Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003688

Physical Location & Seq

Genomic Coordinates Reverse (-)

28806026 .. 28810370

Gene Structure 4345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g26170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1728 bp

ATGGTGCCGAGAACCGCTGGTGTGGAAGGACCACCGCCGACCGCCACCGTGAATGCTGGAGAAAGCAGCGGATGTTCCGACGCTGCCGCCTTGCCGGCAGCTAACAATAACCAAGGTGAGAAAGATGATTTGTACACACACTTATGGTATGCCTGCGCCGGGGCGAATGTTTACGTTCCCCGCCCCGGCGAGAAGGTTTTCTACTTTCTTCAAGGTCATATGGAACAGGTTGAGGCATATGCAAATCAAGACGGTGAAATGGAAATGCCAAGATACAATTTGCCTCCCAAGATCCTCTGCAATGTTGTATGTGTTCAACTCAAGTTATTCTTACTTCACAGAGGAGAAAATGGAGAACTGCGTGTTGGCATACACCGTGCGACCAAAACACAAGATACTGCATCAGCTTCTCTCATTTCTGGCCACAGCATGCAGCATGGCATACTTGCGAGCGCTCTCCATGCCATTTCTACTGGTACCATGTTTACTGTTTACTACCGTCCATGGACAAGTCCTGCTGCATTCATAATTCCTTATGATCGATACATGAAATCAGCCGAAATTGACTATTCCATTGGAATGAGATTCAGAATGTATTCCGAAGGTGAAGAATGTGCAGATCAGAAGAAGAGGTTGGAAGGAACTATTATAGATATCGAGGACTACGATTATTTGAGGTGGCCCAATTCAGAATGGAGGCGTCTGAAGGTGCGATTGGATACCGCATCAGATACATGCTTCCATTCTGAAAGGCTCTCTCCTTGGAATATCGTACCTCTCAAACCTAACAAGAGGGCACGTTTACCTGGTTTGCCATCACCCGGGATTTCTAGCTTGGCCAGGAATGGTCAGGTTCTTCAACTTATCTCTCTTTTTCTCTTATTAGGCTCGTTGCTGATTTCAGTTGAGTCCACACGTCCAAGAAAAAAAAAGGTCTTTCAAGGTCAAGAAACTAGTGATCCACCTGCTCATGGACCGCGTACACCAAAACAGCTATTACAGTTCATTCCACCCCCAAATCCTGACTGGGACTACACACAGTTGGGATTGGAAAACAATCTCAACGTTCCAATGAACGACTCACTTTATCAATGTCCTGGCAGTCCAAAAGCTCCAAGCCTTACTAACCAATGGCCACCAAAGTTTGGTTTTGGAGTCTTTGACAGCGGCGCGTGTAAAAGAAGCATGTCAGTTCCAAATATTTGGTCCTCGGGGTCCCAGAAATTGAGAACCTTCGAACTGAGGAACGAGACTCAATCGCCACTTGTCCAACCCAAGACCACAATGCTTTTTGGAGTCAATATAGTTACTAGTTACCCGGAGCTTCCTTCACCCCAAGTTGCCAATTCTATTGAACTTTATAGTCCTTGTTCTACTCCTCCAACGTATCATTCAAGTGTTTCTGAAACAATCCAGCTGTCAGAGACATCGAAGAGTATCTCTGGTGTTCGGTCAGAGAAACAATGCAGGAAATGTTGCTCTGTCAGTAACAGGAGTTGCATAAAGGTGCTCAAACACGGAGCTCCTGTTGGAAGATCGATTGATCTCACGCACTTTGATGGTTACAACGAACTCATTTGTGAGCTTGACCAGATGTTTGATTTCAAAGGAAGCCTGATCGGTGGAAGCAGTGGATGGCAGGTAACCTACATCGATGACGTTGGATACAGGATGCTGGTAGGAGATTACCCGTGGCAGTTAAGAACTAGAACTTATGCTGTGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

576

Amino Acids

64.05

Weight (kDa)

8.1

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRWD_AD	PF25313	157 - 261	9.3e-06	BRWD/PHIP ancillary domain-like domain
ARF_AD	PF06507	175 - 260	1.5e-24	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24730 FvH4_2g24730 FvH4_2g24730 FvH4_5g06540
malus_domestica	MD00G1056300.v1.1 MD05G1338500.v1.1 MD11G1297900.v1.1
prunus_persica	Prupe.8G252300_v2.0.a1
pyrus_communis	pycom02g21520 pycom03g21940 pycom03g21950 pycom05g12140 pycom11g26170 pycom16g06400 pycom16g24090
rosa_chinensis	RchiOBHm_Chr6g0292551
rosa_laevigata	RLG00000012010
rosa_multiflora	Rmu_co8118566.1_g000001 Rmu_sc0000515.1_g000001 Rmu_sc0003486.1_g000005 Rmu_sc0004825.1_g000018
rosa_roxburghii	Rroxscaffold_4G00318020 Rroxscaffold_7G00174940
rosa_rugosa	Rorug06G0227900
rosa_samantha	Rh5AG357200 Rh5DG382900 Rh6AG341000 Rh6AG341100 Rh6BG089400 Rh6BG348500 Rh6CG355300 Rh6CG355400 Rh6DG341100 Rh6DG341200
rosa_wichuraiana	Rw6G029710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	973
Acc36I	ACCTGC	2 cut(s)	973, 1630
Acc65I	GGTACC	1 cut(s)	476
AccB1I	GGYRCC	2 cut(s)	4, 476
AccB7I	CCANNNNNTGG	1 cut(s)	1145
AccII	CGCG	2 cut(s)	979, 1172
AciI	CCGC	9 cut(s)	15, 35, 42, 69, 87, 181, 723, 977, 1167
AclI	AACGTT	1 cut(s)	1065
AclWI	GGATC	2 cut(s)	286, 953
AcoI	YGGCCR	3 cut(s)	421, 837, 1133
AcuI	CTGAAG	1 cut(s)	725
AcyI	GRCGYC	1 cut(s)	700
AfaI	GTAC	4 cut(s)	134, 478, 774, 982
AfeI	AGCGCT	1 cut(s)	454
AfiI	CCNNNNNNNGG	5 cut(s)	159, 185, 821, 971, 1145
AflIII	ACRYGT	1 cut(s)	914
AgsI	TTSAA	7 cut(s)	212, 317, 860, 941, 1355, 1395, 1606
AhlI	ACTAGT	2 cut(s)	953, 1310
AjiI	CACGTC	1 cut(s)	917
AjnI	CCWGG	3 cut(s)	805, 839, 1096
AjuI	GAANNNNNNNTTGG	8 cut(s)	348, 380, 617, 649, 698, 730, 1375, 1407
AluBI	AGCT	9 cut(s)	101, 407, 834, 994, 1112, 1324, 1417, 1523, 1585
AluI	AGCT	9 cut(s)	101, 407, 834, 994, 1112, 1324, 1417, 1523, 1585
Alw21I	GWGCWC	2 cut(s)	1512, 1525
Alw26I	GTCTC	2 cut(s)	1244, 1418
AlwI	GGATC	2 cut(s)	286, 953
Ama87I	CYCGRG	2 cut(s)	821, 1210
Aor51HI	AGCGCT	1 cut(s)	454
AoxI	GGCC	4 cut(s)	421, 680, 837, 1133
ApeKI	GCWGC	5 cut(s)	66, 83, 98, 433, 518
ArsI	GACNNNNNNTTYG	4 cut(s)	1190, 1222, 1580, 1612
Asp700I	GAANNNNTTC	2 cut(s)	197, 595
Asp718I	GGTACC	1 cut(s)	476
AspLEI	GCGC	3 cut(s)	158, 455, 1172
AspS9I	GGNCC	5 cut(s)	29, 681, 974, 1206, 1215
AsuC2I	CCSGG	5 cut(s)	160, 186, 822, 823, 1319
AsuHPI	GGTGA	5 cut(s)	128, 266, 617, 810, 1323
AsuII	TTCGAA	1 cut(s)	1236
AvaI	CYCGRG	2 cut(s)	821, 1210
AvaII	GGWCC	4 cut(s)	29, 974, 1206, 1215
BaeGI	GKGCMC	1 cut(s)	799
BalI	TGGCCA	3 cut(s)	423, 839, 1135
BanI	GGYRCC	2 cut(s)	4, 476
BanII	GRGCYC	1 cut(s)	1525
BarI	GAAGNNNNNNTAC	2 cut(s)	185, 217
Bbv12I	GWGCWC	2 cut(s)	1512, 1525
BbvI	GCAGC	5 cut(s)	70, 78, 110, 445, 505
BccI	CCATC	3 cut(s)	823, 1553, 1629
BciT130I	CCWGG	3 cut(s)	807, 841, 1098
BciVI	GTATCC	2 cut(s)	712, 1658
BcnI	CCSGG	5 cut(s)	160, 186, 822, 823, 1319
BcoDI	GTCTC	2 cut(s)	1244, 1418
BcuI	ACTAGT	2 cut(s)	953, 1310
BfaI	CTAG	4 cut(s)	831, 954, 1311, 1707
BfoI	RGCGCY	1 cut(s)	456
BfuAI	ACCTGC	2 cut(s)	973, 1630
BfuI	GTATCC	2 cut(s)	712, 1658
BglI	GCCNNNNNGGC	1 cut(s)	95
BisI	GCNGC	7 cut(s)	67, 84, 87, 99, 434, 519, 1168
BlsI	GCNGC	7 cut(s)	68, 85, 88, 100, 435, 520, 1169
Bme1390I	CCNGG	8 cut(s)	160, 186, 807, 822, 823, 841, 1098, 1319
Bme18I	GGWCC	4 cut(s)	29, 974, 1206, 1215
BmeT110I	CYCGRG	2 cut(s)	821, 1210
BmgBI	CACGTC	1 cut(s)	917
BmgT120I	GGNCC	5 cut(s)	29, 681, 974, 1206, 1215
BmiI	GGNNCC	4 cut(s)	6, 478, 1216, 1217
BmrFI	CCNGG	8 cut(s)	160, 186, 807, 822, 823, 841, 1098, 1319
BmrI	ACTGGG	1 cut(s)	1036
BmsI	GCATC	3 cut(s)	410, 734, 1662
BmuI	ACTGGG	1 cut(s)	1036
BpmI	CTGGAG	1 cut(s)	78
Bpu14I	TTCGAA	1 cut(s)	1236
BpuEI	CTTGAG	1 cut(s)	305
BpuMI	CCSGG	5 cut(s)	160, 186, 822, 823, 1319
Bsa29I	ATCGAT	3 cut(s)	541, 1538, 1653
BsaHI	GRCGYC	1 cut(s)	700
BsaJI	CCNNGG	8 cut(s)	112, 159, 184, 503, 761, 821, 1209, 1691
BsaXI	ACNNNNNCTCC	2 cut(s)	1512, 1542
Bsc4I	CCNNNNNNNGG	5 cut(s)	159, 185, 821, 971, 1145
Bse118I	RCCGGY	1 cut(s)	94
Bse1I	ACTGG	2 cut(s)	478, 1031
Bse3DI	GCAATG	1 cut(s)	307
BseBI	CCWGG	3 cut(s)	807, 841, 1098
BseCI	ATCGAT	3 cut(s)	541, 1538, 1653
BseDI	CCNNGG	8 cut(s)	112, 159, 184, 503, 761, 821, 1209, 1691
BseGI	GGATG	3 cut(s)	77, 1640, 1677
BseLI	CCNNNNNNNGG	5 cut(s)	159, 185, 821, 971, 1145
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	1 cut(s)	1232
BseNI	ACTGG	2 cut(s)	478, 1031
BseRI	GAGGAG	2 cut(s)	357, 1368
BseSI	GKGCMC	1 cut(s)	799
BseXI	GCAGC	5 cut(s)	70, 78, 110, 445, 505
BsgI	GTGCAG	1 cut(s)	636
Bsh1236I	CGCG	2 cut(s)	979, 1172
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	4 cut(s)	423, 682, 839, 1135
BshNI	GGYRCC	2 cut(s)	4, 476
BshVI	ATCGAT	3 cut(s)	541, 1538, 1653
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	2 cut(s)	1512, 1525
BsiHKCI	CYCGRG	2 cut(s)	821, 1210
BsiSI	CCGG	5 cut(s)	95, 159, 186, 822, 1319
BslFI	GGGAC	2 cut(s)	1043, 1201
BslI	CCNNNNNNNGG	5 cut(s)	159, 185, 821, 971, 1145
BsmAI	GTCTC	2 cut(s)	1244, 1418
BsmFI	GGGAC	2 cut(s)	1043, 1201
BsmI	GAATGC	2 cut(s)	58, 521
BsnI	GGCC	4 cut(s)	423, 682, 839, 1135
BsoBI	CYCGRG	2 cut(s)	821, 1210
Bsp119I	TTCGAA	1 cut(s)	1236
Bsp1286I	GDGCHC	3 cut(s)	799, 1512, 1525
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	7 cut(s)	291, 538, 619, 958, 1535, 1543, 1617
Bsp19I	CCATGG	1 cut(s)	503
BspACI	CCGC	9 cut(s)	15, 35, 42, 69, 87, 181, 723, 977, 1167
BspANI	GGCC	4 cut(s)	423, 682, 839, 1135
BspCNI	CTCAG	1 cut(s)	1233
BspDI	ATCGAT	3 cut(s)	541, 1538, 1653
BspFNI	CGCG	2 cut(s)	979, 1172
BspLI	GGNNCC	4 cut(s)	6, 478, 1216, 1217
BspMI	ACCTGC	2 cut(s)	973, 1630
BspPI	GGATC	2 cut(s)	286, 953
BspT104I	TTCGAA	1 cut(s)	1236
BspT107I	GGYRCC	2 cut(s)	4, 476
BsrDI	GCAATG	1 cut(s)	307
BsrFI	RCCGGY	1 cut(s)	94
BsrGI	TGTACA	1 cut(s)	132
BsrI	ACTGG	2 cut(s)	478, 1031
BssAI	RCCGGY	1 cut(s)	94
BssECI	CCNNGG	8 cut(s)	112, 159, 184, 503, 761, 821, 1209, 1691
BssMI	GATC	7 cut(s)	291, 538, 619, 958, 1535, 1543, 1617
BssNI	GRCGYC	1 cut(s)	700
BssT1I	CCWWGG	3 cut(s)	112, 503, 761
Bst2UI	CCWGG	3 cut(s)	807, 841, 1098
Bst4CI	ACNGT	7 cut(s)	49, 254, 377, 490, 500, 1002, 1041
Bst6I	CTCTTC	2 cut(s)	623, 1427
BstACI	GRCGYC	1 cut(s)	700
BstAUI	TGTACA	1 cut(s)	132
BstBI	TTCGAA	1 cut(s)	1236
BstC8I	GCNNGC	4 cut(s)	96, 154, 431, 451
BstDEI	CTNAG	1 cut(s)	1241
BstDSI	CCRYGG	2 cut(s)	503, 1691
BstEII	GGTNACC	1 cut(s)	1642
BstF5I	GGATG	3 cut(s)	77, 1640, 1677
BstFNI	CGCG	2 cut(s)	979, 1172
BstH2I	RGCGCY	1 cut(s)	456
BstHHI	GCGC	3 cut(s)	158, 455, 1172
BstKTI	GATC	7 cut(s)	294, 541, 622, 961, 1538, 1546, 1620
BstMAI	GTCTC	2 cut(s)	1244, 1418
BstMBI	GATC	7 cut(s)	291, 538, 619, 958, 1535, 1543, 1617
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 461
BstNI	CCWGG	3 cut(s)	807, 841, 1098
BstNSI	RCATGY	3 cut(s)	433, 738, 1189
BstPI	GGTNACC	1 cut(s)	1642
BstSCI	CCNGG	8 cut(s)	158, 184, 805, 820, 821, 839, 1096, 1317
BstSLI	GKGCMC	1 cut(s)	799
BstUI	CGCG	2 cut(s)	979, 1172
BstV1I	GCAGC	5 cut(s)	70, 78, 110, 445, 505
BstX2I	RGATCY	1 cut(s)	291
BstXI	CCANNNNNNTGG	1 cut(s)	1203
BstYI	RGATCY	1 cut(s)	291
Bsu15I	ATCGAT	3 cut(s)	541, 1538, 1653
BsuI	GTATCC	2 cut(s)	712, 1658
BsuRI	GGCC	4 cut(s)	423, 682, 839, 1135
BsuTUI	ATCGAT	3 cut(s)	541, 1538, 1653
BtgI	CCRYGG	2 cut(s)	503, 1691
BtrI	CACGTC	1 cut(s)	917
BtsCI	GGATG	3 cut(s)	77, 1640, 1677
BtsI	GCAGTG	1 cut(s)	1636
BtsIMutI	CAGTG	1 cut(s)	1636
BveI	ACCTGC	2 cut(s)	973, 1630
Cac8I	GCNNGC	4 cut(s)	96, 154, 431, 451
CfoI	GCGC	3 cut(s)	158, 455, 1172
Cfr10I	RCCGGY	1 cut(s)	94
Cfr13I	GGNCC	5 cut(s)	29, 681, 974, 1206, 1215
Cfr9I	CCCGGG	1 cut(s)	821
ClaI	ATCGAT	3 cut(s)	541, 1538, 1653
CseI	GACGC	2 cut(s)	89, 689
CsiI	ACCWGGT	1 cut(s)	805
Csp6I	GTAC	4 cut(s)	133, 477, 773, 981
CviAII	CATG	9 cut(s)	430, 437, 461, 481, 504, 547, 735, 971, 1186
CviQI	GTAC	4 cut(s)	133, 477, 773, 981
DdeI	CTNAG	1 cut(s)	1241
DpnI	GATC	7 cut(s)	293, 540, 621, 960, 1537, 1545, 1619
DpnII	GATC	7 cut(s)	291, 538, 619, 958, 1535, 1543, 1617
EaeI	YGGCCR	3 cut(s)	421, 837, 1133
Eam1104I	CTCTTC	2 cut(s)	623, 1427
EarI	CTCTTC	2 cut(s)	623, 1427
Ecl136II	GAGCTC	1 cut(s)	1523
Eco130I	CCWWGG	3 cut(s)	112, 503, 761
Eco24I	GRGCYC	1 cut(s)	1525
Eco32I	GATATC	1 cut(s)	655
Eco47I	GGWCC	4 cut(s)	29, 974, 1206, 1215
Eco47III	AGCGCT	1 cut(s)	454
Eco53kI	GAGCTC	1 cut(s)	1523
Eco57I	CTGAAG	1 cut(s)	725
Eco88I	CYCGRG	2 cut(s)	821, 1210
Eco91I	GGTNACC	1 cut(s)	1642
EcoICRI	GAGCTC	1 cut(s)	1523
EcoO109I	RGGNCCY	1 cut(s)	1215
EcoO65I	GGTNACC	1 cut(s)	1642
EcoRII	CCWGG	3 cut(s)	805, 839, 1096
EcoRV	GATATC	1 cut(s)	655
EcoT14I	CCWWGG	3 cut(s)	112, 503, 761
EcoT38I	GRGCYC	1 cut(s)	1525
ErhI	CCWWGG	3 cut(s)	112, 503, 761
FaeI	CATG	9 cut(s)	433, 440, 464, 484, 507, 550, 738, 974, 1189
FalI	AAGNNNNNCTT	2 cut(s)	314, 346
FaqI	GGGAC	2 cut(s)	1043, 1201
FatI	CATG	9 cut(s)	429, 436, 460, 480, 503, 546, 734, 970, 1185
FauI	CCCGC	1 cut(s)	188
FauNDI	CATATG	2 cut(s)	219, 238
Fnu4HI	GCNGC	7 cut(s)	67, 84, 87, 99, 434, 519, 1168
FokI	GGATG	3 cut(s)	84, 1647, 1684
FriOI	GRGCYC	1 cut(s)	1525
Fsp4HI	GCNGC	7 cut(s)	67, 84, 87, 99, 434, 519, 1168
FspBI	CTAG	4 cut(s)	831, 954, 1311, 1707
GlaI	GCGC	3 cut(s)	157, 454, 1171
GluI	GCNGC	7 cut(s)	67, 84, 87, 99, 434, 519, 1168
GsuI	CTGGAG	1 cut(s)	78
HaeII	RGCGCY	1 cut(s)	456
HaeIII	GGCC	4 cut(s)	423, 682, 839, 1135
HapII	CCGG	5 cut(s)	95, 159, 186, 822, 1319
HgaI	GACGC	2 cut(s)	89, 689
HhaI	GCGC	3 cut(s)	158, 455, 1172
Hin1I	GRCGYC	1 cut(s)	700
Hin1II	CATG	9 cut(s)	433, 440, 464, 484, 507, 550, 738, 974, 1189
Hin6I	GCGC	3 cut(s)	156, 453, 1170
HinP1I	GCGC	3 cut(s)	156, 453, 1170
HinfI	GANTC	6 cut(s)	585, 908, 1079, 1155, 1252, 1296
HpaII	CCGG	5 cut(s)	95, 159, 186, 822, 1319
HphI	GGTGA	5 cut(s)	128, 266, 617, 810, 1323
Hpy166II	GTNNAC	7 cut(s)	135, 172, 486, 493, 803, 912, 983
Hpy188III	TCNNGA	3 cut(s)	248, 947, 1022
Hpy8I	GTNNAC	7 cut(s)	135, 172, 486, 493, 803, 912, 983
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	7 cut(s)	20, 187, 596, 632, 700, 1243, 1338
HpyCH4III	ACNGT	7 cut(s)	49, 254, 377, 490, 500, 1002, 1041
HpyCH4IV	ACGT	6 cut(s)	174, 799, 916, 1065, 1385, 1659
HpyCH4V	TGCA	8 cut(s)	242, 300, 401, 433, 521, 617, 1467, 1500
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 461
HpyF3I	CTNAG	1 cut(s)	1241
HpySE526I	ACGT	6 cut(s)	174, 799, 916, 1065, 1385, 1659
Hsp92I	GRCGYC	1 cut(s)	700
Hsp92II	CATG	9 cut(s)	433, 440, 464, 484, 507, 550, 738, 974, 1189
HspAI	GCGC	3 cut(s)	156, 453, 1170
KflI	GGGWCCC	1 cut(s)	1215
KpnI	GGTACC	1 cut(s)	480
KroI	GCCGGC	1 cut(s)	94
KroNI	GCCGGC	1 cut(s)	96
Kzo9I	GATC	7 cut(s)	291, 538, 619, 958, 1535, 1543, 1617
LmnI	GCTCC	4 cut(s)	1117, 1321, 1520, 1528
Lsp1109I	GCAGC	5 cut(s)	70, 78, 110, 445, 505
LweI	GCATC	3 cut(s)	410, 734, 1662
MabI	ACCWGGT	1 cut(s)	805
MaeI	CTAG	4 cut(s)	831, 954, 1311, 1707
MaeII	ACGT	6 cut(s)	174, 799, 916, 1065, 1385, 1659
MaeIII	GTNAC	6 cut(s)	1306, 1313, 1487, 1562, 1642, 1720
MalI	GATC	7 cut(s)	293, 540, 621, 960, 1537, 1545, 1619
MboI	GATC	7 cut(s)	291, 538, 619, 958, 1535, 1543, 1617
MboII	GAAGA	7 cut(s)	200, 620, 637, 640, 848, 1444, 1545
MflI	RGATCY	1 cut(s)	291
MhlI	GDGCHC	3 cut(s)	799, 1512, 1525
MlsI	TGGCCA	3 cut(s)	423, 839, 1135
MluCI	AATT	6 cut(s)	277, 528, 561, 685, 1223, 1345
MluNI	TGGCCA	3 cut(s)	423, 839, 1135
MlyI	GAGTC	5 cut(s)	917, 1073, 1164, 1246, 1305
MmeI	TCCRAC	6 cut(s)	102, 615, 1294, 1406, 1510, 1642
Mox20I	TGGCCA	3 cut(s)	423, 839, 1135
MroNI	GCCGGC	1 cut(s)	94
MroXI	GAANNNNTTC	2 cut(s)	197, 595
MscI	TGGCCA	3 cut(s)	423, 839, 1135
MseI	TTAA	2 cut(s)	1700, 1726
MslI	CAYNNNNRTG	5 cut(s)	142, 578, 1395, 1505, 1557
Msp20I	TGGCCA	3 cut(s)	423, 839, 1135
MspA1I	CMGCKG	4 cut(s)	17, 69, 1167, 1417
MspI	CCGG	5 cut(s)	95, 159, 186, 822, 1319
MspR9I	CCNGG	8 cut(s)	160, 186, 807, 822, 823, 841, 1098, 1319
Mva1269I	GAATGC	2 cut(s)	58, 521
MvaI	CCWGG	3 cut(s)	807, 841, 1098
MvnI	CGCG	2 cut(s)	979, 1172
MwoI	GCNNNNNNNGC	2 cut(s)	95, 461
NaeI	GCCGGC	1 cut(s)	96
NciI	CCSGG	5 cut(s)	160, 186, 822, 823, 1319
NcoI	CCATGG	1 cut(s)	503
NdeI	CATATG	2 cut(s)	219, 238
NdeII	GATC	7 cut(s)	291, 538, 619, 958, 1535, 1543, 1617
NgoMIV	GCCGGC	1 cut(s)	94
NlaIII	CATG	9 cut(s)	433, 440, 464, 484, 507, 550, 738, 974, 1189
NlaIV	GGNNCC	4 cut(s)	6, 478, 1216, 1217
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	1 cut(s)	1720
NspI	RCATGY	3 cut(s)	433, 738, 1189
NspV	TTCGAA	1 cut(s)	1236
PaeI	GCATGC	1 cut(s)	433
PaqCI	CACCTGC	1 cut(s)	973
PcsI	WCGNNNNNNNCGW	1 cut(s)	663
PctI	GAATGC	2 cut(s)	58, 521
PdiI	GCCGGC	1 cut(s)	96
PdmI	GAANNNNTTC	2 cut(s)	197, 595
PfeI	GAWTC	1 cut(s)	585
PflMI	CCANNNNNTGG	1 cut(s)	1145
PkrI	GCNGC	7 cut(s)	68, 85, 88, 100, 435, 520, 1169
PleI	GAGTC	5 cut(s)	916, 1073, 1163, 1246, 1304
PpsI	GAGTC	5 cut(s)	916, 1073, 1163, 1246, 1304
PpuMI	RGGWCCY	1 cut(s)	1215
Psp124BI	GAGCTC	1 cut(s)	1525
Psp1406I	AACGTT	1 cut(s)	1065
Psp5II	RGGWCCY	1 cut(s)	1215
Psp6I	CCWGG	3 cut(s)	805, 839, 1096
PspEI	GGTNACC	1 cut(s)	1642
PspGI	CCWGG	3 cut(s)	805, 839, 1096
PspN4I	GGNNCC	4 cut(s)	6, 478, 1216, 1217
PspPI	GGNCC	5 cut(s)	29, 681, 974, 1206, 1215
PspPPI	RGGWCCY	1 cut(s)	1215
PsuI	RGATCY	1 cut(s)	291
PvuII	CAGCTG	1 cut(s)	1417
RsaI	GTAC	4 cut(s)	134, 478, 774, 982
RsaNI	GTAC	4 cut(s)	133, 477, 773, 981
RseI	CAYNNNNRTG	5 cut(s)	142, 578, 1395, 1505, 1557
SacI	GAGCTC	1 cut(s)	1525
SaqAI	TTAA	2 cut(s)	1700, 1726
SatI	GCNGC	7 cut(s)	67, 84, 87, 99, 434, 519, 1168
Sau3AI	GATC	7 cut(s)	291, 538, 619, 958, 1535, 1543, 1617
Sau96I	GGNCC	5 cut(s)	29, 681, 974, 1206, 1215
SchI	GAGTC	5 cut(s)	917, 1073, 1164, 1246, 1305
ScrFI	CCNGG	8 cut(s)	160, 186, 807, 822, 823, 841, 1098, 1319
SduI	GDGCHC	3 cut(s)	799, 1512, 1525
SexAI	ACCWGGT	1 cut(s)	805
SfaNI	GCATC	3 cut(s)	410, 734, 1662
SfuI	TTCGAA	1 cut(s)	1236
SinI	GGWCC	4 cut(s)	29, 974, 1206, 1215
SmaI	CCCGGG	1 cut(s)	823
SmiMI	CAYNNNNRTG	5 cut(s)	142, 578, 1395, 1505, 1557
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
SpeI	ACTAGT	2 cut(s)	953, 1310
SphI	GCATGC	1 cut(s)	433
Sse9I	AATT	6 cut(s)	277, 528, 561, 685, 1223, 1345
SsiI	CCGC	9 cut(s)	15, 35, 42, 69, 87, 181, 723, 977, 1167
SspI	AATATT	1 cut(s)	1201
SspMI	CTAG	4 cut(s)	831, 954, 1311, 1707
SstI	GAGCTC	1 cut(s)	1525
StyD4I	CCNGG	8 cut(s)	158, 184, 805, 820, 821, 839, 1096, 1317
StyI	CCWWGG	3 cut(s)	112, 503, 761
TaaI	ACNGT	7 cut(s)	49, 254, 377, 490, 500, 1002, 1041
TaiI	ACGT	6 cut(s)	177, 802, 919, 1068, 1388, 1662
TaqI	TCGA	6 cut(s)	541, 657, 1236, 1430, 1538, 1653
TaqII	GACCGA	1 cut(s)	1440
TasI	AATT	6 cut(s)	277, 528, 561, 685, 1223, 1345
TatI	WGTACW	1 cut(s)	132
TauI	GCSGC	2 cut(s)	89, 1170
TfiI	GAWTC	1 cut(s)	585
Tru1I	TTAA	2 cut(s)	1700, 1726
Tru9I	TTAA	2 cut(s)	1700, 1726
TscAI	CASTG	1 cut(s)	1636
TseFI	GTSAC	1 cut(s)	1720
TseI	GCWGC	5 cut(s)	66, 83, 98, 433, 518
Tsp45I	GTSAC	1 cut(s)	1720
TspDTI	ATGAA	4 cut(s)	514, 563, 994, 1088
TspGWI	ACGGA	1 cut(s)	1533
TspMI	CCCGGG	1 cut(s)	821
TspRI	CASTG	1 cut(s)	1636
Van91I	CCANNNNNTGG	1 cut(s)	1145
VpaK11BI	GGWCC	4 cut(s)	29, 974, 1206, 1215
XceI	RCATGY	3 cut(s)	433, 738, 1189
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1023
XmaI	CCCGGG	1 cut(s)	821
XmnI	GAANNNNTTC	2 cut(s)	197, 595
XspI	CTAG	4 cut(s)	831, 954, 1311, 1707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.