Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003688

Physical Location & Seq

Genomic Coordinates Forward (+)

15602511 .. 15605813

Gene Structure 3303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g12140.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGTCATTAACCAGATTGGGGTGGAGGCATCGACTAATCAGCTGGCTGATCAGCAGATGCCAGTGTATAATCTTGCATCGAAGATTCTTTGTCGGGTTATCAATGCTGAACCAGACACTGATGAAGTATTTTCACAAGTCACTTTACTTCCCGAATCAAATTTTTCAGAATGGTTATGTCACACCCTGCTATTCTTCCTGTCAAAATGGGGAAGGTTTGCATGGTTGTCACTCTTCGAACAGTTTTTATTTCCTCATGAATCTGATCTGCCTTTTTCAAAGATTTCTCTGGTTAGAACTTCAATCTACAAGCTTTGTGGCTGATCAGAAGCTACCGTATTTGGATTTTGCTGCTCAATGCAGGCATCTCAACTCAATTACTACAAACCCTATTCAAGGTGAAAGCTGTTGTACACTATGGAATTGCAGGAAATGCAGATCCCCAACTCCAAATTGGAGATGTCACCATCCCTCAATTTTGGCCTCATACAGGCCTTTGGAATTGGCAGTTTCAAAAAGGATTTTCATATTGTCCCCAGTCAACCCGAGGGTTCTATTTGATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

22.09

Weight (kDa)

9.4

Isoelectric Point (pI)

48.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24730 FvH4_2g24730 FvH4_2g24730 FvH4_5g06540
malus_domestica	MD00G1056300.v1.1 MD05G1338500.v1.1 MD11G1297900.v1.1
prunus_persica	Prupe.8G252300_v2.0.a1
pyrus_communis	pycom02g21520 pycom03g21940 pycom03g21950 pycom05g12140 pycom11g26170 pycom16g06400 pycom16g24090
rosa_chinensis	RchiOBHm_Chr6g0292551
rosa_laevigata	RLG00000012010
rosa_multiflora	Rmu_co8118566.1_g000001 Rmu_sc0000515.1_g000001 Rmu_sc0003486.1_g000005 Rmu_sc0004825.1_g000018
rosa_roxburghii	Rroxscaffold_4G00318020 Rroxscaffold_7G00174940
rosa_rugosa	Rorug06G0227900
rosa_samantha	Rh5AG357200 Rh5DG382900 Rh6AG341000 Rh6AG341100 Rh6BG089400 Rh6BG348500 Rh6CG355300 Rh6CG355400 Rh6DG341100 Rh6DG341200
rosa_wichuraiana	Rw6G029710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	432
AcsI	RAATTY	1 cut(s)	159
AfaI	GTAC	1 cut(s)	412
AfiI	CCNNNNNNNGG	3 cut(s)	18, 395, 489
AgsI	TTSAA	4 cut(s)	278, 302, 395, 513
AluBI	AGCT	4 cut(s)	42, 312, 331, 405
AluI	AGCT	4 cut(s)	42, 312, 331, 405
AlwI	GGATC	1 cut(s)	432
AlwNI	CAGNNNCTG	1 cut(s)	118
Ama87I	CYCGRG	1 cut(s)	544
AoxI	GGCC	2 cut(s)	480, 491
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	1 cut(s)	159
AsuHPI	GGTGA	2 cut(s)	410, 455
AsuII	TTCGAA	1 cut(s)	236
AvaI	CYCGRG	1 cut(s)	544
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	1 cut(s)	474
BclI	TGATCA	2 cut(s)	48, 322
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
BmeT110I	CYCGRG	1 cut(s)	544
BmrI	ACTGGG	1 cut(s)	530
BmsI	GCATC	4 cut(s)	37, 47, 85, 373
BmuI	ACTGGG	1 cut(s)	530
Bpu14I	TTCGAA	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	545
Bsc4I	CCNNNNNNNGG	3 cut(s)	18, 395, 489
Bse1I	ACTGG	2 cut(s)	61, 536
BseDI	CCNNGG	1 cut(s)	545
BseGI	GGATG	1 cut(s)	466
BseLI	CCNNNNNNNGG	3 cut(s)	18, 395, 489
BseNI	ACTGG	2 cut(s)	61, 536
BseXI	GCAGC	1 cut(s)	337
BshFI	GGCC	2 cut(s)	482, 493
BsiHKCI	CYCGRG	1 cut(s)	544
BslFI	GGGAC	1 cut(s)	517
BslI	CCNNNNNNNGG	3 cut(s)	18, 395, 489
BsmFI	GGGAC	1 cut(s)	517
BsnI	GGCC	2 cut(s)	482, 493
BsoBI	CYCGRG	1 cut(s)	544
Bsp119I	TTCGAA	1 cut(s)	236
Bsp1407I	TGTACA	1 cut(s)	410
Bsp143I	GATC	4 cut(s)	48, 264, 322, 437
BspANI	GGCC	2 cut(s)	482, 493
BspHI	TCATGA	1 cut(s)	255
BspPI	GGATC	1 cut(s)	432
BspT104I	TTCGAA	1 cut(s)	236
BsrGI	TGTACA	1 cut(s)	410
BsrI	ACTGG	2 cut(s)	61, 536
BssECI	CCNNGG	1 cut(s)	545
BssMI	GATC	4 cut(s)	48, 264, 322, 437
Bst4CI	ACNGT	2 cut(s)	242, 336
Bst6I	CTCTTC	1 cut(s)	238
BstAPI	GCANNNNNTGC	1 cut(s)	432
BstAUI	TGTACA	1 cut(s)	410
BstBI	TTCGAA	1 cut(s)	236
BstC8I	GCNNGC	2 cut(s)	44, 362
BstENI	CCTNNNNNAGG	2 cut(s)	393, 487
BstF5I	GGATG	1 cut(s)	466
BstKTI	GATC	4 cut(s)	51, 267, 325, 440
BstMBI	GATC	4 cut(s)	48, 264, 322, 437
BstMWI	GCNNNNNNNGC	1 cut(s)	432
BstV1I	GCAGC	1 cut(s)	337
BstX2I	RGATCY	1 cut(s)	437
BstYI	RGATCY	1 cut(s)	437
BsuRI	GGCC	2 cut(s)	482, 493
BtsCI	GGATG	1 cut(s)	466
BtsIMutI	CAGTG	2 cut(s)	68, 116
Cac8I	GCNNGC	2 cut(s)	44, 362
CaiI	CAGNNNCTG	1 cut(s)	118
CciI	TCATGA	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	411
CspCI	CAANNNNNGTGG	2 cut(s)	297, 332
CviAII	CATG	2 cut(s)	221, 256
CviJI	RGCY	8 cut(s)	42, 46, 312, 320, 331, 405, 482, 493
CviKI_1	RGCY	8 cut(s)	42, 46, 312, 320, 331, 405, 482, 493
CviQI	GTAC	1 cut(s)	411
DpnI	GATC	4 cut(s)	50, 266, 324, 439
DpnII	GATC	4 cut(s)	48, 264, 322, 437
Eam1104I	CTCTTC	1 cut(s)	238
EarI	CTCTTC	1 cut(s)	238
Eco147I	AGGCCT	1 cut(s)	493
Eco88I	CYCGRG	1 cut(s)	544
EcoNI	CCTNNNNNAGG	2 cut(s)	393, 487
FaeI	CATG	2 cut(s)	224, 259
FaiI	YATR	7 cut(s)	68, 177, 222, 257, 418, 487, 527
FaqI	GGGAC	1 cut(s)	517
FatI	CATG	2 cut(s)	220, 255
FbaI	TGATCA	2 cut(s)	48, 322
Fnu4HI	GCNGC	1 cut(s)	351
FokI	GGATG	1 cut(s)	453
Fsp4HI	GCNGC	1 cut(s)	351
GluI	GCNGC	1 cut(s)	351
HaeIII	GGCC	2 cut(s)	482, 493
Hin1II	CATG	2 cut(s)	224, 259
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HindIII	AAGCTT	1 cut(s)	310
HinfI	GANTC	3 cut(s)	84, 154, 259
HphI	GGTGA	2 cut(s)	410, 455
Hpy166II	GTNNAC	2 cut(s)	413, 541
Hpy188I	TCNGA	3 cut(s)	168, 264, 327
Hpy188III	TCNNGA	2 cut(s)	151, 256
Hpy8I	GTNNAC	2 cut(s)	413, 541
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	2 cut(s)	242, 336
HpyCH4V	TGCA	5 cut(s)	76, 220, 360, 426, 435
HpyF10VI	GCNNNNNNNGC	1 cut(s)	432
Hsp92II	CATG	2 cut(s)	224, 259
Ksp22I	TGATCA	2 cut(s)	48, 322
Kzo9I	GATC	4 cut(s)	48, 264, 322, 437
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	4 cut(s)	37, 47, 85, 373
MaeIII	GTNAC	4 cut(s)	138, 178, 227, 461
MalI	GATC	4 cut(s)	50, 266, 324, 439
MboI	GATC	4 cut(s)	48, 264, 322, 437
MboII	GAAGA	3 cut(s)	93, 186, 225
MflI	RGATCY	1 cut(s)	437
MluCI	AATT	6 cut(s)	159, 375, 421, 451, 474, 500
MnlI	CCTC	5 cut(s)	18, 263, 481, 493, 540
MseI	TTAA	1 cut(s)	8
MspA1I	CMGCKG	1 cut(s)	42
MwoI	GCNNNNNNNGC	1 cut(s)	432
NdeII	GATC	4 cut(s)	48, 264, 322, 437
NlaIII	CATG	2 cut(s)	224, 259
NmuCI	GTSAC	4 cut(s)	138, 178, 227, 461
NspV	TTCGAA	1 cut(s)	236
PagI	TCATGA	1 cut(s)	255
PceI	AGGCCT	1 cut(s)	493
PfeI	GAWTC	3 cut(s)	84, 154, 259
PkrI	GCNGC	1 cut(s)	352
PstNI	CAGNNNCTG	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	437
PvuII	CAGCTG	1 cut(s)	42
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	4 cut(s)	48, 264, 322, 437
SetI	ASST	6 cut(s)	44, 217, 314, 333, 400, 407
SfaNI	GCATC	4 cut(s)	37, 47, 85, 373
SfuI	TTCGAA	1 cut(s)	236
Sse9I	AATT	6 cut(s)	159, 375, 421, 451, 474, 500
SseBI	AGGCCT	1 cut(s)	493
StuI	AGGCCT	1 cut(s)	493
TaaI	ACNGT	2 cut(s)	242, 336
TaqI	TCGA	3 cut(s)	31, 79, 236
TasI	AATT	6 cut(s)	159, 375, 421, 451, 474, 500
TatI	WGTACW	1 cut(s)	410
TfiI	GAWTC	3 cut(s)	84, 154, 259
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TscAI	CASTG	2 cut(s)	68, 123
TseFI	GTSAC	4 cut(s)	138, 178, 227, 461
TseI	GCWGC	1 cut(s)	350
Tsp45I	GTSAC	4 cut(s)	138, 178, 227, 461
TspDTI	ATGAA	3 cut(s)	137, 272, 514
TspRI	CASTG	2 cut(s)	68, 123
XagI	CCTNNNNNAGG	2 cut(s)	393, 487
XapI	RAATTY	1 cut(s)	159
XcmI	CCANNNNNNNNNTGG	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.