAAGAAATGTAGCTCCGTCAATAACAGGAGTTGCATAAAGGTGCTCAAATATGGAGCTCCTGTTGGAAGATCGATTGACCTCACGCGCTTTGATGGGTACAACGAACTCATTTGTGAGCTTGACCAGATGTTCGATTTCAAAGGAAGCCTGATCGATGGAAGCAGTGGATGCCAGGTAACCTACATGGATGACGAAGGAGACAGGATGCTGATAGGAGATTACCTGTGGCACGAATTCCAGTCCATGGCACAGCGATTGTTCATCTGTCCGAAAAATGAAATGCCGAATCCAGGCTCCCCAAATGCAGTATCCATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

707

Amino Acids

78.34

Weight (kDa)

5.78

Isoelectric Point (pI)

58.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	150 - 251	2.7e-22	B3 DNA binding domain
ARF_AD	PF06507	299 - 383	4.3e-25	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24730 FvH4_2g24730 FvH4_2g24730 FvH4_5g06540
malus_domestica	MD00G1056300.v1.1 MD05G1338500.v1.1 MD11G1297900.v1.1
prunus_persica	Prupe.8G252300_v2.0.a1
pyrus_communis	pycom02g21520 pycom03g21940 pycom03g21950 pycom05g12140 pycom11g26170 pycom16g06400 pycom16g24090
rosa_chinensis	RchiOBHm_Chr6g0292551
rosa_laevigata	RLG00000012010
rosa_multiflora	Rmu_co8118566.1_g000001 Rmu_sc0000515.1_g000001 Rmu_sc0003486.1_g000005 Rmu_sc0004825.1_g000018
rosa_roxburghii	Rroxscaffold_4G00318020 Rroxscaffold_7G00174940
rosa_rugosa	Rorug06G0227900
rosa_samantha	Rh5AG357200 Rh5DG382900 Rh6AG341000 Rh6AG341100 Rh6BG089400 Rh6BG348500 Rh6CG355300 Rh6CG355400 Rh6DG341100 Rh6DG341200
rosa_wichuraiana	Rw6G029710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1303
Acc36I	ACCTGC	1 cut(s)	1303
Acc65I	GGTACC	1 cut(s)	848
AccB1I	GGYRCC	1 cut(s)	848
AccB7I	CCANNNNNTGG	3 cut(s)	1190, 1481, 2047
AccII	CGCG	2 cut(s)	7, 1888
AciI	CCGC	5 cut(s)	7, 45, 72, 87, 181
AclI	AACGTT	1 cut(s)	1401
AclWI	GGATC	3 cut(s)	286, 1172, 1283
AcoI	YGGCCR	2 cut(s)	793, 1469
AcsI	RAATTY	2 cut(s)	1558, 2036
AcuI	CTGAAG	2 cut(s)	348, 1094
AcyI	GRCGYC	1 cut(s)	84
AfeI	AGCGCT	1 cut(s)	826
AfiI	CCNNNNNNNGG	7 cut(s)	185, 394, 426, 1190, 1481, 2047, 2093
AflIII	ACRYGT	1 cut(s)	540
AgeI	ACCGGT	1 cut(s)	556
AgsI	TTSAA	6 cut(s)	212, 563, 1271, 1691, 1731, 1942
AhlI	ACTAGT	3 cut(s)	647, 1283, 1646
AjnI	CCWGG	7 cut(s)	184, 387, 1189, 1432, 1450, 1974, 2092
AloI	GAACNNNNNNTCC	2 cut(s)	483, 515
Alw21I	GWGCWC	3 cut(s)	1662, 1848, 1861
Alw26I	GTCTC	4 cut(s)	549, 1580, 1754, 1995
AlwI	GGATC	3 cut(s)	286, 1172, 1283
Ama87I	CYCGRG	1 cut(s)	1655
Aor51HI	AGCGCT	1 cut(s)	826
AoxI	GGCC	4 cut(s)	793, 1049, 1453, 1469
ApeKI	GCWGC	4 cut(s)	17, 69, 98, 890
ApoI	RAATTY	2 cut(s)	1558, 2036
ArsI	GACNNNNNNTTYG	2 cut(s)	1916, 1948
AsiGI	ACCGGT	1 cut(s)	556
Asp700I	GAANNNNTTC	2 cut(s)	197, 967
Asp718I	GGTACC	1 cut(s)	848
AspLEI	GCGC	3 cut(s)	7, 827, 1890
AspS9I	GGNCC	2 cut(s)	1050, 1366
AsuC2I	CCSGG	1 cut(s)	160
AsuHPI	GGTGA	7 cut(s)	128, 352, 454, 989, 1237, 1643, 1659
AsuII	TTCGAA	1 cut(s)	1572
AvaI	CYCGRG	1 cut(s)	1655
AvaII	GGWCC	1 cut(s)	1366
BaeGI	GKGCMC	1 cut(s)	1168
BalI	TGGCCA	2 cut(s)	795, 1471
BanI	GGYRCC	1 cut(s)	848
BanII	GRGCYC	2 cut(s)	1662, 1861
BarI	GAAGNNNNNNTAC	2 cut(s)	185, 217
BbsI	GAAGAC	1 cut(s)	390
Bbv12I	GWGCWC	3 cut(s)	1662, 1848, 1861
BbvI	GCAGC	4 cut(s)	4, 81, 110, 877
BccI	CCATC	5 cut(s)	144, 475, 1192, 1889, 1952
BceAI	ACGGC	3 cut(s)	22, 74, 732
BcgI	CGANNNNNNTGC	2 cut(s)	332, 366
BciT130I	CCWGG	7 cut(s)	186, 389, 1191, 1434, 1452, 1976, 2094
BciVI	GTATCC	1 cut(s)	1081
BclI	TGATCA	1 cut(s)	910
BcnI	CCSGG	1 cut(s)	160
BcoDI	GTCTC	4 cut(s)	549, 1580, 1754, 1995
BcuI	ACTAGT	3 cut(s)	647, 1283, 1646
BfaI	CTAG	4 cut(s)	648, 1200, 1284, 1647
BfmI	CTRYAG	1 cut(s)	60
BfoI	RGCGCY	1 cut(s)	828
BfuAI	ACCTGC	1 cut(s)	1303
BfuI	GTATCC	1 cut(s)	1081
BglI	GCCNNNNNGGC	2 cut(s)	95, 634
BglII	AGATCT	1 cut(s)	565
BisI	GCNGC	5 cut(s)	18, 70, 87, 99, 891
BlsI	GCNGC	5 cut(s)	19, 71, 88, 100, 892
Bme1390I	CCNGG	8 cut(s)	160, 186, 389, 1191, 1434, 1452, 1976, 2094
Bme18I	GGWCC	1 cut(s)	1366
BmeT110I	CYCGRG	1 cut(s)	1655
BmgT120I	GGNCC	2 cut(s)	1050, 1366
BmiI	GGNNCC	3 cut(s)	850, 1367, 2098
BmrFI	CCNGG	8 cut(s)	160, 186, 389, 1191, 1434, 1452, 1976, 2094
BmrI	ACTGGG	1 cut(s)	1372
BmsI	GCATC	4 cut(s)	685, 782, 1961, 1998
BmuI	ACTGGG	1 cut(s)	1372
BpiI	GAAGAC	1 cut(s)	390
BplI	GAGNNNNNCTC	2 cut(s)	1573, 1605
BpmI	CTGGAG	3 cut(s)	42, 676, 1434
Bpu14I	TTCGAA	1 cut(s)	1572
BpuEI	CTTGAG	1 cut(s)	1063
BpuMI	CCSGG	1 cut(s)	160
Bsa29I	ATCGAT	2 cut(s)	1874, 1956
BsaAI	YACGTR	1 cut(s)	1509
BsaHI	GRCGYC	1 cut(s)	84
BsaWI	WCCGGW	1 cut(s)	556
BsaXI	ACNNNNNCTCC	2 cut(s)	1848, 1878
Bsc4I	CCNNNNNNNGG	7 cut(s)	185, 394, 426, 1190, 1481, 2047, 2093
Bse118I	RCCGGY	2 cut(s)	94, 556
Bse1I	ACTGG	5 cut(s)	435, 850, 1307, 1367, 2041
Bse3DI	GCAATG	1 cut(s)	307
BseBI	CCWGG	7 cut(s)	186, 389, 1191, 1434, 1452, 1976, 2094
BseCI	ATCGAT	2 cut(s)	1874, 1956
BseGI	GGATG	7 cut(s)	80, 700, 1184, 1341, 1976, 1996, 2013
BseLI	CCNNNNNNNGG	7 cut(s)	185, 394, 426, 1190, 1481, 2047, 2093
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	3 cut(s)	560, 1568, 1782
BseNI	ACTGG	5 cut(s)	435, 850, 1307, 1367, 2041
BseRI	GAGGAG	3 cut(s)	729, 1534, 1594
BseSI	GKGCMC	1 cut(s)	1168
BseXI	GCAGC	4 cut(s)	4, 81, 110, 877
BseYI	CCCAGC	1 cut(s)	689
BsgI	GTGCAG	1 cut(s)	1008
Bsh1236I	CGCG	2 cut(s)	7, 1888
BshFI	GGCC	4 cut(s)	795, 1051, 1455, 1471
BshNI	GGYRCC	1 cut(s)	848
BshTI	ACCGGT	1 cut(s)	556
BshVI	ATCGAT	2 cut(s)	1874, 1956
BsiHKAI	GWGCWC	3 cut(s)	1662, 1848, 1861
BsiHKCI	CYCGRG	1 cut(s)	1655
BsiSI	CCGG	3 cut(s)	95, 159, 557
BslFI	GGGAC	2 cut(s)	1379, 1537
BslI	CCNNNNNNNGG	7 cut(s)	185, 394, 426, 1190, 1481, 2047, 2093
BsmAI	GTCTC	4 cut(s)	549, 1580, 1754, 1995
BsmFI	GGGAC	2 cut(s)	1379, 1537
BsmI	GAATGC	3 cut(s)	61, 893, 1111
BsnI	GGCC	4 cut(s)	795, 1051, 1455, 1471
BsoBI	CYCGRG	1 cut(s)	1655
Bsp119I	TTCGAA	1 cut(s)	1572
Bsp1286I	GDGCHC	4 cut(s)	1168, 1662, 1848, 1861
Bsp143I	GATC	7 cut(s)	291, 565, 910, 1177, 1288, 1871, 1953
Bsp19I	CCATGG	2 cut(s)	875, 2046
BspACI	CCGC	5 cut(s)	7, 45, 72, 87, 181
BspANI	GGCC	4 cut(s)	795, 1051, 1455, 1471
BspCNI	CTCAG	3 cut(s)	559, 1569, 1783
BspDI	ATCGAT	2 cut(s)	1874, 1956
BspFNI	CGCG	2 cut(s)	7, 1888
BspHI	TCATGA	1 cut(s)	1300
BspLI	GGNNCC	3 cut(s)	850, 1367, 2098
BspMI	ACCTGC	1 cut(s)	1303
BspPI	GGATC	3 cut(s)	286, 1172, 1283
BspT104I	TTCGAA	1 cut(s)	1572
BspT107I	GGYRCC	1 cut(s)	848
BsrDI	GCAATG	1 cut(s)	307
BsrFI	RCCGGY	2 cut(s)	94, 556
BsrI	ACTGG	5 cut(s)	435, 850, 1307, 1367, 2041
BssAI	RCCGGY	2 cut(s)	94, 556
BssMI	GATC	7 cut(s)	291, 565, 910, 1177, 1288, 1871, 1953
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	5 cut(s)	112, 875, 1130, 1250, 2046
Bst2UI	CCWGG	7 cut(s)	186, 389, 1191, 1434, 1452, 1976, 2094
Bst4CI	ACNGT	6 cut(s)	254, 488, 862, 1338, 1502, 1747
Bst6I	CTCTTC	3 cut(s)	992, 1154, 1763
BstACI	GRCGYC	1 cut(s)	84
BstAPI	GCANNNNNTGC	1 cut(s)	1971
BstBAI	YACGTR	1 cut(s)	1509
BstBI	TTCGAA	1 cut(s)	1572
BstC8I	GCNNGC	5 cut(s)	96, 150, 803, 823, 1109
BstDEI	CTNAG	4 cut(s)	546, 1155, 1577, 1791
BstDSI	CCRYGG	3 cut(s)	484, 875, 2046
BstEII	GGTNACC	1 cut(s)	1978
BstF5I	GGATG	7 cut(s)	80, 700, 1184, 1341, 1976, 1996, 2013
BstFNI	CGCG	2 cut(s)	7, 1888
BstH2I	RGCGCY	1 cut(s)	828
BstHHI	GCGC	3 cut(s)	7, 827, 1890
BstKTI	GATC	7 cut(s)	294, 568, 913, 1180, 1291, 1874, 1956
BstMAI	GTCTC	4 cut(s)	549, 1580, 1754, 1995
BstMBI	GATC	7 cut(s)	291, 565, 910, 1177, 1288, 1871, 1953
BstMWI	GCNNNNNNNGC	7 cut(s)	95, 450, 634, 695, 833, 1330, 1971
BstNI	CCWGG	7 cut(s)	186, 389, 1191, 1434, 1452, 1976, 2094
BstNSI	RCATGY	6 cut(s)	152, 544, 702, 805, 1107, 1525
BstPI	GGTNACC	1 cut(s)	1978
BstSCI	CCNGG	8 cut(s)	158, 184, 387, 1189, 1432, 1450, 1974, 2092
BstSFI	CTRYAG	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	1168
BstUI	CGCG	2 cut(s)	7, 1888
BstV1I	GCAGC	4 cut(s)	4, 81, 110, 877
BstV2I	GAAGAC	1 cut(s)	390
BstX2I	RGATCY	2 cut(s)	291, 565
BstXI	CCANNNNNNTGG	1 cut(s)	1433
BstYI	RGATCY	2 cut(s)	291, 565
Bsu15I	ATCGAT	2 cut(s)	1874, 1956
BsuI	GTATCC	1 cut(s)	1081
BsuRI	GGCC	4 cut(s)	795, 1051, 1455, 1471
BsuTUI	ATCGAT	2 cut(s)	1874, 1956
BtgI	CCRYGG	3 cut(s)	484, 875, 2046
BtsCI	GGATG	7 cut(s)	80, 700, 1184, 1341, 1976, 1996, 2013
BtsI	GCAGTG	2 cut(s)	768, 1972
BtsIMutI	CAGTG	3 cut(s)	768, 1507, 1972
BveI	ACCTGC	1 cut(s)	1303
Cac8I	GCNNGC	5 cut(s)	96, 150, 803, 823, 1109
CciI	TCATGA	1 cut(s)	1300
CfoI	GCGC	3 cut(s)	7, 827, 1890
Cfr10I	RCCGGY	2 cut(s)	94, 556
Cfr13I	GGNCC	2 cut(s)	1050, 1366
ClaI	ATCGAT	2 cut(s)	1874, 1956
CseI	GACGC	1 cut(s)	92
CsiI	ACCWGGT	1 cut(s)	387
CspAI	ACCGGT	1 cut(s)	556
DdeI	CTNAG	4 cut(s)	546, 1155, 1577, 1791
DpnI	GATC	7 cut(s)	293, 567, 912, 1179, 1290, 1873, 1955
DpnII	GATC	7 cut(s)	291, 565, 910, 1177, 1288, 1871, 1953
EaeI	YGGCCR	2 cut(s)	793, 1469
Eam1104I	CTCTTC	3 cut(s)	992, 1154, 1763
EarI	CTCTTC	3 cut(s)	992, 1154, 1763
Ecl136II	GAGCTC	2 cut(s)	1660, 1859
Eco130I	CCWWGG	5 cut(s)	112, 875, 1130, 1250, 2046
Eco147I	AGGCCT	1 cut(s)	1455
Eco24I	GRGCYC	2 cut(s)	1662, 1861
Eco32I	GATATC	1 cut(s)	1024
Eco47I	GGWCC	1 cut(s)	1366
Eco47III	AGCGCT	1 cut(s)	826
Eco53kI	GAGCTC	2 cut(s)	1660, 1859
Eco57I	CTGAAG	2 cut(s)	348, 1094
Eco88I	CYCGRG	1 cut(s)	1655
Eco91I	GGTNACC	1 cut(s)	1978
EcoICRI	GAGCTC	2 cut(s)	1660, 1859
EcoO65I	GGTNACC	1 cut(s)	1978
EcoRI	GAATTC	1 cut(s)	2036
EcoRII	CCWGG	7 cut(s)	184, 387, 1189, 1432, 1450, 1974, 2092
EcoRV	GATATC	1 cut(s)	1024
EcoT14I	CCWWGG	5 cut(s)	112, 875, 1130, 1250, 2046
EcoT22I	ATGCAT	1 cut(s)	700
EcoT38I	GRGCYC	2 cut(s)	1662, 1861
ErhI	CCWWGG	5 cut(s)	112, 875, 1130, 1250, 2046
FalI	AAGNNNNNCTT	2 cut(s)	623, 655
FaqI	GGGAC	2 cut(s)	1379, 1537
FauI	CCCGC	1 cut(s)	188
FauNDI	CATATG	1 cut(s)	238
FbaI	TGATCA	1 cut(s)	910
Fnu4HI	GCNGC	5 cut(s)	18, 70, 87, 99, 891
FokI	GGATG	7 cut(s)	87, 707, 1171, 1328, 1983, 2003, 2020
FriOI	GRGCYC	2 cut(s)	1662, 1861
Fsp4HI	GCNGC	5 cut(s)	18, 70, 87, 99, 891
FspBI	CTAG	4 cut(s)	648, 1200, 1284, 1647
GlaI	GCGC	3 cut(s)	6, 826, 1889
GluI	GCNGC	5 cut(s)	18, 70, 87, 99, 891
GsaI	CCCAGC	1 cut(s)	693
GsuI	CTGGAG	3 cut(s)	42, 676, 1434
HaeII	RGCGCY	1 cut(s)	828
HaeIII	GGCC	4 cut(s)	795, 1051, 1455, 1471
HapII	CCGG	3 cut(s)	95, 159, 557
HgaI	GACGC	1 cut(s)	92
HhaI	GCGC	3 cut(s)	7, 827, 1890
Hin1I	GRCGYC	1 cut(s)	84
Hin6I	GCGC	3 cut(s)	5, 825, 1888
HinP1I	GCGC	3 cut(s)	5, 825, 1888
HinfI	GANTC	9 cut(s)	492, 883, 957, 1238, 1491, 1550, 1588, 1632, 2089
HpaII	CCGG	3 cut(s)	95, 159, 557
HphI	GGTGA	7 cut(s)	128, 352, 454, 989, 1237, 1643, 1659
Hpy166II	GTNNAC	7 cut(s)	42, 172, 440, 858, 865, 1172, 1242
Hpy188III	TCNNGA	5 cut(s)	536, 563, 1277, 1301, 1358
Hpy8I	GTNNAC	7 cut(s)	42, 172, 440, 858, 865, 1172, 1242
HpyCH4III	ACNGT	6 cut(s)	254, 488, 862, 1338, 1502, 1747
HpyCH4IV	ACGT	5 cut(s)	174, 662, 1168, 1401, 1508
HpyF10VI	GCNNNNNNNGC	7 cut(s)	95, 450, 634, 695, 833, 1330, 1971
HpyF3I	CTNAG	4 cut(s)	546, 1155, 1577, 1791
HpySE526I	ACGT	5 cut(s)	174, 662, 1168, 1401, 1508
Hsp92I	GRCGYC	1 cut(s)	84
HspAI	GCGC	3 cut(s)	5, 825, 1888
KpnI	GGTACC	1 cut(s)	852
KroI	GCCGGC	1 cut(s)	94
KroNI	GCCGGC	1 cut(s)	96
Ksp22I	TGATCA	1 cut(s)	910
Kzo9I	GATC	7 cut(s)	291, 565, 910, 1177, 1288, 1871, 1953
LmnI	GCTCC	8 cut(s)	449, 1453, 1547, 1665, 1820, 1856, 1864, 2102
Lsp1109I	GCAGC	4 cut(s)	4, 81, 110, 877
LweI	GCATC	4 cut(s)	685, 782, 1961, 1998
MabI	ACCWGGT	1 cut(s)	387
MaeI	CTAG	4 cut(s)	648, 1200, 1284, 1647
MaeII	ACGT	5 cut(s)	174, 662, 1168, 1401, 1508
MaeIII	GTNAC	7 cut(s)	215, 373, 667, 1309, 1642, 1649, 1978
MalI	GATC	7 cut(s)	293, 567, 912, 1179, 1290, 1873, 1955
MboI	GATC	7 cut(s)	291, 565, 910, 1177, 1288, 1871, 1953
MboII	GAAGA	9 cut(s)	395, 416, 992, 1006, 1009, 1040, 1171, 1780, 1881
MflI	RGATCY	2 cut(s)	291, 565
MhlI	GDGCHC	4 cut(s)	1168, 1662, 1848, 1861
MlsI	TGGCCA	2 cut(s)	795, 1471
MluCI	AATT	5 cut(s)	277, 900, 1558, 1681, 2036
MluNI	TGGCCA	2 cut(s)	795, 1471
MlyI	GAGTC	6 cut(s)	892, 1247, 1500, 1559, 1582, 1641
MmeI	TCCRAC	3 cut(s)	984, 1174, 1846
Mox20I	TGGCCA	2 cut(s)	795, 1471
Mph1103I	ATGCAT	1 cut(s)	700
MroNI	GCCGGC	1 cut(s)	94
MroXI	GAANNNNTTC	2 cut(s)	197, 967
MscI	TGGCCA	2 cut(s)	795, 1471
MslI	CAYNNNNRTG	4 cut(s)	153, 950, 1731, 1841
Msp20I	TGGCCA	2 cut(s)	795, 1471
MspA1I	CMGCKG	2 cut(s)	72, 1753
MspI	CCGG	3 cut(s)	95, 159, 557
MspR9I	CCNGG	8 cut(s)	160, 186, 389, 1191, 1434, 1452, 1976, 2094
Mva1269I	GAATGC	3 cut(s)	61, 893, 1111
MvaI	CCWGG	7 cut(s)	186, 389, 1191, 1434, 1452, 1976, 2094
MvnI	CGCG	2 cut(s)	7, 1888
MwoI	GCNNNNNNNGC	7 cut(s)	95, 450, 634, 695, 833, 1330, 1971
NaeI	GCCGGC	1 cut(s)	96
NciI	CCSGG	1 cut(s)	160
NcoI	CCATGG	2 cut(s)	875, 2046
NdeI	CATATG	1 cut(s)	238
NdeII	GATC	7 cut(s)	291, 565, 910, 1177, 1288, 1871, 1953
NgoMIV	GCCGGC	1 cut(s)	94
NlaIV	GGNNCC	3 cut(s)	850, 1367, 2098
NmeAIII	GCCGAG	1 cut(s)	406
NmuCI	GTSAC	4 cut(s)	215, 373, 667, 1649
NsiI	ATGCAT	1 cut(s)	700
NspI	RCATGY	6 cut(s)	152, 544, 702, 805, 1107, 1525
NspV	TTCGAA	1 cut(s)	1572
PaeI	GCATGC	2 cut(s)	152, 805
PagI	TCATGA	1 cut(s)	1300
PaqCI	CACCTGC	1 cut(s)	1303
PasI	CCCWGGG	1 cut(s)	1190
PceI	AGGCCT	1 cut(s)	1455
PciI	ACATGT	1 cut(s)	540
PcsI	WCGNNNNNNNCGW	1 cut(s)	1032
PctI	GAATGC	3 cut(s)	61, 893, 1111
PdiI	GCCGGC	1 cut(s)	96
PdmI	GAANNNNTTC	2 cut(s)	197, 967
PfeI	GAWTC	3 cut(s)	492, 957, 2089
PflMI	CCANNNNNTGG	3 cut(s)	1190, 1481, 2047
PinAI	ACCGGT	1 cut(s)	556
PkrI	GCNGC	5 cut(s)	19, 71, 88, 100, 892
PleI	GAGTC	6 cut(s)	891, 1246, 1499, 1558, 1582, 1640
PpsI	GAGTC	6 cut(s)	891, 1246, 1499, 1558, 1582, 1640
Ppu21I	YACGTR	1 cut(s)	1509
PscI	ACATGT	1 cut(s)	540
Psp124BI	GAGCTC	2 cut(s)	1662, 1861
Psp1406I	AACGTT	1 cut(s)	1401
Psp6I	CCWGG	7 cut(s)	184, 387, 1189, 1432, 1450, 1974, 2092
PspEI	GGTNACC	1 cut(s)	1978
PspFI	CCCAGC	1 cut(s)	689
PspGI	CCWGG	7 cut(s)	184, 387, 1189, 1432, 1450, 1974, 2092
PspN4I	GGNNCC	3 cut(s)	850, 1367, 2098
PspPI	GGNCC	2 cut(s)	1050, 1366
PsrI	GAACNNNNNNTAC	2 cut(s)	1690, 1722
PsuI	RGATCY	2 cut(s)	291, 565
PvuII	CAGCTG	1 cut(s)	1753
RseI	CAYNNNNRTG	4 cut(s)	153, 950, 1731, 1841
SacI	GAGCTC	2 cut(s)	1662, 1861
SatI	GCNGC	5 cut(s)	18, 70, 87, 99, 891
Sau3AI	GATC	7 cut(s)	291, 565, 910, 1177, 1288, 1871, 1953
Sau96I	GGNCC	2 cut(s)	1050, 1366
SchI	GAGTC	6 cut(s)	892, 1247, 1500, 1559, 1582, 1641
ScrFI	CCNGG	8 cut(s)	160, 186, 389, 1191, 1434, 1452, 1976, 2094
SduI	GDGCHC	4 cut(s)	1168, 1662, 1848, 1861
SexAI	ACCWGGT	1 cut(s)	387
SfaNI	GCATC	4 cut(s)	685, 782, 1961, 1998
SfcI	CTRYAG	1 cut(s)	60
SfuI	TTCGAA	1 cut(s)	1572
SinI	GGWCC	1 cut(s)	1366
SmiMI	CAYNNNNRTG	4 cut(s)	153, 950, 1731, 1841
SmlI	CTYRAG	1 cut(s)	1042
SmoI	CTYRAG	1 cut(s)	1042
SpeI	ACTAGT	3 cut(s)	647, 1283, 1646
SphI	GCATGC	2 cut(s)	152, 805
Sse9I	AATT	5 cut(s)	277, 900, 1558, 1681, 2036
SseBI	AGGCCT	1 cut(s)	1455
SsiI	CCGC	5 cut(s)	7, 45, 72, 87, 181
SspMI	CTAG	4 cut(s)	648, 1200, 1284, 1647
SstI	GAGCTC	2 cut(s)	1662, 1861
StuI	AGGCCT	1 cut(s)	1455
StyD4I	CCNGG	8 cut(s)	158, 184, 387, 1189, 1432, 1450, 1974, 2092
StyI	CCWWGG	5 cut(s)	112, 875, 1130, 1250, 2046
TaaI	ACNGT	6 cut(s)	254, 488, 862, 1338, 1502, 1747
TaiI	ACGT	5 cut(s)	177, 665, 1171, 1404, 1511
TaqI	TCGA	8 cut(s)	619, 1026, 1572, 1605, 1766, 1874, 1935, 1956
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	5 cut(s)	277, 900, 1558, 1681, 2036
TatI	WGTACW	3 cut(s)	437, 864, 1616
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	3 cut(s)	492, 957, 2089
TscAI	CASTG	3 cut(s)	775, 1507, 1972
TseFI	GTSAC	4 cut(s)	215, 373, 667, 1649
TseI	GCWGC	4 cut(s)	17, 69, 98, 890
Tsp45I	GTSAC	4 cut(s)	215, 373, 667, 1649
TspDTI	ATGAA	9 cut(s)	609, 886, 935, 1209, 1317, 1330, 1424, 2053, 2094
TspGWI	ACGGA	3 cut(s)	40, 95, 1807
TspRI	CASTG	3 cut(s)	775, 1507, 1972
Van91I	CCANNNNNTGG	3 cut(s)	1190, 1481, 2047
VpaK11BI	GGWCC	1 cut(s)	1366
XapI	RAATTY	2 cut(s)	1558, 2036
XceI	RCATGY	6 cut(s)	152, 544, 702, 805, 1107, 1525
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1359
XmnI	GAANNNNTTC	2 cut(s)	197, 967
XspI	CTAG	4 cut(s)	648, 1200, 1284, 1647
Zsp2I	ATGCAT	1 cut(s)	700

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.