Rmu_co8118566.1_g000001

Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8118566.1
OG0003688
Physical Location & Seq
Forward (+)
1 .. 523
523 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8118566.1_g000001.1.cds

Sequence Viewer

Length: 230 bp
atgctgaaactgcactctacacggagctgtggcacgcctgcgccgggccgctcgtgactgtgccgcgtgaaggggagcgtgtcttttatttccctcagggacacatcgagcaggtggaggcgtcgactaatcaggtggctgagcagcagatgccagtgtataatcttccaccgaagatactttgcaaggtgatcaatgttcagttgaaggtacggattgtccatttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0008285 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009838 GO:0009889 GO:0009890 GO:0009892 GO:0009900 GO:0009908 GO:0009909 GO:0009911 GO:0010033 GO:0010047 GO:0010150 GO:0010227 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010959 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0033993 GO:0034762 GO:0034764 GO:0034765 GO:0034767 GO:0035670 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043268 GO:0043269 GO:0043270 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048582 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051094 GO:0051171 GO:0051172 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090693 GO:0097159 GO:0097305 GO:0099402 GO:0140110 GO:1901363 GO:1901379 GO:1901381 GO:1901700 GO:1902679 GO:1903286 GO:1903288 GO:1903506 GO:1903507 GO:1904062 GO:1904064 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000243 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
AUX_IAA Auxin_resp B3

Protein Analysis

75

Amino Acids

8.55

Weight (kDa)

6.31

Isoelectric Point (pI)

54.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 102
Acc36I ACCTGC 1 cut(s) 102
AccBSI CCGCTC 1 cut(s) 51
AccI GTMKAC 1 cut(s) 124
AccII CGCG 1 cut(s) 66
AciI CCGC 2 cut(s) 49, 64
AcyI GRCGYC 1 cut(s) 121
AfaI GTAC 1 cut(s) 212
AfiI CCNNNNNNNGG 2 cut(s) 44, 70
AgsI TTSAA 1 cut(s) 207
AluBI AGCT 1 cut(s) 27
AluI AGCT 1 cut(s) 27
AoxI GGCC 1 cut(s) 46
ApeKI GCWGC 1 cut(s) 144
AspLEI GCGC 1 cut(s) 43
AspS9I GGNCC 1 cut(s) 46
AsuC2I CCSGG 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 201
AxyI CCTNAGG 1 cut(s) 95
BauI CACGAG 1 cut(s) 52
BbvI GCAGC 1 cut(s) 156
BclI TGATCA 1 cut(s) 191
BcnI CCSGG 1 cut(s) 45
BfuAI ACCTGC 1 cut(s) 102
BisI GCNGC 3 cut(s) 49, 64, 145
BlpI GCTNAGC 1 cut(s) 140
BlsI GCNGC 3 cut(s) 50, 65, 146
Bme1390I CCNGG 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 45
BmsI GCATC 1 cut(s) 140
Bpu1102I GCTNAGC 1 cut(s) 140
BpuMI CCSGG 1 cut(s) 45
BsaHI GRCGYC 1 cut(s) 121
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 70
Bse1I ACTGG 1 cut(s) 154
Bse21I CCTNAGG 1 cut(s) 95
BseLI CCNNNNNNNGG 2 cut(s) 44, 70
BseMII CTCAG 2 cut(s) 109, 131
BseNI ACTGG 1 cut(s) 154
BseXI GCAGC 1 cut(s) 156
Bsh1236I CGCG 1 cut(s) 66
BshFI GGCC 1 cut(s) 48
BsiSI CCGG 1 cut(s) 44
BslFI GGGAC 1 cut(s) 113
BslI CCNNNNNNNGG 2 cut(s) 44, 70
BsmFI GGGAC 1 cut(s) 113
BsnI GGCC 1 cut(s) 48
Bsp143I GATC 1 cut(s) 191
Bsp1720I GCTNAGC 1 cut(s) 140
BspACI CCGC 2 cut(s) 49, 64
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 2 cut(s) 108, 132
BspFNI CGCG 1 cut(s) 66
BspMI ACCTGC 1 cut(s) 102
BsrBI CCGCTC 1 cut(s) 51
BsrI ACTGG 1 cut(s) 154
BssMI GATC 1 cut(s) 191
BssNI GRCGYC 1 cut(s) 121
BssSI CACGAG 1 cut(s) 52
Bst2BI CACGAG 1 cut(s) 52
Bst4CI ACNGT 1 cut(s) 60
BstACI GRCGYC 1 cut(s) 121
BstAPI GCANNNNNTGC 1 cut(s) 150
BstC8I GCNNGC 2 cut(s) 35, 39
BstDEI CTNAG 2 cut(s) 95, 140
BstFNI CGCG 1 cut(s) 66
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 1 cut(s) 194
BstMBI GATC 1 cut(s) 191
BstMWI GCNNNNNNNGC 2 cut(s) 10, 150
BstSCI CCNGG 1 cut(s) 43
BstUI CGCG 1 cut(s) 66
BstV1I GCAGC 1 cut(s) 156
Bsu36I CCTNAGG 1 cut(s) 95
BsuRI GGCC 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 161
BveI ACCTGC 1 cut(s) 102
Cac8I GCNNGC 2 cut(s) 35, 39
CfoI GCGC 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 46
CseI GACGC 1 cut(s) 110
Csp6I GTAC 1 cut(s) 211
CviJI RGCY 3 cut(s) 27, 48, 139
CviKI_1 RGCY 3 cut(s) 27, 48, 139
CviQI GTAC 1 cut(s) 211
DdeI CTNAG 2 cut(s) 95, 140
DpnI GATC 1 cut(s) 193
DpnII GATC 1 cut(s) 191
Eco81I CCTNAGG 1 cut(s) 95
FaiI YATR 1 cut(s) 161
FaqI GGGAC 1 cut(s) 113
FbaI TGATCA 1 cut(s) 191
FblI GTMKAC 1 cut(s) 124
Fnu4HI GCNGC 3 cut(s) 49, 64, 145
Fsp4HI GCNGC 3 cut(s) 49, 64, 145
GlaI GCGC 1 cut(s) 42
GluI GCNGC 3 cut(s) 49, 64, 145
HaeIII GGCC 1 cut(s) 48
HapII CCGG 1 cut(s) 44
HgaI GACGC 1 cut(s) 110
HhaI GCGC 1 cut(s) 43
Hin1I GRCGYC 1 cut(s) 121
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HincII GTYRAC 1 cut(s) 125
HindII GTYRAC 1 cut(s) 125
HpaII CCGG 1 cut(s) 44
HphI GGTGA 1 cut(s) 201
Hpy166II GTNNAC 1 cut(s) 125
Hpy188III TCNNGA 1 cut(s) 54
Hpy8I GTNNAC 1 cut(s) 125
Hpy99I CGWCG 1 cut(s) 126
HpyAV CCTTC 2 cut(s) 64, 201
HpyCH4III ACNGT 1 cut(s) 60
HpyCH4V TGCA 2 cut(s) 13, 185
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 150
HpyF3I CTNAG 2 cut(s) 95, 140
Hsp92I GRCGYC 1 cut(s) 121
HspAI GCGC 1 cut(s) 41
Ksp22I TGATCA 1 cut(s) 191
Kzo9I GATC 1 cut(s) 191
LmnI GCTCC 2 cut(s) 24, 75
LpnPI CCDG 6 cut(s) 51, 57, 82, 97, 118, 167
Lsp1109I GCAGC 1 cut(s) 156
LweI GCATC 1 cut(s) 140
MaeIII GTNAC 1 cut(s) 54
MalI GATC 1 cut(s) 193
MbiI CCGCTC 1 cut(s) 51
MboI GATC 1 cut(s) 191
MboII GAAGA 2 cut(s) 157, 186
MnlI CCTC 2 cut(s) 104, 111
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 1 cut(s) 45
MvnI CGCG 1 cut(s) 66
MwoI GCNNNNNNNGC 2 cut(s) 10, 150
NciI CCSGG 1 cut(s) 45
NdeII GATC 1 cut(s) 191
NmuCI GTSAC 1 cut(s) 54
PaqCI CACCTGC 1 cut(s) 102
PkrI GCNGC 3 cut(s) 50, 65, 146
PspPI GGNCC 1 cut(s) 46
RsaI GTAC 1 cut(s) 212
RsaNI GTAC 1 cut(s) 211
SalI GTCGAC 1 cut(s) 123
SatI GCNGC 3 cut(s) 49, 64, 145
Sau3AI GATC 1 cut(s) 191
Sau96I GGNCC 1 cut(s) 46
ScrFI CCNGG 1 cut(s) 45
SetI ASST 5 cut(s) 29, 116, 137, 191, 212
SfaNI GCATC 1 cut(s) 140
SsiI CCGC 2 cut(s) 49, 64
StyD4I CCNGG 1 cut(s) 43
TaaI ACNGT 1 cut(s) 60
TaqI TCGA 2 cut(s) 107, 124
TauI GCSGC 2 cut(s) 51, 66
TscAI CASTG 1 cut(s) 161
TseFI GTSAC 1 cut(s) 54
TseI GCWGC 1 cut(s) 144
Tsp45I GTSAC 1 cut(s) 54
TspGWI ACGGA 2 cut(s) 37, 228
TspRI CASTG 1 cut(s) 161
XmiI GTMKAC 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.