Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003486.1

Orthogroup ID

OG0003688

Physical Location & Seq

Genomic Coordinates Reverse (-)

19098 .. 19530

Gene Structure 433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003486.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atggttgtgctagttttgcagaggagaaatggagagctccgtgttggcatacactgtgcgaccaaaagacaagacaatgcaacaacttcactcatttgtggcaatagcatgcagcatggcatccttgcgaatgctttccatgccatttctactggaaccatgtttaccgtgtactatcgcccttggaccagtcctgtgccatttccaaggtttgagaattataaaaaagaaaaggtagagaccctttataagcgagaggtaggtcgaggcctccatggcggccactattggcctagttccagatttgggtgttggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

105

Amino Acids

12.06

Weight (kDa)

9.88

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24730 FvH4_2g24730 FvH4_2g24730 FvH4_5g06540
malus_domestica	MD00G1056300.v1.1 MD05G1338500.v1.1 MD11G1297900.v1.1
prunus_persica	Prupe.8G252300_v2.0.a1
pyrus_communis	pycom02g21520 pycom03g21940 pycom03g21950 pycom05g12140 pycom11g26170 pycom16g06400 pycom16g24090
rosa_chinensis	RchiOBHm_Chr6g0292551
rosa_laevigata	RLG00000012010
rosa_multiflora	Rmu_co8118566.1_g000001 Rmu_sc0000515.1_g000001 Rmu_sc0003486.1_g000005 Rmu_sc0004825.1_g000018
rosa_roxburghii	Rroxscaffold_4G00318020 Rroxscaffold_7G00174940
rosa_rugosa	Rorug06G0227900
rosa_samantha	Rh5AG357200 Rh5DG382900 Rh6AG341000 Rh6AG341100 Rh6BG089400 Rh6BG348500 Rh6CG355300 Rh6CG355400 Rh6DG341100 Rh6DG341200
rosa_wichuraiana	Rw6G029710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	222, 249
AciI	CCGC	1 cut(s)	279
AcoI	YGGCCR	1 cut(s)	280
AfaI	GTAC	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	306
AluBI	AGCT	1 cut(s)	37
AluI	AGCT	1 cut(s)	37
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	233
AoxI	GGCC	3 cut(s)	268, 280, 290
ApeKI	GCWGC	1 cut(s)	112
Asp700I	GAANNNNTTC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	186
AvaII	GGWCC	1 cut(s)	186
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	1 cut(s)	124
BcoDI	GTCTC	1 cut(s)	233
BfaI	CTAG	2 cut(s)	11, 294
BglI	GCCNNNNNGGC	1 cut(s)	276
BisI	GCNGC	2 cut(s)	113, 280
BlsI	GCNGC	2 cut(s)	114, 281
Bme18I	GGWCC	1 cut(s)	186
BmgT120I	GGNCC	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	157
BmsI	GCATC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	3 cut(s)	182, 206, 274
Bsc4I	CCNNNNNNNGG	1 cut(s)	306
Bse1I	ACTGG	2 cut(s)	157, 189
BseDI	CCNNGG	3 cut(s)	182, 206, 274
BseGI	GGATG	1 cut(s)	120
BseLI	CCNNNNNNNGG	1 cut(s)	306
BseNI	ACTGG	2 cut(s)	157, 189
BseRI	GAGGAG	1 cut(s)	37
BseXI	GCAGC	1 cut(s)	124
BshFI	GGCC	3 cut(s)	270, 282, 292
BsiHKAI	GWGCWC	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	306
BsmAI	GTCTC	1 cut(s)	233
BsmI	GAATGC	1 cut(s)	136
BsnI	GGCC	3 cut(s)	270, 282, 292
Bso31I	GGTCTC	1 cut(s)	233
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp19I	CCATGG	1 cut(s)	274
BspACI	CCGC	1 cut(s)	279
BspANI	GGCC	3 cut(s)	270, 282, 292
BspLI	GGNNCC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	233
BsrI	ACTGG	2 cut(s)	157, 189
BssECI	CCNNGG	3 cut(s)	182, 206, 274
BssT1I	CCWWGG	3 cut(s)	182, 206, 274
Bst4CI	ACNGT	2 cut(s)	56, 169
BstC8I	GCNNGC	1 cut(s)	110
BstDSI	CCRYGG	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	120
BstMAI	GTCTC	1 cut(s)	233
BstMWI	GCNNNNNNNGC	3 cut(s)	16, 140, 276
BstNSI	RCATGY	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	124
BsuRI	GGCC	3 cut(s)	270, 282, 292
BtgI	CCRYGG	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	5 cut(s)	109, 116, 140, 160, 275
CviJI	RGCY	4 cut(s)	37, 270, 282, 292
CviKI_1	RGCY	4 cut(s)	37, 270, 282, 292
CviQI	GTAC	1 cut(s)	172
EaeI	YGGCCR	1 cut(s)	280
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	3 cut(s)	182, 206, 274
Eco147I	AGGCCT	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	186
Eco53kI	GAGCTC	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	37
EcoT14I	CCWWGG	3 cut(s)	182, 206, 274
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	3 cut(s)	182, 206, 274
FaeI	CATG	5 cut(s)	112, 119, 143, 163, 278
FaiI	YATR	8 cut(s)	50, 110, 117, 141, 161, 222, 249, 276
FatI	CATG	5 cut(s)	108, 115, 139, 159, 274
Fnu4HI	GCNGC	2 cut(s)	113, 280
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	2 cut(s)	113, 280
FspBI	CTAG	2 cut(s)	11, 294
GluI	GCNGC	2 cut(s)	113, 280
HaeIII	GGCC	3 cut(s)	270, 282, 292
Hin1II	CATG	5 cut(s)	112, 119, 143, 163, 278
Hpy166II	GTNNAC	2 cut(s)	165, 172
Hpy188III	TCNNGA	1 cut(s)	300
Hpy8I	GTNNAC	2 cut(s)	165, 172
HpyCH4III	ACNGT	2 cut(s)	56, 169
HpyCH4V	TGCA	3 cut(s)	19, 80, 112
HpyF10VI	GCNNNNNNNGC	3 cut(s)	16, 140, 276
Hsp92II	CATG	5 cut(s)	112, 119, 143, 163, 278
LmnI	GCTCC	1 cut(s)	42
LpnPI	CCDG	4 cut(s)	138, 202, 207, 313
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	2 cut(s)	11, 294
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	1 cut(s)	217
MnlI	CCTC	4 cut(s)	15, 250, 260, 281
MroXI	GAANNNNTTC	1 cut(s)	134
Mva1269I	GAATGC	1 cut(s)	136
MwoI	GCNNNNNNNGC	3 cut(s)	16, 140, 276
NcoI	CCATGG	1 cut(s)	274
NlaIII	CATG	5 cut(s)	112, 119, 143, 163, 278
NlaIV	GGNNCC	1 cut(s)	157
NspI	RCATGY	1 cut(s)	112
PaeI	GCATGC	1 cut(s)	112
PceI	AGGCCT	1 cut(s)	270
PctI	GAATGC	1 cut(s)	136
PdmI	GAANNNNTTC	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	114, 281
PsiI	TTATAA	2 cut(s)	222, 249
Psp124BI	GAGCTC	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	157
PspPI	GGNCC	1 cut(s)	186
PsrI	GAACNNNNNNTAC	2 cut(s)	148, 180
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SacI	GAGCTC	1 cut(s)	39
SatI	GCNGC	2 cut(s)	113, 280
Sau96I	GGNCC	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	5 cut(s)	39, 212, 237, 261, 265
SfaNI	GCATC	1 cut(s)	129
SinI	GGWCC	1 cut(s)	186
SphI	GCATGC	1 cut(s)	112
Sse9I	AATT	1 cut(s)	217
SseBI	AGGCCT	1 cut(s)	270
SsiI	CCGC	1 cut(s)	279
SspMI	CTAG	2 cut(s)	11, 294
SstI	GAGCTC	1 cut(s)	39
StuI	AGGCCT	1 cut(s)	270
StyI	CCWWGG	3 cut(s)	182, 206, 274
TaaI	ACNGT	2 cut(s)	56, 169
TaqI	TCGA	1 cut(s)	265
TasI	AATT	1 cut(s)	217
TatI	WGTACW	1 cut(s)	171
TauI	GCSGC	1 cut(s)	282
TscAI	CASTG	1 cut(s)	59
TseI	GCWGC	1 cut(s)	112
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	186
XceI	RCATGY	1 cut(s)	112
XmnI	GAANNNNTTC	1 cut(s)	134
XspI	CTAG	2 cut(s)	11, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.