Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003688

Physical Location & Seq

Genomic Coordinates Reverse (-)

54412130 .. 54413364

Gene Structure 1235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG341200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCTGGTTCAGTCAGTGGGGAGCAACAGAGCGCCTACCCTGTTAACAACCGCCAAGGTGATAGAGATGATTTGTACACCCAACTATGGCATACATGTGCCGGGTCTAATATCTATGTCCCACGCCCTGGAGACAAAGTTTTCTACTTCGCTCAAGGCCACATTGAACAGGTTGAGGCATATGCAGACCCAGACAGTAATGCGGCCATGCCAAAATACAATTTGCCTCCCAAGATTCTCTGCCATGTTGTTAATGTGCAGCTAAAGGCCGAAGTTCACACAGATGAAGTCTTTGCTCAGATAACCTTGCTTCCTGTGACTGAGGTAGTTTTCTTGCGCCTTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

115

Amino Acids

12.86

Weight (kDa)

5.15

Isoelectric Point (pI)

57.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24730 FvH4_2g24730 FvH4_2g24730 FvH4_5g06540
malus_domestica	MD00G1056300.v1.1 MD05G1338500.v1.1 MD11G1297900.v1.1
prunus_persica	Prupe.8G252300_v2.0.a1
pyrus_communis	pycom02g21520 pycom03g21940 pycom03g21950 pycom05g12140 pycom11g26170 pycom16g06400 pycom16g24090
rosa_chinensis	RchiOBHm_Chr6g0292551
rosa_laevigata	RLG00000012010
rosa_multiflora	Rmu_co8118566.1_g000001 Rmu_sc0000515.1_g000001 Rmu_sc0003486.1_g000005 Rmu_sc0004825.1_g000018
rosa_roxburghii	Rroxscaffold_4G00318020 Rroxscaffold_7G00174940
rosa_rugosa	Rorug06G0227900
rosa_samantha	Rh5AG357200 Rh5DG382900 Rh6AG341000 Rh6AG341100 Rh6BG089400 Rh6BG348500 Rh6CG355300 Rh6CG355400 Rh6DG341100 Rh6DG341200
rosa_wichuraiana	Rw6G029710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	128
AciI	CCGC	2 cut(s)	52, 203
AcoI	YGGCCR	1 cut(s)	204
AfaI	GTAC	1 cut(s)	77
AfiI	CCNNNNNNNGG	2 cut(s)	87, 128
AflIII	ACRYGT	1 cut(s)	95
AgsI	TTSAA	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	127
AluBI	AGCT	1 cut(s)	262
AluI	AGCT	1 cut(s)	262
Alw26I	GTCTC	1 cut(s)	126
AoxI	GGCC	3 cut(s)	157, 204, 267
ApeKI	GCWGC	1 cut(s)	259
AspLEI	GCGC	2 cut(s)	35, 339
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	271
BciT130I	CCWGG	1 cut(s)	129
BcnI	CCSGG	1 cut(s)	103
BcoDI	GTCTC	1 cut(s)	126
BfoI	RGCGCY	1 cut(s)	36
BisI	GCNGC	2 cut(s)	204, 260
BlsI	GCNGC	2 cut(s)	205, 261
Bme1390I	CCNGG	2 cut(s)	103, 129
BmrFI	CCNGG	2 cut(s)	103, 129
BpmI	CTGGAG	1 cut(s)	150
BpuEI	CTTGAG	1 cut(s)	138
BpuMI	CCSGG	1 cut(s)	103
BsaJI	CCNNGG	2 cut(s)	55, 127
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 128
BseBI	CCWGG	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	55, 127
BseLI	CCNNNNNNNGG	2 cut(s)	87, 128
BseMII	CTCAG	2 cut(s)	311, 312
BseXI	GCAGC	1 cut(s)	271
BsgI	GTGCAG	1 cut(s)	278
BshFI	GGCC	3 cut(s)	159, 206, 269
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	2 cut(s)	87, 128
BsmAI	GTCTC	1 cut(s)	126
BsmFI	GGGAC	1 cut(s)	104
BsnI	GGCC	3 cut(s)	159, 206, 269
Bsp1407I	TGTACA	1 cut(s)	75
BspACI	CCGC	2 cut(s)	52, 203
BspANI	GGCC	3 cut(s)	159, 206, 269
BspCNI	CTCAG	2 cut(s)	310, 313
BsrGI	TGTACA	1 cut(s)	75
BssECI	CCNNGG	2 cut(s)	55, 127
BssT1I	CCWWGG	1 cut(s)	55
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	197
BstAUI	TGTACA	1 cut(s)	75
BstDEI	CTNAG	2 cut(s)	297, 321
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	2 cut(s)	35, 339
BstMAI	GTCTC	1 cut(s)	126
BstNI	CCWGG	1 cut(s)	129
BstNSI	RCATGY	1 cut(s)	99
BstSCI	CCNGG	2 cut(s)	101, 127
BstV1I	GCAGC	1 cut(s)	271
BsuRI	GGCC	3 cut(s)	159, 206, 269
BtsIMutI	CAGTG	1 cut(s)	22
CfoI	GCGC	2 cut(s)	35, 339
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	3 cut(s)	96, 208, 245
CviJI	RGCY	5 cut(s)	5, 159, 206, 262, 269
CviKI_1	RGCY	5 cut(s)	5, 159, 206, 262, 269
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	2 cut(s)	297, 321
EaeI	YGGCCR	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	127
EcoT14I	CCWWGG	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	55
FaeI	CATG	3 cut(s)	99, 211, 248
FaiI	YATR	8 cut(s)	88, 93, 97, 117, 181, 183, 209, 246
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	3 cut(s)	95, 207, 244
FauNDI	CATATG	1 cut(s)	181
Fnu4HI	GCNGC	2 cut(s)	204, 260
Fsp4HI	GCNGC	2 cut(s)	204, 260
GlaI	GCGC	2 cut(s)	34, 338
GluI	GCNGC	2 cut(s)	204, 260
GsuI	CTGGAG	1 cut(s)	150
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	3 cut(s)	159, 206, 269
HapII	CCGG	1 cut(s)	102
HhaI	GCGC	2 cut(s)	35, 339
Hin1II	CATG	3 cut(s)	99, 211, 248
Hin6I	GCGC	2 cut(s)	33, 337
HinP1I	GCGC	2 cut(s)	33, 337
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HinfI	GANTC	1 cut(s)	235
HpaI	GTTAAC	1 cut(s)	46
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	3 cut(s)	46, 78, 277
Hpy188I	TCNGA	1 cut(s)	300
Hpy8I	GTNNAC	3 cut(s)	46, 78, 277
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4V	TGCA	2 cut(s)	185, 259
HpyF3I	CTNAG	2 cut(s)	297, 321
Hsp92II	CATG	3 cut(s)	99, 211, 248
HspAI	GCGC	2 cut(s)	33, 337
KspAI	GTTAAC	1 cut(s)	46
LmnI	GCTCC	1 cut(s)	22
LpnPI	CCDG	7 cut(s)	54, 114, 115, 141, 155, 204, 327
Lsp1109I	GCAGC	1 cut(s)	271
MaeIII	GTNAC	1 cut(s)	316
MluCI	AATT	1 cut(s)	220
MnlI	CCTC	3 cut(s)	169, 237, 316
MseI	TTAA	2 cut(s)	45, 252
MslI	CAYNNNNRTG	2 cut(s)	96, 282
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	2 cut(s)	103, 129
MvaI	CCWGG	1 cut(s)	129
NciI	CCSGG	1 cut(s)	103
NdeI	CATATG	1 cut(s)	181
NlaIII	CATG	3 cut(s)	99, 211, 248
NmuCI	GTSAC	1 cut(s)	316
NspI	RCATGY	1 cut(s)	99
PciI	ACATGT	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	235
PflMI	CCANNNNNTGG	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	205, 261
PscI	ACATGT	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	2 cut(s)	96, 282
SaqAI	TTAA	2 cut(s)	45, 252
SatI	GCNGC	2 cut(s)	204, 260
ScrFI	CCNGG	2 cut(s)	103, 129
SetI	ASST	5 cut(s)	61, 174, 264, 308, 327
SmiMI	CAYNNNNRTG	2 cut(s)	96, 282
SmlI	CTYRAG	1 cut(s)	153
SmoI	CTYRAG	1 cut(s)	153
Sse9I	AATT	1 cut(s)	220
SsiI	CCGC	2 cut(s)	52, 203
StyD4I	CCNGG	2 cut(s)	101, 127
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	1 cut(s)	197
TasI	AATT	1 cut(s)	220
TatI	WGTACW	1 cut(s)	75
TauI	GCSGC	1 cut(s)	206
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	2 cut(s)	45, 252
Tru9I	TTAA	2 cut(s)	45, 252
TscAI	CASTG	1 cut(s)	22
TseFI	GTSAC	1 cut(s)	316
TseI	GCWGC	1 cut(s)	259
Tsp45I	GTSAC	1 cut(s)	316
TspDTI	ATGAA	1 cut(s)	300
TspRI	CASTG	1 cut(s)	22
Van91I	CCANNNNNTGG	1 cut(s)	128
XceI	RCATGY	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.