Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003688

Physical Location & Seq

Genomic Coordinates Reverse (-)

41496240 .. 41500671

Gene Structure 4432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1297900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1935 bp

ATGTTAGGTGAGAAAGATGATTTGTACACACACCTCTGGTATGCGTGCGCCGGGGCAAATGTTTACGTTCCCCGCCCCGGCGAGAAGGTTTTCTACTTTCTTCAAGGTCATATGGAACAGGTTGAGGCATATGCAAACCAAGACGGTAAAATGGAAATGCCAAGATACAATTTGCCTCCCAAGATCCTCTGCAATGTTGCTGAAGTTCACACAGACGAAGTGTATGCTCAAATCACCTTACTTCCTGTGACCGAGCAAGACCAGCTAAGTGTAGAGGAAGAAAATACTCCACCCTTGCCTTGGCGAACCAGTACACTATCCTTTAGCAAGACACTTACCCCGTCAGACACAAGCTCCCACGGTGGATTCTCTGTTCCGAAGCGACAAGCTGAAGAATGCCTTCCAGCTCTGGACATGTCTCAGCAGCCACCAGTACAAGATTTGGTAGCAAAGGACTTGCAGGGAAATGAATGGAGCTTTCGCCATATATTTCGAGGTCAGCCAAGGAGGCACTTGCTTACTAGTGGTTGGACTACGTTTGTGACTGCAAAAAGACTTGTTTCTGGGGATGCATGTATCTTTGCCAGAGGAGAAAATGGAGAACTGCGTGTTGGCATATGCCGTGCGACCAAAACACAAGATACTGCATCGGCTTCTCTCATTTCTGGCCACAGCATGCAACATGGCATACTCGCCAGCGCTTTCCATGCCATTTCTACTGGTACCATATTTACTGTTTACTACCGTCCATGGACAAGTCCTGCTGCATTCATAATTCCTTATGATCGATACATGAAATCAGCCGAAATTGACTATTCCATTGGAATGAGATTCAGAATGTATTCCGAAGGTGAAGAATGTGCAGATCAGAAGAAGAGGTTGGAAGGAACTATTATAGATATCGAGGACAACGATTATTTGAGGTGGCCCGATTCAGAATGGAGGTGTCTGAAGATGCGATTGGATACCGCATCAGATACCTGCTTCCATTCTGAAAGGCTCTCTCCTTGGAATATCGTACCTCTCAAACCTAACAAGAGGGCACGTTTACCTGATTTGCCATCACCCGGGATTTCTAGCTTGGCCAGGAACGGCTCGTTGCTGATTTCAGTTGAGTCCACACGTCCAAGAAAAAAAAAGGTCTTTCAAGGTCAAGAAACTAGTGATCCACCTGCTCATGAACCGGGTACACCAAAACAGCTATTACAGTTCATTCCACCCCCAAATCCTGACTGGGACTACACACGGTTGGGATTGGAAAACAATCTCAACGTTCCAATGAACGACTCATTTTATCAATGTCCTGGCAGTCCAAAAGCTCCAAGCCTTACTAACCAATGGCCACCAATGTTTGGTTTCGGAGTCTTTGACAGTGGCGCGTGTAAAAGAAGCATGTCAGTTCCAAATATTTGGTCCTCGAGGTCCCAGAAATTGAGAACCTTCGAACTGATGAGTGAGACTCAATCGCCACTTGTCCAGCCCAAGACCACAATGCTTTTTGGAGTCAAGATAGTTACTAGTTACCCGGAGCTTCCTTCACCCCAAGTTGCCAATTCTATTGAACTTTATAGTCCTTGTTCTACTCCTCCAATATATCATTCAAGTGTTTCTGAAACAATCCAGCTGTCAGAGACATCGAAGAGTGTCTCTGGTGTTCGTTCAGAGAAACAATGCAGGAAATGTTGCTCTGTCAGTAACAGGAGTCGCATAAAGGTGCTCAAACATGGAGCTCCTGTTGGAAGATCGATTGATCTCACGCGCTTTGATGGTTACAATGAACTCATTCGTGAGCTTGACCAGATGTTCGATTTCAAAGGAAGCCTGATCGGTGGAAGCAGTGGATGGCAGGTAACCTACATGGATGACGTCGGAGACAGGATGCTGGTAGGAGATTACCCGTGGCAGTTAAGAACTAGAACTTATGCTGTGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

645

Amino Acids

72.51

Weight (kDa)

6.89

Isoelectric Point (pI)

57.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	108 - 209	2.5e-24	B3 DNA binding domain
ARF_AD	PF06507	257 - 342	5.1e-24	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24730 FvH4_2g24730 FvH4_2g24730 FvH4_5g06540
malus_domestica	MD00G1056300.v1.1 MD05G1338500.v1.1 MD11G1297900.v1.1
prunus_persica	Prupe.8G252300_v2.0.a1
pyrus_communis	pycom02g21520 pycom03g21940 pycom03g21950 pycom05g12140 pycom11g26170 pycom16g06400 pycom16g24090
rosa_chinensis	RchiOBHm_Chr6g0292551
rosa_laevigata	RLG00000012010
rosa_multiflora	Rmu_co8118566.1_g000001 Rmu_sc0000515.1_g000001 Rmu_sc0003486.1_g000005 Rmu_sc0004825.1_g000018
rosa_roxburghii	Rroxscaffold_4G00318020 Rroxscaffold_7G00174940
rosa_rugosa	Rorug06G0227900
rosa_samantha	Rh5AG357200 Rh5DG382900 Rh6AG341000 Rh6AG341100 Rh6BG089400 Rh6BG348500 Rh6CG355300 Rh6CG355400 Rh6DG341100 Rh6DG341200
rosa_wichuraiana	Rw6G029710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1180
AatII	GACGTC	1 cut(s)	1869
AbsI	CCTCGAGG	1 cut(s)	1417
Acc36I	ACCTGC	3 cut(s)	989, 1180, 1837
Acc65I	GGTACC	1 cut(s)	722
AccB1I	GGYRCC	1 cut(s)	722
AccB7I	CCANNNNNTGG	1 cut(s)	1352
AccII	CGCG	2 cut(s)	1379, 1759
AciI	CCGC	2 cut(s)	73, 969
AclI	AACGTT	1 cut(s)	1272
AclWI	GGATC	2 cut(s)	178, 1160
AcoI	YGGCCR	3 cut(s)	667, 1083, 1340
AcuI	CTGAAG	3 cut(s)	222, 411, 971
AcyI	GRCGYC	1 cut(s)	1866
AfaI	GTAC	6 cut(s)	26, 313, 435, 724, 1020, 1189
AfeI	AGCGCT	1 cut(s)	700
AfiI	CCNNNNNNNGG	4 cut(s)	77, 300, 1067, 1352
AflIII	ACRYGT	2 cut(s)	414, 1121
AgsI	TTSAA	5 cut(s)	104, 1148, 1562, 1602, 1813
AhlI	ACTAGT	3 cut(s)	521, 1160, 1517
AjiI	CACGTC	1 cut(s)	1124
AjnI	CCWGG	2 cut(s)	1085, 1303
AjuI	GAANNNNNNNTTGG	8 cut(s)	594, 626, 863, 895, 944, 976, 1582, 1614
AloI	GAACNNNNNNTCC	2 cut(s)	357, 389
Alw21I	GWGCWC	2 cut(s)	1719, 1732
Alw26I	GTCTC	5 cut(s)	423, 1451, 1625, 1651, 1866
AlwI	GGATC	2 cut(s)	178, 1160
Ama87I	CYCGRG	2 cut(s)	1067, 1417
Aor51HI	AGCGCT	1 cut(s)	700
AoxI	GGCC	4 cut(s)	667, 926, 1083, 1340
ApeKI	GCWGC	2 cut(s)	424, 764
ArsI	GACNNNNNNTTYG	4 cut(s)	1397, 1429, 1787, 1819
Asp700I	GAANNNNTTC	4 cut(s)	89, 399, 841, 1782
Asp718I	GGTACC	1 cut(s)	722
AspLEI	GCGC	4 cut(s)	50, 701, 1379, 1761
AspS9I	GGNCC	3 cut(s)	927, 1413, 1422
AsuC2I	CCSGG	6 cut(s)	52, 78, 1068, 1069, 1185, 1526
AsuHPI	GGTGA	5 cut(s)	20, 226, 863, 1056, 1530
AsuII	TTCGAA	1 cut(s)	1443
AvaI	CYCGRG	2 cut(s)	1067, 1417
AvaII	GGWCC	2 cut(s)	1413, 1422
BaeGI	GKGCMC	1 cut(s)	1045
BalI	TGGCCA	3 cut(s)	669, 1085, 1342
BanI	GGYRCC	1 cut(s)	722
BanII	GRGCYC	1 cut(s)	1732
BarI	GAAGNNNNNNTAC	2 cut(s)	77, 109
Bbv12I	GWGCWC	2 cut(s)	1719, 1732
BbvI	GCAGC	2 cut(s)	436, 751
BccI	CCATC	3 cut(s)	1069, 1760, 1836
BceAI	ACGGC	2 cut(s)	606, 1108
BcgI	CGANNNNNNTGC	2 cut(s)	206, 240
BciT130I	CCWGG	2 cut(s)	1087, 1305
BciVI	GTATCC	1 cut(s)	958
BcnI	CCSGG	6 cut(s)	52, 78, 1068, 1069, 1185, 1526
BcoDI	GTCTC	5 cut(s)	423, 1451, 1625, 1651, 1866
BcuI	ACTAGT	3 cut(s)	521, 1160, 1517
BfaI	CTAG	5 cut(s)	522, 1077, 1161, 1518, 1914
BfoI	RGCGCY	1 cut(s)	702
BfuAI	ACCTGC	3 cut(s)	989, 1180, 1837
BfuI	GTATCC	1 cut(s)	958
BglI	GCCNNNNNGGC	1 cut(s)	508
BisI	GCNGC	2 cut(s)	425, 765
BlsI	GCNGC	2 cut(s)	426, 766
Bme1390I	CCNGG	8 cut(s)	52, 78, 1068, 1069, 1087, 1185, 1305, 1526
Bme18I	GGWCC	2 cut(s)	1413, 1422
BmeT110I	CYCGRG	2 cut(s)	1067, 1417
BmgBI	CACGTC	1 cut(s)	1124
BmgT120I	GGNCC	3 cut(s)	927, 1413, 1422
BmiI	GGNNCC	2 cut(s)	724, 1424
BmrFI	CCNGG	8 cut(s)	52, 78, 1068, 1069, 1087, 1185, 1305, 1526
BmrI	ACTGGG	1 cut(s)	1243
BmsI	GCATC	5 cut(s)	559, 656, 945, 980, 1869
BmuI	ACTGGG	1 cut(s)	1243
BplI	GAGNNNNNCTC	2 cut(s)	1444, 1476
Bpu14I	TTCGAA	1 cut(s)	1443
BpuMI	CCSGG	6 cut(s)	52, 78, 1068, 1069, 1185, 1526
Bsa29I	ATCGAT	2 cut(s)	787, 1745
BsaHI	GRCGYC	1 cut(s)	1866
BsaJI	CCNNGG	9 cut(s)	51, 76, 299, 358, 503, 749, 1007, 1067, 1898
BsaXI	ACNNNNNCTCC	4 cut(s)	338, 368, 1719, 1749
Bsc4I	CCNNNNNNNGG	4 cut(s)	77, 300, 1067, 1352
Bse1I	ACTGG	4 cut(s)	309, 431, 724, 1238
Bse3DI	GCAATG	1 cut(s)	199
BseBI	CCWGG	2 cut(s)	1087, 1305
BseCI	ATCGAT	2 cut(s)	787, 1745
BseDI	CCNNGG	9 cut(s)	51, 76, 299, 358, 503, 749, 1007, 1067, 1898
BseGI	GGATG	4 cut(s)	574, 1847, 1867, 1884
BseLI	CCNNNNNNNGG	4 cut(s)	77, 300, 1067, 1352
BseMI	GCAATG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	434
BseNI	ACTGG	4 cut(s)	309, 431, 724, 1238
BseRI	GAGGAG	2 cut(s)	603, 1575
BseSI	GKGCMC	1 cut(s)	1045
BseXI	GCAGC	2 cut(s)	436, 751
BsgI	GTGCAG	1 cut(s)	882
Bsh1236I	CGCG	2 cut(s)	1379, 1759
BshFI	GGCC	4 cut(s)	669, 928, 1085, 1342
BshNI	GGYRCC	1 cut(s)	722
BshVI	ATCGAT	2 cut(s)	787, 1745
BsiHKAI	GWGCWC	2 cut(s)	1719, 1732
BsiHKCI	CYCGRG	2 cut(s)	1067, 1417
BsiSI	CCGG	5 cut(s)	51, 78, 1068, 1184, 1526
BslFI	GGGAC	2 cut(s)	1250, 1408
BslI	CCNNNNNNNGG	4 cut(s)	77, 300, 1067, 1352
BsmAI	GTCTC	5 cut(s)	423, 1451, 1625, 1651, 1866
BsmFI	GGGAC	2 cut(s)	1250, 1408
BsmI	GAATGC	2 cut(s)	401, 767
BsnI	GGCC	4 cut(s)	669, 928, 1085, 1342
BsoBI	CYCGRG	2 cut(s)	1067, 1417
Bsp119I	TTCGAA	1 cut(s)	1443
Bsp1286I	GDGCHC	3 cut(s)	1045, 1719, 1732
Bsp1407I	TGTACA	1 cut(s)	24
Bsp143I	GATC	7 cut(s)	183, 784, 865, 1165, 1742, 1750, 1824
Bsp19I	CCATGG	1 cut(s)	749
BspACI	CCGC	2 cut(s)	73, 969
BspANI	GGCC	4 cut(s)	669, 928, 1085, 1342
BspCNI	CTCAG	1 cut(s)	433
BspDI	ATCGAT	2 cut(s)	787, 1745
BspFNI	CGCG	2 cut(s)	1379, 1759
BspHI	TCATGA	1 cut(s)	1177
BspLI	GGNNCC	2 cut(s)	724, 1424
BspMI	ACCTGC	3 cut(s)	989, 1180, 1837
BspPI	GGATC	2 cut(s)	178, 1160
BspT104I	TTCGAA	1 cut(s)	1443
BspT107I	GGYRCC	1 cut(s)	722
BsrDI	GCAATG	1 cut(s)	199
BsrGI	TGTACA	1 cut(s)	24
BsrI	ACTGG	4 cut(s)	309, 431, 724, 1238
BssECI	CCNNGG	9 cut(s)	51, 76, 299, 358, 503, 749, 1007, 1067, 1898
BssMI	GATC	7 cut(s)	183, 784, 865, 1165, 1742, 1750, 1824
BssNI	GRCGYC	1 cut(s)	1866
BssT1I	CCWWGG	4 cut(s)	299, 503, 749, 1007
Bst2UI	CCWGG	2 cut(s)	1087, 1305
Bst4CI	ACNGT	7 cut(s)	146, 362, 736, 746, 1209, 1248, 1373
Bst6I	CTCTTC	2 cut(s)	869, 1634
BstACI	GRCGYC	1 cut(s)	1866
BstAUI	TGTACA	1 cut(s)	24
BstBI	TTCGAA	1 cut(s)	1443
BstC8I	GCNNGC	3 cut(s)	46, 677, 697
BstDEI	CTNAG	2 cut(s)	266, 420
BstDSI	CCRYGG	3 cut(s)	358, 749, 1898
BstEII	GGTNACC	1 cut(s)	1849
BstF5I	GGATG	4 cut(s)	574, 1847, 1867, 1884
BstFNI	CGCG	2 cut(s)	1379, 1759
BstH2I	RGCGCY	1 cut(s)	702
BstHHI	GCGC	4 cut(s)	50, 701, 1379, 1761
BstKTI	GATC	7 cut(s)	186, 787, 868, 1168, 1745, 1753, 1827
BstMAI	GTCTC	5 cut(s)	423, 1451, 1625, 1651, 1866
BstMBI	GATC	7 cut(s)	183, 784, 865, 1165, 1742, 1750, 1824
BstMWI	GCNNNNNNNGC	3 cut(s)	262, 508, 707
BstNI	CCWGG	2 cut(s)	1087, 1305
BstNSI	RCATGY	4 cut(s)	418, 576, 679, 1396
BstPI	GGTNACC	1 cut(s)	1849
BstSCI	CCNGG	8 cut(s)	50, 76, 1066, 1067, 1085, 1183, 1303, 1524
BstSLI	GKGCMC	1 cut(s)	1045
BstUI	CGCG	2 cut(s)	1379, 1759
BstV1I	GCAGC	2 cut(s)	436, 751
BstX2I	RGATCY	1 cut(s)	183
BstXI	CCANNNNNNTGG	1 cut(s)	1410
BstYI	RGATCY	1 cut(s)	183
Bsu15I	ATCGAT	2 cut(s)	787, 1745
BsuI	GTATCC	1 cut(s)	958
BsuRI	GGCC	4 cut(s)	669, 928, 1085, 1342
BsuTUI	ATCGAT	2 cut(s)	787, 1745
BtgI	CCRYGG	3 cut(s)	358, 749, 1898
BtrI	CACGTC	1 cut(s)	1124
BtsCI	GGATG	4 cut(s)	574, 1847, 1867, 1884
BtsI	GCAGTG	1 cut(s)	1843
BtsIMutI	CAGTG	2 cut(s)	1378, 1843
BveI	ACCTGC	3 cut(s)	989, 1180, 1837
Cac8I	GCNNGC	3 cut(s)	46, 677, 697
CciI	TCATGA	1 cut(s)	1177
CfoI	GCGC	4 cut(s)	50, 701, 1379, 1761
Cfr13I	GGNCC	3 cut(s)	927, 1413, 1422
Cfr9I	CCCGGG	1 cut(s)	1067
ClaI	ATCGAT	2 cut(s)	787, 1745
Csp6I	GTAC	6 cut(s)	25, 312, 434, 723, 1019, 1188
CviQI	GTAC	6 cut(s)	25, 312, 434, 723, 1019, 1188
DdeI	CTNAG	2 cut(s)	266, 420
DpnI	GATC	7 cut(s)	185, 786, 867, 1167, 1744, 1752, 1826
DpnII	GATC	7 cut(s)	183, 784, 865, 1165, 1742, 1750, 1824
EaeI	YGGCCR	3 cut(s)	667, 1083, 1340
Eam1104I	CTCTTC	2 cut(s)	869, 1634
EarI	CTCTTC	2 cut(s)	869, 1634
Ecl136II	GAGCTC	1 cut(s)	1730
Eco130I	CCWWGG	4 cut(s)	299, 503, 749, 1007
Eco24I	GRGCYC	1 cut(s)	1732
Eco32I	GATATC	1 cut(s)	901
Eco47I	GGWCC	2 cut(s)	1413, 1422
Eco47III	AGCGCT	1 cut(s)	700
Eco53kI	GAGCTC	1 cut(s)	1730
Eco57I	CTGAAG	3 cut(s)	222, 411, 971
Eco88I	CYCGRG	2 cut(s)	1067, 1417
Eco91I	GGTNACC	1 cut(s)	1849
EcoICRI	GAGCTC	1 cut(s)	1730
EcoO109I	RGGNCCY	1 cut(s)	1422
EcoO65I	GGTNACC	1 cut(s)	1849
EcoRII	CCWGG	2 cut(s)	1085, 1303
EcoRV	GATATC	1 cut(s)	901
EcoT14I	CCWWGG	4 cut(s)	299, 503, 749, 1007
EcoT22I	ATGCAT	1 cut(s)	574
EcoT38I	GRGCYC	1 cut(s)	1732
ErhI	CCWWGG	4 cut(s)	299, 503, 749, 1007
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FaqI	GGGAC	2 cut(s)	1250, 1408
FauI	CCCGC	1 cut(s)	80
FauNDI	CATATG	3 cut(s)	111, 130, 617
Fnu4HI	GCNGC	2 cut(s)	425, 765
FokI	GGATG	4 cut(s)	581, 1854, 1874, 1891
FriOI	GRGCYC	1 cut(s)	1732
Fsp4HI	GCNGC	2 cut(s)	425, 765
FspBI	CTAG	5 cut(s)	522, 1077, 1161, 1518, 1914
GlaI	GCGC	4 cut(s)	49, 700, 1378, 1760
GluI	GCNGC	2 cut(s)	425, 765
HaeII	RGCGCY	1 cut(s)	702
HaeIII	GGCC	4 cut(s)	669, 928, 1085, 1342
HapII	CCGG	5 cut(s)	51, 78, 1068, 1184, 1526
HhaI	GCGC	4 cut(s)	50, 701, 1379, 1761
Hin1I	GRCGYC	1 cut(s)	1866
Hin6I	GCGC	4 cut(s)	48, 699, 1377, 1759
HinP1I	GCGC	4 cut(s)	48, 699, 1377, 1759
HinfI	GANTC	9 cut(s)	366, 831, 932, 1115, 1286, 1362, 1459, 1503, 1702
HpaII	CCGG	5 cut(s)	51, 78, 1068, 1184, 1526
HphI	GGTGA	5 cut(s)	20, 226, 863, 1056, 1530
Hpy166II	GTNNAC	8 cut(s)	27, 64, 208, 314, 739, 1049, 1119, 1190
Hpy188III	TCNNGA	6 cut(s)	410, 1154, 1178, 1229, 1507, 1787
Hpy8I	GTNNAC	8 cut(s)	27, 64, 208, 314, 739, 1049, 1119, 1190
Hpy99I	CGWCG	1 cut(s)	1871
HpyAV	CCTTC	6 cut(s)	79, 410, 842, 878, 1450, 1545
HpyCH4III	ACNGT	7 cut(s)	146, 362, 736, 746, 1209, 1248, 1373
HpyCH4IV	ACGT	6 cut(s)	66, 536, 1045, 1123, 1272, 1866
HpyF10VI	GCNNNNNNNGC	3 cut(s)	262, 508, 707
HpyF3I	CTNAG	2 cut(s)	266, 420
HpySE526I	ACGT	6 cut(s)	66, 536, 1045, 1123, 1272, 1866
Hsp92I	GRCGYC	1 cut(s)	1866
HspAI	GCGC	4 cut(s)	48, 699, 1377, 1759
KpnI	GGTACC	1 cut(s)	726
Kzo9I	GATC	7 cut(s)	183, 784, 865, 1165, 1742, 1750, 1824
LmnI	GCTCC	6 cut(s)	359, 474, 1324, 1528, 1727, 1735
Lsp1109I	GCAGC	2 cut(s)	436, 751
LweI	GCATC	5 cut(s)	559, 656, 945, 980, 1869
MaeI	CTAG	5 cut(s)	522, 1077, 1161, 1518, 1914
MaeII	ACGT	6 cut(s)	66, 536, 1045, 1123, 1272, 1866
MaeIII	GTNAC	8 cut(s)	247, 541, 1513, 1520, 1694, 1769, 1849, 1927
MalI	GATC	7 cut(s)	185, 786, 867, 1167, 1744, 1752, 1826
MboI	GATC	7 cut(s)	183, 784, 865, 1165, 1742, 1750, 1824
MboII	GAAGA	9 cut(s)	92, 290, 404, 866, 883, 886, 964, 1651, 1752
MflI	RGATCY	1 cut(s)	183
MhlI	GDGCHC	3 cut(s)	1045, 1719, 1732
MlsI	TGGCCA	3 cut(s)	669, 1085, 1342
MluCI	AATT	5 cut(s)	169, 774, 807, 1430, 1552
MluNI	TGGCCA	3 cut(s)	669, 1085, 1342
MlyI	GAGTC	6 cut(s)	1124, 1280, 1371, 1453, 1512, 1711
MmeI	TCCRAC	4 cut(s)	509, 861, 1717, 1849
Mox20I	TGGCCA	3 cut(s)	669, 1085, 1342
Mph1103I	ATGCAT	1 cut(s)	574
MroXI	GAANNNNTTC	4 cut(s)	89, 399, 841, 1782
MscI	TGGCCA	3 cut(s)	669, 1085, 1342
MseI	TTAA	2 cut(s)	1907, 1933
MslI	CAYNNNNRTG	3 cut(s)	824, 1602, 1712
Msp20I	TGGCCA	3 cut(s)	669, 1085, 1342
MspA1I	CMGCKG	1 cut(s)	1624
MspI	CCGG	5 cut(s)	51, 78, 1068, 1184, 1526
MspR9I	CCNGG	8 cut(s)	52, 78, 1068, 1069, 1087, 1185, 1305, 1526
Mva1269I	GAATGC	2 cut(s)	401, 767
MvaI	CCWGG	2 cut(s)	1087, 1305
MvnI	CGCG	2 cut(s)	1379, 1759
MwoI	GCNNNNNNNGC	3 cut(s)	262, 508, 707
NciI	CCSGG	6 cut(s)	52, 78, 1068, 1069, 1185, 1526
NcoI	CCATGG	1 cut(s)	749
NdeI	CATATG	3 cut(s)	111, 130, 617
NdeII	GATC	7 cut(s)	183, 784, 865, 1165, 1742, 1750, 1824
NlaIV	GGNNCC	2 cut(s)	724, 1424
NmuCI	GTSAC	3 cut(s)	247, 541, 1927
NsiI	ATGCAT	1 cut(s)	574
NspI	RCATGY	4 cut(s)	418, 576, 679, 1396
NspV	TTCGAA	1 cut(s)	1443
PaeI	GCATGC	1 cut(s)	679
PaeR7I	CTCGAG	1 cut(s)	1417
PagI	TCATGA	1 cut(s)	1177
PaqCI	CACCTGC	1 cut(s)	1180
PciI	ACATGT	1 cut(s)	414
PcsI	WCGNNNNNNNCGW	1 cut(s)	909
PctI	GAATGC	2 cut(s)	401, 767
PdmI	GAANNNNTTC	4 cut(s)	89, 399, 841, 1782
PfeI	GAWTC	3 cut(s)	366, 831, 932
PflMI	CCANNNNNTGG	1 cut(s)	1352
PkrI	GCNGC	2 cut(s)	426, 766
PleI	GAGTC	6 cut(s)	1123, 1280, 1370, 1453, 1511, 1710
PpsI	GAGTC	6 cut(s)	1123, 1280, 1370, 1453, 1511, 1710
PpuMI	RGGWCCY	1 cut(s)	1422
PscI	ACATGT	1 cut(s)	414
Psp124BI	GAGCTC	1 cut(s)	1732
Psp1406I	AACGTT	1 cut(s)	1272
Psp5II	RGGWCCY	1 cut(s)	1422
Psp6I	CCWGG	2 cut(s)	1085, 1303
PspEI	GGTNACC	1 cut(s)	1849
PspGI	CCWGG	2 cut(s)	1085, 1303
PspN4I	GGNNCC	2 cut(s)	724, 1424
PspPI	GGNCC	3 cut(s)	927, 1413, 1422
PspPPI	RGGWCCY	1 cut(s)	1422
PspXI	VCTCGAGB	1 cut(s)	1417
PsuI	RGATCY	1 cut(s)	183
PvuII	CAGCTG	1 cut(s)	1624
RsaI	GTAC	6 cut(s)	26, 313, 435, 724, 1020, 1189
RsaNI	GTAC	6 cut(s)	25, 312, 434, 723, 1019, 1188
RseI	CAYNNNNRTG	3 cut(s)	824, 1602, 1712
SacI	GAGCTC	1 cut(s)	1732
SaqAI	TTAA	2 cut(s)	1907, 1933
SatI	GCNGC	2 cut(s)	425, 765
Sau3AI	GATC	7 cut(s)	183, 784, 865, 1165, 1742, 1750, 1824
Sau96I	GGNCC	3 cut(s)	927, 1413, 1422
SchI	GAGTC	6 cut(s)	1124, 1280, 1371, 1453, 1512, 1711
ScrFI	CCNGG	8 cut(s)	52, 78, 1068, 1069, 1087, 1185, 1305, 1526
SduI	GDGCHC	3 cut(s)	1045, 1719, 1732
SfaNI	GCATC	5 cut(s)	559, 656, 945, 980, 1869
Sfr274I	CTCGAG	1 cut(s)	1417
SfuI	TTCGAA	1 cut(s)	1443
SinI	GGWCC	2 cut(s)	1413, 1422
SlaI	CTCGAG	1 cut(s)	1417
SmaI	CCCGGG	1 cut(s)	1069
SmiMI	CAYNNNNRTG	3 cut(s)	824, 1602, 1712
SmlI	CTYRAG	1 cut(s)	1417
SmoI	CTYRAG	1 cut(s)	1417
SpeI	ACTAGT	3 cut(s)	521, 1160, 1517
SphI	GCATGC	1 cut(s)	679
Sse9I	AATT	5 cut(s)	169, 774, 807, 1430, 1552
SsiI	CCGC	2 cut(s)	73, 969
SspI	AATATT	1 cut(s)	1408
SspMI	CTAG	5 cut(s)	522, 1077, 1161, 1518, 1914
SstI	GAGCTC	1 cut(s)	1732
StyD4I	CCNGG	8 cut(s)	50, 76, 1066, 1067, 1085, 1183, 1303, 1524
StyI	CCWWGG	4 cut(s)	299, 503, 749, 1007
TaaI	ACNGT	7 cut(s)	146, 362, 736, 746, 1209, 1248, 1373
TaiI	ACGT	6 cut(s)	69, 539, 1048, 1126, 1275, 1869
TaqI	TCGA	8 cut(s)	493, 787, 903, 1418, 1443, 1637, 1745, 1806
TaqII	GACCGA	1 cut(s)	266
TasI	AATT	5 cut(s)	169, 774, 807, 1430, 1552
TatI	WGTACW	3 cut(s)	24, 311, 433
TfiI	GAWTC	3 cut(s)	366, 831, 932
Tru1I	TTAA	2 cut(s)	1907, 1933
Tru9I	TTAA	2 cut(s)	1907, 1933
TscAI	CASTG	2 cut(s)	1378, 1843
TseFI	GTSAC	3 cut(s)	247, 541, 1927
TseI	GCWGC	2 cut(s)	424, 764
Tsp45I	GTSAC	3 cut(s)	247, 541, 1927
TspDTI	ATGAA	7 cut(s)	483, 760, 809, 1194, 1201, 1295, 1791
TspMI	CCCGGG	1 cut(s)	1067
TspRI	CASTG	2 cut(s)	1378, 1843
Van91I	CCANNNNNTGG	1 cut(s)	1352
VpaK11BI	GGWCC	2 cut(s)	1413, 1422
XceI	RCATGY	4 cut(s)	418, 576, 679, 1396
XcmI	CCANNNNNNNNNTGG	2 cut(s)	297, 1230
XhoI	CTCGAG	1 cut(s)	1417
XmaI	CCCGGG	1 cut(s)	1067
XmnI	GAANNNNTTC	4 cut(s)	89, 399, 841, 1782
XspI	CTAG	5 cut(s)	522, 1077, 1161, 1518, 1914
ZraI	GACGTC	1 cut(s)	1867
Zsp2I	ATGCAT	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.