Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g24730 FvH4_2g24730 FvH4_2g24730 FvH4_5g06540 |
| malus_domestica | MD00G1056300.v1.1 MD05G1338500.v1.1 MD11G1297900.v1.1 |
| prunus_persica | Prupe.8G252300_v2.0.a1 |
| pyrus_communis | pycom02g21520 pycom03g21940 pycom03g21950 pycom05g12140 pycom11g26170 pycom16g06400 pycom16g24090 |
| rosa_chinensis | RchiOBHm_Chr6g0292551 |
| rosa_laevigata | RLG00000012010 |
| rosa_multiflora | Rmu_co8118566.1_g000001 Rmu_sc0000515.1_g000001 Rmu_sc0003486.1_g000005 Rmu_sc0004825.1_g000018 |
| rosa_roxburghii | Rroxscaffold_4G00318020 Rroxscaffold_7G00174940 |
| rosa_rugosa | Rorug06G0227900 |
| rosa_samantha | Rh5AG357200 Rh5DG382900 Rh6AG341000 Rh6AG341100 Rh6BG089400 Rh6BG348500 Rh6CG355300 Rh6CG355400 Rh6DG341100 Rh6DG341200 |
| rosa_wichuraiana | Rw6G029710 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1599 |
| Acc36I | ACCTGC | 1 cut(s) | 1867 |
| Acc65I | GGTACC | 1 cut(s) | 947 |
| AccB1I | GGYRCC | 1 cut(s) | 947 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 128 |
| AccI | GTMKAC | 1 cut(s) | 1144 |
| AciI | CCGC | 4 cut(s) | 52, 203, 269, 1292 |
| AclWI | GGATC | 6 cut(s) | 968, 981, 1283, 1446, 1459, 1986 |
| AcoI | YGGCCR | 3 cut(s) | 204, 1179, 1367 |
| AcsI | RAATTY | 1 cut(s) | 1937 |
| AcuI | CTGAAG | 2 cut(s) | 939, 1031 |
| AdeI | CACNNNGTG | 1 cut(s) | 128 |
| AfaI | GTAC | 6 cut(s) | 77, 94, 501, 601, 784, 949 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 87, 128, 1948 |
| AflII | CTTAAG | 1 cut(s) | 2029 |
| AflIII | ACRYGT | 1 cut(s) | 95 |
| AgsI | TTSAA | 6 cut(s) | 167, 536, 914, 1235, 1317, 1844 |
| AhlI | ACTAGT | 1 cut(s) | 587 |
| AjnI | CCWGG | 5 cut(s) | 628, 1181, 1348, 1455, 2002 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 870, 902 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 423, 455 |
| AluBI | AGCT | 9 cut(s) | 262, 275, 334, 670, 719, 917, 1037, 1561, 1822 |
| AluI | AGCT | 9 cut(s) | 262, 275, 334, 670, 719, 917, 1037, 1561, 1822 |
| Alw21I | GWGCWC | 4 cut(s) | 672, 1279, 1563, 1749 |
| Alw26I | GTCTC | 6 cut(s) | 126, 1129, 1481, 1655, 1688, 1896 |
| Alw44I | GTGCAC | 1 cut(s) | 1275 |
| AlwI | GGATC | 6 cut(s) | 968, 981, 1283, 1446, 1459, 1986 |
| ApaLI | GTGCAC | 1 cut(s) | 1275 |
| ApeKI | GCWGC | 3 cut(s) | 259, 745, 1760 |
| ApoI | RAATTY | 1 cut(s) | 1937 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1817, 1849 |
| AseI | ATTAAT | 1 cut(s) | 1202 |
| Asp718I | GGTACC | 1 cut(s) | 947 |
| AspLEI | GCGC | 2 cut(s) | 35, 1469 |
| AspS9I | GGNCC | 6 cut(s) | 819, 987, 1190, 1496, 1780, 2098 |
| AsuC2I | CCSGG | 1 cut(s) | 103 |
| AsuHPI | GGTGA | 3 cut(s) | 71, 858, 1560 |
| AvaII | GGWCC | 2 cut(s) | 819, 1780 |
| BaeGI | GKGCMC | 1 cut(s) | 1279 |
| BalI | TGGCCA | 2 cut(s) | 1181, 1369 |
| BamHI | GGATCC | 2 cut(s) | 973, 1451 |
| BanI | GGYRCC | 1 cut(s) | 947 |
| BanII | GRGCYC | 2 cut(s) | 672, 1563 |
| Bbv12I | GWGCWC | 4 cut(s) | 672, 1279, 1563, 1749 |
| BbvCI | CCTCAGC | 1 cut(s) | 456 |
| BbvI | GCAGC | 3 cut(s) | 271, 757, 1772 |
| BccI | CCATC | 7 cut(s) | 367, 415, 1378, 1516, 1790, 1853, 1866 |
| BceAI | ACGGC | 3 cut(s) | 111, 672, 1204 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1241, 1275 |
| BciT130I | CCWGG | 5 cut(s) | 630, 1183, 1350, 1457, 2004 |
| BciVI | GTATCC | 1 cut(s) | 1018 |
| BclI | TGATCA | 1 cut(s) | 850 |
| BcnI | CCSGG | 1 cut(s) | 103 |
| BcoDI | GTCTC | 6 cut(s) | 126, 1129, 1481, 1655, 1688, 1896 |
| BcuI | ACTAGT | 1 cut(s) | 587 |
| BfaI | CTAG | 3 cut(s) | 588, 1271, 1587 |
| BfmI | CTRYAG | 1 cut(s) | 1083 |
| BfoI | RGCGCY | 2 cut(s) | 36, 1470 |
| BfrI | CTTAAG | 1 cut(s) | 2029 |
| BfuAI | ACCTGC | 1 cut(s) | 1867 |
| BfuI | GTATCC | 1 cut(s) | 1018 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 574 |
| BisI | GCNGC | 4 cut(s) | 204, 260, 746, 1761 |
| BlsI | GCNGC | 4 cut(s) | 205, 261, 747, 1762 |
| Bme1390I | CCNGG | 6 cut(s) | 103, 630, 1183, 1350, 1457, 2004 |
| Bme18I | GGWCC | 2 cut(s) | 819, 1780 |
| BmgT120I | GGNCC | 6 cut(s) | 819, 987, 1190, 1496, 1780, 2098 |
| BmiI | GGNNCC | 5 cut(s) | 790, 949, 975, 1431, 1453 |
| BmrFI | CCNGG | 6 cut(s) | 103, 630, 1183, 1350, 1457, 2004 |
| BmsI | GCATC | 4 cut(s) | 625, 762, 1899, 2100 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1474, 1506 |
| BpmI | CTGGAG | 2 cut(s) | 497, 1332 |
| Bpu10I | CCTNAGC | 1 cut(s) | 456 |
| BpuEI | CTTGAG | 3 cut(s) | 138, 1476, 1733 |
| BpuMI | CCSGG | 1 cut(s) | 103 |
| BsaAI | YACGTR | 1 cut(s) | 1888 |
| BsaBI | GATNNNNATC | 1 cut(s) | 972 |
| BsaI | GGTCTC | 1 cut(s) | 1129 |
| BsaJI | CCNNGG | 9 cut(s) | 55, 127, 424, 559, 629, 815, 1067, 1455, 1765 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 123, 153 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 87, 128, 1948 |
| Bse1I | ACTGG | 4 cut(s) | 497, 790, 822, 1329 |
| Bse3DI | GCAATG | 1 cut(s) | 1025 |
| Bse8I | GATNNNNATC | 1 cut(s) | 972 |
| BseBI | CCWGG | 5 cut(s) | 630, 1183, 1350, 1457, 2004 |
| BseDI | CCNNGG | 9 cut(s) | 55, 127, 424, 559, 629, 815, 1067, 1455, 1765 |
| BseGI | GGATG | 6 cut(s) | 352, 640, 753, 897, 1877, 2021 |
| BseJI | GATNNNNATC | 1 cut(s) | 972 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 87, 128, 1948 |
| BseMI | GCAATG | 1 cut(s) | 1025 |
| BseMII | CTCAG | 6 cut(s) | 311, 312, 447, 1640, 1683, 1809 |
| BseNI | ACTGG | 4 cut(s) | 497, 790, 822, 1329 |
| BseRI | GAGGAG | 4 cut(s) | 473, 669, 1435, 1495 |
| BseSI | GKGCMC | 1 cut(s) | 1279 |
| BseXI | GCAGC | 3 cut(s) | 271, 757, 1772 |
| BsgI | GTGCAG | 2 cut(s) | 278, 948 |
| BshNI | GGYRCC | 1 cut(s) | 947 |
| BsiHKAI | GWGCWC | 4 cut(s) | 672, 1279, 1563, 1749 |
| BsiSI | CCGG | 1 cut(s) | 102 |
| BslFI | GGGAC | 2 cut(s) | 104, 1106 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 87, 128, 1948 |
| BsmAI | GTCTC | 6 cut(s) | 126, 1129, 1481, 1655, 1688, 1896 |
| BsmFI | GGGAC | 2 cut(s) | 104, 1106 |
| BsmI | GAATGC | 1 cut(s) | 1048 |
| Bso31I | GGTCTC | 1 cut(s) | 1129 |
| Bsp1286I | GDGCHC | 4 cut(s) | 672, 1279, 1563, 1749 |
| Bsp1407I | TGTACA | 1 cut(s) | 75 |
| Bsp143I | GATC | 7 cut(s) | 850, 973, 1150, 1288, 1451, 1772, 1978 |
| Bsp19I | CCATGG | 1 cut(s) | 424 |
| BspACI | CCGC | 4 cut(s) | 52, 203, 269, 1292 |
| BspCNI | CTCAG | 6 cut(s) | 310, 313, 448, 1639, 1684, 1810 |
| BspLI | GGNNCC | 5 cut(s) | 790, 949, 975, 1431, 1453 |
| BspMAI | CTGCAG | 1 cut(s) | 1087 |
| BspMI | ACCTGC | 1 cut(s) | 1867 |
| BspPI | GGATC | 6 cut(s) | 968, 981, 1283, 1446, 1459, 1986 |
| BspT107I | GGYRCC | 1 cut(s) | 947 |
| BspTI | CTTAAG | 1 cut(s) | 2029 |
| BspTNI | GGTCTC | 1 cut(s) | 1129 |
| BsrDI | GCAATG | 1 cut(s) | 1025 |
| BsrGI | TGTACA | 1 cut(s) | 75 |
| BsrI | ACTGG | 4 cut(s) | 497, 790, 822, 1329 |
| BssECI | CCNNGG | 9 cut(s) | 55, 127, 424, 559, 629, 815, 1067, 1455, 1765 |
| BssMI | GATC | 7 cut(s) | 850, 973, 1150, 1288, 1451, 1772, 1978 |
| BssNAI | GTATAC | 1 cut(s) | 1145 |
| BssT1I | CCWWGG | 5 cut(s) | 55, 424, 815, 1067, 1765 |
| Bst1107I | GTATAC | 1 cut(s) | 1145 |
| Bst2UI | CCWGG | 5 cut(s) | 630, 1183, 1350, 1457, 2004 |
| Bst4CI | ACNGT | 8 cut(s) | 197, 560, 802, 1377, 1403, 1550, 1648, 1994 |
| Bst6I | CTCTTC | 2 cut(s) | 929, 1097 |
| BstAFI | CTTAAG | 1 cut(s) | 2029 |
| BstAUI | TGTACA | 1 cut(s) | 75 |
| BstBAI | YACGTR | 1 cut(s) | 1888 |
| BstC8I | GCNNGC | 3 cut(s) | 743, 1083, 2089 |
| BstDEI | CTNAG | 8 cut(s) | 297, 321, 335, 456, 1626, 1668, 1692, 1818 |
| BstDSI | CCRYGG | 3 cut(s) | 127, 424, 559 |
| BstEII | GGTNACC | 1 cut(s) | 1879 |
| BstF5I | GGATG | 6 cut(s) | 352, 640, 753, 897, 1877, 2021 |
| BstH2I | RGCGCY | 2 cut(s) | 36, 1470 |
| BstHHI | GCGC | 2 cut(s) | 35, 1469 |
| BstKTI | GATC | 7 cut(s) | 853, 976, 1153, 1291, 1454, 1775, 1981 |
| BstMAI | GTCTC | 6 cut(s) | 126, 1129, 1481, 1655, 1688, 1896 |
| BstMBI | GATC | 7 cut(s) | 850, 973, 1150, 1288, 1451, 1772, 1978 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 331, 574, 773 |
| BstNI | CCWGG | 5 cut(s) | 630, 1183, 1350, 1457, 2004 |
| BstNSI | RCATGY | 7 cut(s) | 99, 387, 455, 642, 745, 1262, 1426 |
| BstPI | GGTNACC | 1 cut(s) | 1879 |
| BstSCI | CCNGG | 6 cut(s) | 101, 628, 1181, 1348, 1455, 2002 |
| BstSFI | CTRYAG | 1 cut(s) | 1083 |
| BstSLI | GKGCMC | 1 cut(s) | 1279 |
| BstV1I | GCAGC | 3 cut(s) | 271, 757, 1772 |
| BstX2I | RGATCY | 2 cut(s) | 973, 1451 |
| BstYI | RGATCY | 2 cut(s) | 973, 1451 |
| BstZ17I | GTATAC | 1 cut(s) | 1145 |
| BsuI | GTATCC | 1 cut(s) | 1018 |
| BtgI | CCRYGG | 3 cut(s) | 127, 424, 559 |
| BtsCI | GGATG | 6 cut(s) | 352, 640, 753, 897, 1877, 2021 |
| BtsI | GCAGTG | 1 cut(s) | 1873 |
| BtsIMutI | CAGTG | 5 cut(s) | 22, 1336, 1408, 1782, 1873 |
| BveI | ACCTGC | 1 cut(s) | 1867 |
| Cac8I | GCNNGC | 3 cut(s) | 743, 1083, 2089 |
| CfoI | GCGC | 2 cut(s) | 35, 1469 |
| Cfr13I | GGNCC | 6 cut(s) | 819, 987, 1190, 1496, 1780, 2098 |
| Csp6I | GTAC | 6 cut(s) | 76, 93, 500, 600, 783, 948 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 761, 796, 1570, 1605 |
| CviQI | GTAC | 6 cut(s) | 76, 93, 500, 600, 783, 948 |
| DdeI | CTNAG | 8 cut(s) | 297, 321, 335, 456, 1626, 1668, 1692, 1818 |
| DpnI | GATC | 7 cut(s) | 852, 975, 1152, 1290, 1453, 1774, 1980 |
| DpnII | GATC | 7 cut(s) | 850, 973, 1150, 1288, 1451, 1772, 1978 |
| DraIII | CACNNNGTG | 1 cut(s) | 128 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1599 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1599 |
| EaeI | YGGCCR | 3 cut(s) | 204, 1179, 1367 |
| Eam1104I | CTCTTC | 2 cut(s) | 929, 1097 |
| EarI | CTCTTC | 2 cut(s) | 929, 1097 |
| EciI | GGCGGA | 1 cut(s) | 284 |
| Ecl136II | GAGCTC | 2 cut(s) | 670, 1561 |
| Eco130I | CCWWGG | 5 cut(s) | 55, 424, 815, 1067, 1765 |
| Eco147I | AGGCCT | 1 cut(s) | 2087 |
| Eco24I | GRGCYC | 2 cut(s) | 672, 1563 |
| Eco31I | GGTCTC | 1 cut(s) | 1129 |
| Eco47I | GGWCC | 2 cut(s) | 819, 1780 |
| Eco53kI | GAGCTC | 2 cut(s) | 670, 1561 |
| Eco57I | CTGAAG | 2 cut(s) | 939, 1031 |
| Eco91I | GGTNACC | 1 cut(s) | 1879 |
| EcoICRI | GAGCTC | 2 cut(s) | 670, 1561 |
| EcoO65I | GGTNACC | 1 cut(s) | 1879 |
| EcoRI | GAATTC | 1 cut(s) | 1937 |
| EcoRII | CCWGG | 5 cut(s) | 628, 1181, 1348, 1455, 2002 |
| EcoT14I | CCWWGG | 5 cut(s) | 55, 424, 815, 1067, 1765 |
| EcoT22I | ATGCAT | 1 cut(s) | 640 |
| EcoT38I | GRGCYC | 2 cut(s) | 672, 1563 |
| ErhI | CCWWGG | 5 cut(s) | 55, 424, 815, 1067, 1765 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 563, 595, 2023, 2055 |
| FaqI | GGGAC | 2 cut(s) | 104, 1106 |
| FauNDI | CATATG | 2 cut(s) | 181, 847 |
| FbaI | TGATCA | 1 cut(s) | 850 |
| FblI | GTMKAC | 1 cut(s) | 1144 |
| Fnu4HI | GCNGC | 4 cut(s) | 204, 260, 746, 1761 |
| FokI | GGATG | 6 cut(s) | 359, 647, 740, 904, 1884, 2008 |
| FriOI | GRGCYC | 2 cut(s) | 672, 1563 |
| Fsp4HI | GCNGC | 4 cut(s) | 204, 260, 746, 1761 |
| FspBI | CTAG | 3 cut(s) | 588, 1271, 1587 |
| GlaI | GCGC | 2 cut(s) | 34, 1468 |
| GluI | GCNGC | 4 cut(s) | 204, 260, 746, 1761 |
| GsuI | CTGGAG | 2 cut(s) | 497, 1332 |
| HaeII | RGCGCY | 2 cut(s) | 36, 1470 |
| HapII | CCGG | 1 cut(s) | 102 |
| HhaI | GCGC | 2 cut(s) | 35, 1469 |
| Hin6I | GCGC | 2 cut(s) | 33, 1467 |
| HinP1I | GCGC | 2 cut(s) | 33, 1467 |
| HincII | GTYRAC | 2 cut(s) | 46, 1399 |
| HindII | GTYRAC | 2 cut(s) | 46, 1399 |
| HinfI | GANTC | 8 cut(s) | 235, 432, 897, 1088, 1345, 1489, 1533, 1999 |
| HpaI | GTTAAC | 1 cut(s) | 46 |
| HpaII | CCGG | 1 cut(s) | 102 |
| HphI | GGTGA | 3 cut(s) | 71, 858, 1560 |
| Hpy188III | TCNNGA | 4 cut(s) | 476, 1241, 1449, 1982 |
| HpyAV | CCTTC | 7 cut(s) | 778, 938, 1006, 1575, 1838, 1842, 1892 |
| HpyCH4III | ACNGT | 8 cut(s) | 197, 560, 802, 1377, 1403, 1550, 1648, 1994 |
| HpyCH4IV | ACGT | 1 cut(s) | 1887 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 331, 574, 773 |
| HpyF3I | CTNAG | 8 cut(s) | 297, 321, 335, 456, 1626, 1668, 1692, 1818 |
| HpySE526I | ACGT | 1 cut(s) | 1887 |
| HspAI | GCGC | 2 cut(s) | 33, 1467 |
| KpnI | GGTACC | 1 cut(s) | 951 |
| Ksp22I | TGATCA | 1 cut(s) | 850 |
| KspAI | GTTAAC | 1 cut(s) | 46 |
| Kzo9I | GATC | 7 cut(s) | 850, 973, 1150, 1288, 1451, 1772, 1978 |
| LmnI | GCTCC | 6 cut(s) | 22, 361, 675, 1558, 1566, 1757 |
| Lsp1109I | GCAGC | 3 cut(s) | 271, 757, 1772 |
| LweI | GCATC | 4 cut(s) | 625, 762, 1899, 2100 |
| MaeI | CTAG | 3 cut(s) | 588, 1271, 1587 |
| MaeII | ACGT | 1 cut(s) | 1887 |
| MaeIII | GTNAC | 4 cut(s) | 316, 607, 1550, 1879 |
| MalI | GATC | 7 cut(s) | 852, 975, 1152, 1290, 1453, 1774, 1980 |
| MboI | GATC | 7 cut(s) | 850, 973, 1150, 1288, 1451, 1772, 1978 |
| MboII | GAAGA | 5 cut(s) | 932, 946, 1114, 1782, 2031 |
| MflI | RGATCY | 2 cut(s) | 973, 1451 |
| MhlI | GDGCHC | 4 cut(s) | 672, 1279, 1563, 1749 |
| MlsI | TGGCCA | 2 cut(s) | 1181, 1369 |
| MluCI | AATT | 7 cut(s) | 220, 840, 1460, 1537, 1582, 1620, 1937 |
| MluNI | TGGCCA | 2 cut(s) | 1181, 1369 |
| MlyI | GAGTC | 3 cut(s) | 1339, 1483, 1542 |
| MmeI | TCCRAC | 2 cut(s) | 575, 1675 |
| Mox20I | TGGCCA | 2 cut(s) | 1181, 1369 |
| Mph1103I | ATGCAT | 1 cut(s) | 640 |
| MscI | TGGCCA | 2 cut(s) | 1181, 1369 |
| MseI | TTAA | 7 cut(s) | 45, 252, 963, 1202, 1463, 1598, 2030 |
| MslI | CAYNNNNRTG | 4 cut(s) | 282, 758, 1263, 1742 |
| Msp20I | TGGCCA | 2 cut(s) | 1181, 1369 |
| MspCI | CTTAAG | 1 cut(s) | 2029 |
| MspI | CCGG | 1 cut(s) | 102 |
| MspR9I | CCNGG | 6 cut(s) | 103, 630, 1183, 1350, 1457, 2004 |
| Mva1269I | GAATGC | 1 cut(s) | 1048 |
| MvaI | CCWGG | 5 cut(s) | 630, 1183, 1350, 1457, 2004 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 331, 574, 773 |
| NciI | CCSGG | 1 cut(s) | 103 |
| NcoI | CCATGG | 1 cut(s) | 424 |
| NdeI | CATATG | 2 cut(s) | 181, 847 |
| NdeII | GATC | 7 cut(s) | 850, 973, 1150, 1288, 1451, 1772, 1978 |
| NlaIV | GGNNCC | 5 cut(s) | 790, 949, 975, 1431, 1453 |
| NmuCI | GTSAC | 3 cut(s) | 316, 607, 1550 |
| NsiI | ATGCAT | 1 cut(s) | 640 |
| NspI | RCATGY | 7 cut(s) | 99, 387, 455, 642, 745, 1262, 1426 |
| PaeI | GCATGC | 1 cut(s) | 745 |
| PceI | AGGCCT | 1 cut(s) | 2087 |
| PciI | ACATGT | 1 cut(s) | 95 |
| PctI | GAATGC | 1 cut(s) | 1048 |
| PfeI | GAWTC | 5 cut(s) | 235, 432, 897, 1088, 1999 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 128 |
| PkrI | GCNGC | 4 cut(s) | 205, 261, 747, 1762 |
| PleI | GAGTC | 3 cut(s) | 1339, 1483, 1541 |
| PpsI | GAGTC | 3 cut(s) | 1339, 1483, 1541 |
| Ppu21I | YACGTR | 1 cut(s) | 1888 |
| PscI | ACATGT | 1 cut(s) | 95 |
| PshBI | ATTAAT | 1 cut(s) | 1202 |
| Psp124BI | GAGCTC | 2 cut(s) | 672, 1563 |
| Psp6I | CCWGG | 5 cut(s) | 628, 1181, 1348, 1455, 2002 |
| PspEI | GGTNACC | 1 cut(s) | 1879 |
| PspGI | CCWGG | 5 cut(s) | 628, 1181, 1348, 1455, 2002 |
| PspN4I | GGNNCC | 5 cut(s) | 790, 949, 975, 1431, 1453 |
| PspPI | GGNCC | 6 cut(s) | 819, 987, 1190, 1496, 1780, 2098 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 781, 813 |
| PstI | CTGCAG | 1 cut(s) | 1087 |
| PsuI | RGATCY | 2 cut(s) | 973, 1451 |
| RsaI | GTAC | 6 cut(s) | 77, 94, 501, 601, 784, 949 |
| RsaNI | GTAC | 6 cut(s) | 76, 93, 500, 600, 783, 948 |
| RseI | CAYNNNNRTG | 4 cut(s) | 282, 758, 1263, 1742 |
| SacI | GAGCTC | 2 cut(s) | 672, 1563 |
| SaqAI | TTAA | 7 cut(s) | 45, 252, 963, 1202, 1463, 1598, 2030 |
| SatI | GCNGC | 4 cut(s) | 204, 260, 746, 1761 |
| Sau3AI | GATC | 7 cut(s) | 850, 973, 1150, 1288, 1451, 1772, 1978 |
| Sau96I | GGNCC | 6 cut(s) | 819, 987, 1190, 1496, 1780, 2098 |
| SchI | GAGTC | 3 cut(s) | 1339, 1483, 1542 |
| ScrFI | CCNGG | 6 cut(s) | 103, 630, 1183, 1350, 1457, 2004 |
| SduI | GDGCHC | 4 cut(s) | 672, 1279, 1563, 1749 |
| SfaNI | GCATC | 4 cut(s) | 625, 762, 1899, 2100 |
| SfcI | CTRYAG | 1 cut(s) | 1083 |
| SinI | GGWCC | 2 cut(s) | 819, 1780 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 282, 758, 1263, 1742 |
| SmlI | CTYRAG | 4 cut(s) | 153, 1491, 1748, 2029 |
| SmoI | CTYRAG | 4 cut(s) | 153, 1491, 1748, 2029 |
| SpeI | ACTAGT | 1 cut(s) | 587 |
| SphI | GCATGC | 1 cut(s) | 745 |
| Sse9I | AATT | 7 cut(s) | 220, 840, 1460, 1537, 1582, 1620, 1937 |
| SseBI | AGGCCT | 1 cut(s) | 2087 |
| SsiI | CCGC | 4 cut(s) | 52, 203, 269, 1292 |
| SspI | AATATT | 1 cut(s) | 881 |
| SspMI | CTAG | 3 cut(s) | 588, 1271, 1587 |
| SstI | GAGCTC | 2 cut(s) | 672, 1563 |
| StuI | AGGCCT | 1 cut(s) | 2087 |
| StyD4I | CCNGG | 6 cut(s) | 101, 628, 1181, 1348, 1455, 2002 |
| StyI | CCWWGG | 5 cut(s) | 55, 424, 815, 1067, 1765 |
| TaaI | ACNGT | 8 cut(s) | 197, 560, 802, 1377, 1403, 1550, 1648, 1994 |
| TaiI | ACGT | 1 cut(s) | 1890 |
| TaqI | TCGA | 2 cut(s) | 1836, 1989 |
| TasI | AATT | 7 cut(s) | 220, 840, 1460, 1537, 1582, 1620, 1937 |
| TatI | WGTACW | 4 cut(s) | 75, 499, 599, 782 |
| TauI | GCSGC | 1 cut(s) | 206 |
| TfiI | GAWTC | 5 cut(s) | 235, 432, 897, 1088, 1999 |
| Tru1I | TTAA | 7 cut(s) | 45, 252, 963, 1202, 1463, 1598, 2030 |
| Tru9I | TTAA | 7 cut(s) | 45, 252, 963, 1202, 1463, 1598, 2030 |
| TscAI | CASTG | 5 cut(s) | 22, 1336, 1408, 1782, 1873 |
| TseFI | GTSAC | 3 cut(s) | 316, 607, 1550 |
| TseI | GCWGC | 3 cut(s) | 259, 745, 1760 |
| Tsp45I | GTSAC | 3 cut(s) | 316, 607, 1550 |
| TspGWI | ACGGA | 1 cut(s) | 662 |
| TspRI | CASTG | 5 cut(s) | 22, 1336, 1408, 1782, 1873 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 128 |
| Vha464I | CTTAAG | 1 cut(s) | 2029 |
| VneI | GTGCAC | 1 cut(s) | 1275 |
| VpaK11BI | GGWCC | 2 cut(s) | 819, 1780 |
| VspI | ATTAAT | 1 cut(s) | 1202 |
| XapI | RAATTY | 1 cut(s) | 1937 |
| XceI | RCATGY | 7 cut(s) | 99, 387, 455, 642, 745, 1262, 1426 |
| XmiI | GTMKAC | 1 cut(s) | 1144 |
| XspI | CTAG | 3 cut(s) | 588, 1271, 1587 |
| Zsp2I | ATGCAT | 1 cut(s) | 640 |